diff --git a/src/ontology/Makefile b/src/ontology/Makefile
index 44f829a..228d147 100644
--- a/src/ontology/Makefile
+++ b/src/ontology/Makefile
@@ -43,15 +43,8 @@ TODAY ?= $(shell date +%Y-%m-%d)
OBODATE ?= $(shell date +'%d:%m:%Y %H:%M')
VERSION= $(TODAY)
ANNOTATE_ONTOLOGY_VERSION = annotate -V $(ONTBASE)/releases/$(VERSION)/$@ --annotation owl:versionInfo $(VERSION)
-OTHER_SRC = $(PATTERNDIR)/definitions.owl
+OTHER_SRC =
ONTOLOGYTERMS = $(TMPDIR)/ontologyterms.txt
-PATTERNDIR= ../patterns
-DOSDP_SCHEMA= http:// # change to PURL when ready.
-PATTERN_TESTER= simple_pattern_tester.py
-DOSDPT= dosdp-tools
-PATTERN_RELEASE_FILES= $(PATTERNDIR)/definitions.owl $(PATTERNDIR)/pattern.owl
-
-
FORMATS = $(sort owl owl)
FORMATS_INCL_TSV = $(sort $(FORMATS) tsv)
@@ -64,7 +57,7 @@ RELEASE_ARTEFACTS = $(sort $(ONT)-full $(ONT)-base $(ONT)-base $(ONT)-full)
.PHONY: .FORCE
.PHONY: all
-all: odkversion all_imports patterns all_main all_subsets sparql_test all_reports all_assets
+all: odkversion all_imports all_main all_subsets sparql_test all_reports all_assets
.PHONY: test
test: odkversion sparql_test all_reports $(REPORTDIR)/validate_profile_owl2dl_$(ONT).owl.txt
@@ -168,8 +161,6 @@ CLEANFILES=$(MAIN_FILES) $(SRCMERGED)
.PHONY: prepare_release
prepare_release: $(ASSETS) $(PATTERN_RELEASE_FILES)
rsync -R $(RELEASE_ASSETS) $(RELEASEDIR) &&\
- mkdir -p $(RELEASEDIR)/patterns &&\
- cp $(PATTERN_RELEASE_FILES) $(RELEASEDIR)/patterns &&\
rm -f $(CLEANFILES) &&\
echo "Release files are now in $(RELEASEDIR) - now you should commit, push and make a release on your git hosting site such as GitHub or GitLab"
@@ -202,10 +193,10 @@ $(PRESEED): $(SRCMERGED)
-ALLSEED = $(PRESEED) $(PATTERNDIR)/all_pattern_terms.txt \
+ALLSEED = $(PRESEED) \
-$(IMPORTSEED): prepare_patterns $(ALLSEED)
+$(IMPORTSEED): $(ALLSEED)
if [ $(IMP) = true ]; then cat $(ALLSEED) | sort | uniq > $@; fi
@@ -227,7 +218,7 @@ imports/merged_import.owl: mirror/merged.owl imports/merged_terms_combined.txt
imports/%_import.owl: mirror/%.owl imports/%_terms_combined.txt
if [ $(IMP) = true ]; then $(ROBOT) query -i $< --update ../sparql/preprocess-module.ru \
- extract -T imports/$*_terms_combined.txt --force true --copy-ontology-annotations true --individuals include --method BOT \
+ extract -T imports/$*_terms_combined.txt --force true --copy-ontology-annotations true --individuals exclude --method BOT \
query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \
annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi
@@ -236,7 +227,7 @@ imports/%_import.owl: mirror/%.owl imports/%_terms_combined.txt
## Module for ontology: chebi
imports/chebi_import.owl: mirror/chebi.owl imports/chebi_terms_combined.txt
- if [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then $(ROBOT) extract -i $< -T imports/chebi_terms_combined.txt --force true --individuals include --method BOT \
+ if [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then $(ROBOT) extract -i $< -T imports/chebi_terms_combined.txt --force true --individuals exclude --method BOT \
query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \
annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi
@@ -271,7 +262,7 @@ no-mirror-refresh-%:
IMP=true # Global parameter to bypass import generation
MIR=true # Global parameter to bypass mirror generation
IMP_LARGE=true # Global parameter to bypass handling of large imports
-PAT=true # Global parameter to bypass pattern generation
+
## ONTOLOGY: bco
## Copy of bco is re-downloaded whenever source changes
@@ -287,7 +278,8 @@ mirror/bco.owl: mirror/bco.trigger
