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TODO

  • django-tables and django-filters integration
  • same as relationship support
  • Validate data using OLSv4 (see #119 for more information)
  • Submit data into BioSamples with current BioSamples application (see #120 for more information)

0.9.8 (2023-06-12)

Features

  • Solve issues with SearchOrphanTask
  • Update python magic file check when uploading data

0.9.7 (2021-07-01)

Features

  • remove flower from docker-compose.yml
  • Security updates
  • Update Travis CI configuration

0.9.6 (2021-02-12)

Features

  • fix readthedocs build
  • security updates
  • pinning package dependences
  • solved issue with celery autoscaling

0.9.5 (2020-06-08)

Features

  • keep at least two worker running

  • swap latitude and longitude row order in AnimalDetailView

  • add id columns to admin views

  • fix bug in reload submission (no more need to change version or type)

  • update template upload file (removed unused columns and encoded in UTF-8)

  • track and clean up orphaned BioSample IDs - add task to track IMAGE BioSamples id not tracked in InjectTool - Notify admins about orphan BioSamples - Patch BioSample by submitting the mandatory attributes with a releaseDate

    in the future

    • finalize and retrieve data from patched BioSamples using management scripts
    • deal with already removed samples

  • deal with issues when calling zooma

  • authenticate once when querying BioSamples

  • describe BioSamples submission statuses

  • update uploading data docs

0.9.4 (2020-03-03)

Features

  • refactor language.templates
  • returning bootstrap alert messages with zooma call
  • refactor uid.templates
  • simplified error message in token generation
  • model USI errors as ValidationResult objects
  • minor refactor
  • changed APP registration and about pages
  • add missing names to batch update
  • mark mandatory fields in forms with CSS
  • update uid.models.DictRole
  • schedule cleanup registration
  • refactor account activation message
  • upgrade Django to 2.2.10

0.9.3 (2020-01-31)

Features

  • No more 50x page when creating a submission with the same attributes of another one
  • Minor refactor
  • No edit submission with no data
  • forcing constraints for mandatory attributes
  • No more validation with READY state
  • rename empty template and download from CreateSubmissionView
  • changed URI for about pages
  • documentation review
  • truncate mail body sizes
  • track samples count and status in biosample.models.Submission
  • truncate error messages sent by emails
  • tune celery worker (autoscaling processes)
  • refactor admin Submission classes
  • suppress warnings for Processing submission status
  • pin pyUSIrest library to v0.3.1 and fix an issue in patching sample
  • fix a bug when recovering a submission
  • Improve wording in webpages
  • add missing staticfiles

0.9.2 (2020-01-17)

Features

  • upgrade Django to 2.2.9
  • pinning pyUSIrest dependency to v0.3.0
  • documenting the BioSamples submission process in sphinx
  • export BioSamples IDs as a CSV from Edit Submission view
  • force excel date cells into datetime.date objects
  • remove duplicated animal_age_at_collection column from excel template

0.9.1 (2019-12-19)

Features

  • fix issue in excel import when more that one animal is found in excel.helpers.ExcelTemplateReader.get_animal_from_sample
  • upgraded pyUSIrest module to support the BioSamples submission to production environment
  • fix wp5image.eu links in sphinx docs and templates
  • update documentation
  • minor fixes

0.9.0 (2019-11-15)

Features

  • remove /image/ location from django settings
  • remove /image/ location from NGINX
  • update docs
  • Upgrade Django to last LTS version (2.2)
  • Tests and code were fixed
  • Migrations were resetted to initial state
  • model the new species/translations in initializedb
  • a better error message when uploading missing relationship with excel.helpers
  • catch import from cryoweb errors
  • clean up biosample.models.Submission
  • moved PersonMixinTestCase into uid.tests.mixins
  • add UpdateOrganizationView
  • update dashboard and submission delete templates

0.8.0 (2019-11-07)

Features

  • add a missed migration
  • deal with improved token duration
  • read EBI endpoints from configuration files and determine if they are tests endpoint or not
  • remove test warning banner relying on templatetags
  • biosample.forms updated
  • map to default breed if possible
  • add IMAGE submission id attribute to identify the original submission into InjectTool
  • improved image_app.admin and biosample.admin
  • move image_app to uid application
  • refactor Animal and Sample models by removing Name model
  • link to ValidationResult through generic relation
  • fix name collision issue (Animal and Sample with same names)
  • New constrain to Animal and Sample model to determine uniqueness in user space
  • Ignore already loaded Animal and Sample relying on their names if loaded in a different submission
  • Sort by relationship when submitting to BioSamples through SQL
  • Submit a Sample only submission (if Animal are defined in another submission)
  • improved error reporting while importing from excel for time/units fields
  • updated docs