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Allow extra chromosomes in map files #24

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bunop opened this issue Mar 8, 2021 · 0 comments
Open

Allow extra chromosomes in map files #24

bunop opened this issue Mar 8, 2021 · 0 comments

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@bunop
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bunop commented Mar 8, 2021

Is your feature request related to a problem? Please describe.
detectRUNS should be able to deal with extra chromosomes (Like Scaffold_12345 or Contig_1234)

Describe the solution you'd like
Functions need to be implemented (and tested) to work with str chromosomes, which can be also a custom string.

Describe alternatives you've considered
A workaround could be to replace the chromosome names with numbers, and then re-apply the original names on the returned dataframe. However, functions like Froh_inbreeding could have issues when a lot of chromosomes (>100) are present in the same moment

Additional context
issue #23 is related to this problem

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