mirror/chebi.trigger: $(SRC)
mirror/chebi.owl: mirror/chebi.trigger
- if [ $(MIR) = true ] && [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then curl -L $(URIBASE)/chebi.owl.gz --create-dirs -o mirror/chebi.owl.gz --retry 4 --max-time 200 && $(ROBOT) convert -i mirror/chebi.owl.gz -o $@.tmp.owl && mv $@.tmp.owl $@; fi
+ if [ $(MIR) = true ] && [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then curl -L $(URIBASE)/chebi.owl.gz --create-dirs -o mirror/chebi.owl.gz --retry 4 --max-time 200 && $(ROBOT) convert -i mirror/chebi.owl.gz -o $@.tmp.owl && \
+ $(ROBOT) remove -i $@.tmp.owl --base-iri $(URIBASE)/CHEBI --axioms external --preserve-structure false --trim false -o $@.tmp.owl && mv $@.tmp.owl $@; fi
.PRECIOUS: mirror/chebi.owl
@@ -341,7 +333,7 @@ mirror/pato.owl: mirror/pato.trigger
mirror/pco.trigger: $(SRC)
mirror/pco.owl: mirror/pco.trigger
- if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/pco.owl --create-dirs -o mirror/pco.owl --retry 4 --max-time 200 && $(ROBOT) convert -i mirror/pco.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi
+ if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/pco/pco-base.owl --create-dirs -o mirror/pco.owl --retry 4 --max-time 200 && $(ROBOT) convert -i mirror/pco.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi
.PRECIOUS: mirror/pco.owl
@@ -359,7 +351,7 @@ mirror/po.owl: mirror/po.trigger
mirror/ro.trigger: $(SRC)
mirror/ro.owl: mirror/ro.trigger
- if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/ro.owl --create-dirs -o mirror/ro.owl --retry 4 --max-time 200 && $(ROBOT) convert -i mirror/ro.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi
+ if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/ro/ro-base.owl --create-dirs -o mirror/ro.owl --retry 4 --max-time 200 && $(ROBOT) convert -i mirror/ro.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi
.PRECIOUS: mirror/ro.owl
@@ -442,71 +434,6 @@ all_reports_onestep: $(SRC) | $(REPORTDIR)
ifneq ($(SPARQL_EXPORTS_ARGS),)
$(ROBOT) query -f tsv -i $< $(SPARQL_EXPORTS_ARGS)
endif
-# ----------------------------------------
-# Patterns (experimental)
-# ----------------------------------------
-
-# Test patterns for schema compliance:
-
-.PHONY: patterns
-patterns: all_imports $(PATTERNDIR)/pattern.owl $(PATTERNDIR)/definitions.owl
-
-.PHONY: pattern_clean
-pattern_clean:
- echo "Not implemented"
-
-.PHONY: pattern_schema_checks
-pattern_schema_checks: update_patterns
- $(PATTERN_TESTER) $(PATTERNDIR)/dosdp-patterns/
-
-#This command is a workaround for the absence of -N and -i in wget of alpine (the one ODK depend on now). It downloads all patterns specified in external.txt
-.PHONY: update_patterns
-update_patterns: .FORCE
- if [ $(PAT) = true ]; then rm -f $(PATTERNDIR)/dosdp-patterns/*.yaml.1 || true; fi
- if [ $(PAT) = true ] && [ -s $(PATTERNDIR)/dosdp-patterns/external.txt ]; then wget -i $(PATTERNDIR)/dosdp-patterns/external.txt --backups=1 -P $(PATTERNDIR)/dosdp-patterns; fi
- if [ $(PAT) = true ]; then rm -f $(PATTERNDIR)/dosdp-patterns/*.yaml.1 || true; fi
-
-
-$(PATTERNDIR)/pattern.owl: pattern_schema_checks update_patterns
- if [ $(PAT) = true ]; then $(DOSDPT) prototype --obo-prefixes true --template=$(PATTERNDIR)/dosdp-patterns --outfile=$@; fi
-
-individual_patterns_default := $(patsubst %.tsv, $(PATTERNDIR)/data/default/%.ofn, $(notdir $(wildcard $(PATTERNDIR)/data/default/*.tsv)))
-pattern_term_lists_default := $(patsubst %.tsv, $(PATTERNDIR)/data/default/%.txt, $(notdir $(wildcard $(PATTERNDIR)/data/default/*.tsv)))
-
-
-
-
-
