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✨ add WGS background data for Goat #86

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bunop opened this issue Apr 3, 2023 · 1 comment
Open
4 tasks

✨ add WGS background data for Goat #86

bunop opened this issue Apr 3, 2023 · 1 comment
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enhancement New feature or request

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@bunop
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bunop commented Apr 3, 2023

Is your feature request related to a problem? Please describe.
Add WGS background data for goat animals coming from Berihulay et al. 2019

Describe the solution you'd like
Import WGS background data like we did for iSheep data

Describe alternatives you've considered
Alternative could be different datasets or ignoring WGS data for Goats

Additional context

  • Check for ARS1 assembly (search SNPs relying on information in database)
  • Extract SNPs relying on probe position
  • Create metadata accordingly to publication and Supplementary Information
  • Convert into illumina top and import into database
@bunop bunop added the enhancement New feature or request label Apr 3, 2023
@bunop bunop added this to the SMARTER database v1.0.0 milestone Apr 3, 2023
@bunop
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bunop commented Apr 3, 2023

This dataset is not in ARS1: the last SNP in chromosome 17 is in position 71877642, while the same chromosome is 71137785 basepairs length (GCA_001704415.2)

@bunop bunop added this to SMARTER Aug 3, 2023
@bunop bunop moved this to To do in SMARTER Aug 3, 2023
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Labels
enhancement New feature or request
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Status: To do
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