site.config.json

{
  "site_name": "BioImage.IO",
  "site_icon": "🦒",
  "author": "BioImage.IO Team",
  "keywords": "Bioimaging, AI, deep learning, image processing",
  "description": "Bioimage.io -- an AI model repository for deep learning.",
  "twitter_site": "@bioimageio",
  "twitter_creator": "@weioyang",
  "twitter_image": "https://bioimage.io/static/img/bioimage-banner.png",
  "og_url": "https://bioimage.io",
  "og_title": "BioImage.IO",
  "og_image": "https://bioimage.io/static/img/bioimage-banner.png",
  "og_description": "Advanced AI models in one-click",
  "background_image": "static/img/zoo-background.svg",
  "manifest_url": "https://bioimage-io.github.io/bioimage-io-models/manifest.bioimage.io.json",
  "explore_button_text": "🚀 Explore the Zoo",
  "subscribe_url": "https://docs.google.com/forms/d/e/1FAIpQLSfQhTjXOuTXZNtalprbsXMPd4ct2ydiMhlPc2lhcs6WY4yo0w/viewform?embedded=true",
  "contribute_url": "https://raw.githubusercontent.com/bioimage-io/bioimage.io/master/docs/contribute.md",
  "join_partners_url": "https://raw.githubusercontent.com/bioimage-io/bioimage.io/master/docs/join-partners.md",
  "footer": [
    { "label": "Github Model Repository",
      "tooltip": "Bioimage Model Repository",
      "logo": "/static/img/github.png", 
      "url": "https://github.com/bioimage-io/bioimage-io-models"
    }
  ],
  "model_repo": "bioimage-io/bioimage-io-models",
  "enable_comment": true,
  "splash_title": "Bioimage Model Zoo",
  "splash_subtitle": "Advanced AI models in one-click",
  "splash_feature_list": [
    "Integrate with Fiji, Ilastik, ImJoy",
    "Try model instantly with BioEngine",
    "Contribute your models via Github",
    "Link models to datasets and applications"
  ],
  "table_view": {
    "columns": ["name", "authors", "badges", "apps"]
  },
  "attachment_table": {
    "columns": [
      {
        "field": "name",
        "label": "Name",
        "width": 80,
        "sortable": true
      },
      {
        "field": "description",
        "label": "Description",
        "width": 100,
        "max_length": 100,
        "sortable": true
      },
      {
        "field": "timestamp",
        "label": "Timestamp",
        "class": "tag is-success",
        "sortable": true
      },
      {
        "field": "source",
        "label": "Source",
        "type": "url",
        "text": "open",
        "class": "button is-small"
      },
      {
        "field": "download_url",
        "label": "Download",
        "type": "url",
        "text": "Download",
        "class": "button is-small"
      }
    ],
    "detailed": true,
    "detailed_image": null,
    "detailed_body": "description"
  },
  "footnote": "BioImage.io -- a collaborative effort to bring AI models to the bioimaging community.",
  "partners": [],
  "resource_categories": [
    {
      "name": "Models",
      "type": "model",
      "description": "List AI models",
      "outline_color": "rgb(36 0 236)",
      "tag_categories": {
        "modality": ["widefield", "confocal", "SR", "EM", "TEM", "cryoEM"],
        "content": [
          "extracellular vesicles",
          "platynereis",
          "arabidopsis",
          "platynereis",
          "vasculature",
          "plant tissue",
          "cell membrane",
          "brain"
        ],
        "framework": ["Tensorflow", "PyTorch", "Tensorflow.js"],
        "software": ["Ilastik", "ImageJ", "Fiji", "ImJoy", "DeepImageJ", "n2v"],
        "network": [
          "UNet",
          "UNet2D",
          "UNet3D",
          "DenseNet",
          "ResNet",
          "Inception",
          "Shufflenet"
        ],
        "task": [
          "segmentation",
          "nucleus-segmentation",
          "classification",
          "denoising",
          "in-silico-labeling"
        ]
      }
    },
    {
      "name": "Applications",
      "type": "application",
      "outline_color": "rgb(83 230 7)",
      "description": "List software, web apps and utility tools"
    },
    {
      "name": "Notebooks",
      "type": "notebook",
      "outline_color": "rgb(224 188 9)",
      "description": "List Jupyter notebooks/Colab for models, workflows"
    },
    {
      "name": "Datasets",
      "type": "dataset",
      "outline_color": "rgb(236 0 185)",
      "description": "List datasets"
    }
  ]
}