-# Generating the individual pattern modules and merging them into definitions.owl
-$(PATTERNDIR)/definitions.owl: prepare_patterns update_patterns dosdp_patterns_default
- if [ $(PAT) = true ] && [ "${individual_patterns_names_default}" ] && [ $(PAT) = true ]; then $(ROBOT) merge $(addprefix -i , $(individual_patterns_default)) annotate --ontology-iri $(ONTBASE)/patterns/definitions.owl --version-iri $(ONTBASE)/releases/$(TODAY)/patterns/definitions.owl --annotation owl:versionInfo $(VERSION) -o definitions.ofn && mv definitions.ofn $@; fi
-
-individual_patterns_names_default := $(strip $(patsubst %.tsv,%, $(notdir $(wildcard $(PATTERNDIR)/data/default/*.tsv))))
-dosdp_patterns_default: $(SRC) all_imports .FORCE
- if [ $(PAT) = true ] && [ "${individual_patterns_names_default}" ]; then $(DOSDPT) generate --catalog=catalog-v001.xml --infile=$(PATTERNDIR)/data/default/ --template=$(PATTERNDIR)/dosdp-patterns --batch-patterns="$(individual_patterns_names_default)" --ontology=$< --obo-prefixes=true --outfile=$(PATTERNDIR)/data/default; fi
-
-
-
-
-
-# Generating the seed file from all the TSVs. If Pattern generation is deactivated, we still extract a seed from definitions.owl
-$(PATTERNDIR)/all_pattern_terms.txt: $(pattern_term_lists_default) $(PATTERNDIR)/pattern_owl_seed.txt
- if [ $(PAT) = true ]; then cat $^ | sort | uniq > $@; else $(ROBOT) query --use-graphs true -f csv -i ../patterns/definitions.owl --query ../sparql/terms.sparql $@; fi
-
-$(PATTERNDIR)/pattern_owl_seed.txt: $(PATTERNDIR)/pattern.owl
- if [ $(PAT) = true ]; then $(ROBOT) query --use-graphs true -f csv -i $< --query ../sparql/terms.sparql $@; fi
-
-$(PATTERNDIR)/data/default/%.txt: $(PATTERNDIR)/dosdp-patterns/%.yaml $(PATTERNDIR)/data/default/%.tsv .FORCE
- if [ $(PAT) = true ]; then $(DOSDPT) terms --infile=$(word 2, $^) --template=$< --obo-prefixes=true --outfile=$@; fi
-
-.PHONY: prepare_patterns
-prepare_patterns:
- if [ $(PAT) = true ]; then touch $(PATTERNDIR)/data $(pattern_term_lists_default) ; fi
- if [ $(PAT) = true ]; then touch $(PATTERNDIR)/data $(individual_patterns_default) ; fi
-
-
-
-
# ----------------------------------------
# Release artefacts: export formats
diff --git a/src/ontology/imports/bco_import.owl b/src/ontology/imports/bco_import.owl
index b067eec..ba540a8 100644
--- a/src/ontology/imports/bco_import.owl
+++ b/src/ontology/imports/bco_import.owl
@@ -16,9 +16,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
+
- 2021-12-30
+ 2022-01-01
@@ -78,40 +78,7 @@
-
- definition
- definition
- textual definition
-
- The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- 2012-04-05:
-Barry Smith
-
-The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
-
-Can you fix to something like:
-
-A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
-
-Alan Ruttenberg
-
-Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
-
-On the specifics of the proposed definition:
-
-We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
-
-Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
-
-We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
- PERSON:Daniel Schober
- GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
-
- definition
- definition
- textual definition
-
+
@@ -139,12 +106,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
-
-
@@ -289,12 +250,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
-
-
@@ -2033,7 +1988,6 @@ A and B can be physically interacting but not necessarily. Immediately upstream
-
entity
Entity
Julius Caesar
@@ -3037,51 +2991,6 @@ specimen can later be subject.
