ci #67

	name: ci

	on:
	push:
	branches:
	- "main"
	pull_request:
	branches:
	- "main"
	schedule:
	# Nightly tests run on main by default:
	# Scheduled workflows run on the latest commit on the default or base branch.
	# (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule)
	- cron: '0 0 /5 *' # Run every 5 days
	workflow_dispatch:

	concurrency:
	group: "${{ github.workflow }}-${{ github.ref }}"
	cancel-in-progress: true

	defaults:
	run:
	shell: bash -l {0}

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v2

	- name: Install docker-compose
	run: \|
	sudo apt-get update
	sudo apt-get install -y docker-compose

	- name: Copy example env file
	run: \|
	cp devtools/deployment/.env.example .env

	- name: Make OpenEye directory
	run: \|
	mkdir -p ~/.OpenEye

	- name: Copy OpenEye license file
	env:
	OE_LICENSE: ${{ secrets.OE_LICENSE }}
	run: \|
	echo "$OE_LICENSE" > ~/.OpenEye/oe_license.txt

	- name: Build containers
	run: \|
	docker-compose -f docker-compose-dev.yml build --build-arg USER_ID=$(id -u) --build-arg GROUP_ID=$(id -g)
	docker container ls
	docker-compose -f docker-compose-dev.yml up -d

	- name: Chown volume
	run: \|
	ls -alsh
	ls -alsh argos
	sudo chown -R $(id -u):$(id -g) argos/pdb_data

	- name: Run tests
	run: \|
	docker-compose -f docker-compose-dev.yml exec -T web bash -c "cd argos && /opt/conda/bin/python manage.py test --no-input"

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