-
-
-
-
- organization
- PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods.
-
- An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.
- BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based:
-
-1) there are organization_member_roles (president, treasurer, branch
-editor), with individual persons as bearers
-
-2) there are organization_roles (employer, owner, vendor, patent holder)
-
-3) an organization has a charter / rules / bylaws, which specify what roles
-there are, how they should be realized, and how to modify the
-charter/rules/bylaws themselves.
-
-It is debatable what the organization itself is (some kind of dependent
-continuant or an aggregate of people). This also determines who/what the
-bearer of organization_roles' are. My personal favorite is still to define
-organization as a kind of 'legal entity', but thinking it through leads to
-all kinds of questions that are clearly outside the scope of OBI.
-
-Interestingly enough, it does not seem to matter much where we place
-organization itself, as long as we can subclass it (University, Corporation,
-Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO,
-W3C, University of Oklahoma), and have it play roles.
-
-This leads to my proposal: We define organization through the statements 1 -
-3 above, but without an 'is a' statement for now. We can leave it in its
-current place in the is_a hierarchy (material entity) or move it up to
-'continuant'. We leave further clarifications to BFO, and close this issue
-for now.
- PERSON: Alan Ruttenberg
- PERSON: Bjoern Peters
- PERSON: Philippe Rocca-Serra
- PERSON: Susanna Sansone
- GROUP: OBI
- organization
-
-
-
-
@@ -3208,16 +3117,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
-
-
-
-
- true
-
-
-
-
@@ -3244,14 +3143,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
-
-
- Obsolete Class
-
-
-
-
@@ -3275,12 +3166,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
-
-
-
-
-
-
-
- specimen collection process X
-
-
-
-
-
-
-
-
- material entity A
-
-
-
-
-
-
-
-
-
- material entity B
-
-
-
-
-
-
-
-
- material entity C
-
-
-
-
-
-
-
- specimen collection process Y
-
-
-
-
-
-
-
-
- false
- incorrect identifier format, replaced
-
-
-
-
-
example to be eventually removed
example to be eventually removed
@@ -3359,7 +3189,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
failed exploratory term
The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
Person:Alan Ruttenberg
@@ -3372,7 +3201,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
metadata complete
Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
FossilSpecimen
@@ -3384,7 +3212,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
organizational term
Term created to ease viewing/sort terms for development purpose, and will not be included in a release
term created to ease viewing/sort terms for development purpose, and will not be included in a release
@@ -3397,7 +3224,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
ready for release
Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
ready for release
@@ -3408,7 +3234,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
metadata incomplete
Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
metadata incomplete
@@ -3419,7 +3244,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
uncurated
Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
uncurated
@@ -3430,7 +3254,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
pending final vetting
All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
pending final vetting
@@ -3441,7 +3264,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.
PERSON: Alan Ruttenberg
PERSON: Melanie Courtot
@@ -3453,7 +3275,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
placeholder removed
placeholder removed
@@ -3463,7 +3284,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
terms merged
An editor note should explain what were the merged terms and the reason for the merge.
terms merged
@@ -3474,7 +3294,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
term imported
This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.
term imported
@@ -3485,7 +3304,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
term split
This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.
term split
@@ -3496,7 +3314,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
universal
Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
@@ -3513,7 +3330,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
defined class
A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
@@ -3530,7 +3346,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
named class expression
A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
@@ -3547,7 +3362,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
to be replaced with external ontology term
Terms with this status should eventually replaced with a term from another ontology.
Alan Ruttenberg
@@ -3560,7 +3374,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
requires discussion
A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
Alan Ruttenberg
@@ -3570,32 +3383,6 @@ http://sourceforge.net/p/obi/obi-terms/716/
-
-
-
-
- Thermo Fisher Scientific
-
- An organization that is an American multinational, biotechnology product development company, created in 2006 by the merger of Thermo Electron and Fisher Scientific.
- Chris Stoeckert, Helena Ellis
- https://en.wikipedia.org/wiki/Thermo_Fisher_Scientific
- Thermo Fisher Scientific
-
-
-
-
-
-
-
-
- The set of classes specified by the Darwin Core Type Vocabulary, used to categorize the nature or genre of the resource.
- http://rs.tdwg.org/dwc/terms/
- Darwin Core Type
- True
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
@@ -195,54 +175,25 @@
-
-
- BFO:0000051
- chebi_ontology
- has_part
- false
- has_part
- has part
-
+
-
- RO:0000087
- chebi_ontology
- has_role
- false
- false
- has_role
- has role
-
+
-
-
- chebi_ontology
- is_conjugate_acid_of
- true
- false
- is conjugate acid of
-
+
-
- chebi_ontology
- is_conjugate_base_of
- true
- false
- is conjugate base of
-
+
@@ -286,74 +237,74 @@
PMID:21614077
- Europe PMC
+ Europe PMC
e(-)
- UniProt
+ UniProt
e-
- KEGG_COMPOUND
+ KEGG_COMPOUND
negatron
- IUPAC
+ IUPAC
electron
- ChEBI
+ ChEBI
electron
- IUPAC
+ IUPAC
electron
- KEGG_COMPOUND
+ KEGG_COMPOUND
Elektron
- ChEBI
+ ChEBI
beta
- IUPAC
+ IUPAC
beta(-)
- ChEBI
+ ChEBI
beta-particle
- IUPAC
+ IUPAC
e
- IUPAC
+ IUPAC
@@ -387,13 +338,13 @@
metalloid
- ChEBI
+ ChEBI
metalloids
- ChEBI
+ ChEBI
@@ -416,19 +367,19 @@
inorganic acids
- ChEBI
+ ChEBI
mineral acid
- ChEBI
+ ChEBI
mineral acids
- ChEBI
+ ChEBI
@@ -451,19 +402,19 @@
gas molecular entities
- ChEBI
+ ChEBI
gaseous molecular entities
- ChEBI
+ ChEBI
gaseous molecular entity
- ChEBI
+ ChEBI
@@ -483,7 +434,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Cobalt
- SUBMITTER
+ SUBMITTER
@@ -503,7 +454,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Chromium
- SUBMITTER
+ SUBMITTER
@@ -523,7 +474,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Lithium
- SUBMITTER
+ SUBMITTER
@@ -543,7 +494,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Nickel
- SUBMITTER
+ SUBMITTER
@@ -563,7 +514,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Scandium
- SUBMITTER
+ SUBMITTER
@@ -583,7 +534,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Titanium
- SUBMITTER
+ SUBMITTER
@@ -604,13 +555,13 @@
Wikipedia:https://en.wikipedia.org/wiki/Caesium
- SUBMITTER
+ SUBMITTER
elemental cesium
- SUBMITTER
+ SUBMITTER
@@ -630,7 +581,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Gallium
- SUBMITTER
+ SUBMITTER
@@ -650,7 +601,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Lanthanum
- SUBMITTER
+ SUBMITTER
@@ -670,7 +621,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Niobium
- SUBMITTER
+ SUBMITTER
@@ -690,7 +641,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Rubidium
- SUBMITTER
+ SUBMITTER
@@ -710,7 +661,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Thorium
- SUBMITTER
+ SUBMITTER
@@ -730,7 +681,7 @@
Wikipedia:https://en.wikipedia.org/wiki/Yttrium
- SUBMITTER
+ SUBMITTER
@@ -778,81 +729,81 @@
Beilstein:3587179
- Beilstein
+ Beilstein
CAS:24959-67-9
- ChemIDplus
+ ChemIDplus
CAS:24959-67-9
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:24959-67-9
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:14908
- Gmelin
+ Gmelin
Bromide
- KEGG_COMPOUND
+ KEGG_COMPOUND
bromide
- IUPAC
+ IUPAC
bromide
- UniProt
+ UniProt
bromide(1-)
- IUPAC
+ IUPAC
BROMIDE ION
- PDBeChem
+ PDBeChem
Br(-)
- IUPAC
+ IUPAC
Br-
- KEGG_COMPOUND
+ KEGG_COMPOUND
bromine anion
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -888,50 +839,50 @@
halide ions
- IUPAC
+ IUPAC
HX
- KEGG_COMPOUND
+ KEGG_COMPOUND
Halide
- KEGG_COMPOUND
+ KEGG_COMPOUND
a halide anion
- UniProt
+ UniProt
halide anions
- ChEBI
+ ChEBI
halide(1-)
- ChEBI
+ ChEBI
halides
- ChEBI
+ ChEBI
halogen anion
- ChEBI
+ ChEBI
@@ -1075,333 +1026,333 @@
PMID:22240068
- Europe PMC
+ Europe PMC
PMID:22290316
- Europe PMC
+ Europe PMC
PMID:22342082
- Europe PMC
+ Europe PMC
PMID:22385337
- Europe PMC
+ Europe PMC
PMID:22443779
- Europe PMC
+ Europe PMC
PMID:22560242
- Europe PMC
+ Europe PMC
Reaxys:3587154
- Reaxys
+ Reaxys
AMMONIA
- PDBeChem
+ PDBeChem
Ammonia
- KEGG_COMPOUND
+ KEGG_COMPOUND
ammonia
- IUPAC
+ IUPAC
azane
- IUPAC
+ IUPAC
Ammoniak
- ChemIDplus
+ ChemIDplus
NH3
- IUPAC
+ IUPAC
NH3
- KEGG_COMPOUND
+ KEGG_COMPOUND
NH3
- UniProt
+ UniProt
R-717
- ChEBI
+ ChEBI
[NH3]
- MolBase
+ MolBase
ammoniac
- ChEBI
+ ChEBI
amoniaco
- ChEBI
+ ChEBI
spirit of hartshorn
- ChemIDplus
+ ChemIDplus
Beilstein:3587154
- Beilstein
+ Beilstein
CAS:7664-41-7
- ChemIDplus
+ ChemIDplus
CAS:7664-41-7
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7664-41-7
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Drug_Central:4625
- DrugCentral
+ DrugCentral
Gmelin:79
- Gmelin
+ Gmelin
PMID:110589
- Europe PMC
+ Europe PMC
PMID:11139349
- Europe PMC
+ Europe PMC
PMID:11540049
- Europe PMC
+ Europe PMC
PMID:11746427
- Europe PMC
+ Europe PMC
PMID:11783653
- Europe PMC
+ Europe PMC
PMID:13753780
- Europe PMC
+ Europe PMC
PMID:14663195
- Europe PMC
+ Europe PMC
PMID:15092448
- Europe PMC
+ Europe PMC
PMID:15094021
- Europe PMC
+ Europe PMC
PMID:15554424
- Europe PMC
+ Europe PMC
PMID:15969015
- Europe PMC
+ Europe PMC
PMID:16008360
- Europe PMC
+ Europe PMC
PMID:16050680
- Europe PMC
+ Europe PMC
PMID:16348008
- Europe PMC
+ Europe PMC
PMID:16349403
- Europe PMC
+ Europe PMC
PMID:16614889
- Europe PMC
+ Europe PMC
PMID:16664306
- Europe PMC
+ Europe PMC
PMID:16842901
- Europe PMC
+ Europe PMC
PMID:17025297
- Europe PMC
+ Europe PMC
PMID:17439666
- Europe PMC
+ Europe PMC
PMID:17569513
- Europe PMC
+ Europe PMC
PMID:17737668
- Europe PMC
+ Europe PMC
PMID:18670398
- Europe PMC
+ Europe PMC
PMID:22002069
- Europe PMC
+ Europe PMC
PMID:22081570
- Europe PMC
+ Europe PMC
PMID:22088435
- Europe PMC
+ Europe PMC
PMID:22100291
- Europe PMC
+ Europe PMC
PMID:22130175
- Europe PMC
+ Europe PMC
PMID:22150211
- Europe PMC
+ Europe PMC
@@ -1512,311 +1463,311 @@
Beilstein:3648446
- Beilstein
+ Beilstein
CAS:14808-79-8
- ChemIDplus
+ ChemIDplus
CAS:14808-79-8
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:2120
- Gmelin
+ Gmelin
PMID:11200094
- Europe PMC
+ Europe PMC
PMID:11452993
- Europe PMC
+ Europe PMC
PMID:11581495
- Europe PMC
+ Europe PMC
PMID:11798107
- Europe PMC
+ Europe PMC
PMID:12166931
- Europe PMC
+ Europe PMC
PMID:12668033
- Europe PMC
+ Europe PMC
PMID:14597181
- Europe PMC
+ Europe PMC
PMID:15093386
- Europe PMC
+ Europe PMC
PMID:15984785
- Europe PMC
+ Europe PMC
PMID:16186560
- Europe PMC
+ Europe PMC
PMID:16345535
- Europe PMC
+ Europe PMC
PMID:16347366
- Europe PMC
+ Europe PMC
PMID:16348007
- Europe PMC
+ Europe PMC
PMID:16483812
- Europe PMC
+ Europe PMC
PMID:16534979
- Europe PMC
+ Europe PMC
PMID:16656509
- Europe PMC
+ Europe PMC
PMID:16742508
- Europe PMC
+ Europe PMC
PMID:16742518
- Europe PMC
+ Europe PMC
PMID:17120760
- Europe PMC
+ Europe PMC
PMID:17420092
- Europe PMC
+ Europe PMC
PMID:17439666
- Europe PMC
+ Europe PMC
PMID:17709180
- Europe PMC
+ Europe PMC
PMID:18398178
- Europe PMC
+ Europe PMC
PMID:18815700
- Europe PMC
+ Europe PMC
PMID:18846414
- Europe PMC
+ Europe PMC
PMID:19047345
- Europe PMC
+ Europe PMC
PMID:19244483
- Europe PMC
+ Europe PMC
PMID:19544990
- Europe PMC
+ Europe PMC
PMID:19628332
- Europe PMC
+ Europe PMC
PMID:19812358
- Europe PMC
+ Europe PMC
PMID:30398859
- Europe PMC
+ Europe PMC
Reaxys:3648446
- Reaxys
+ Reaxys
Sulfate
- KEGG_COMPOUND
+ KEGG_COMPOUND
sulfate
- IUPAC
+ IUPAC
sulfate
- UniProt
+ UniProt
tetraoxidosulfate(2-)
- IUPAC
+ IUPAC
tetraoxosulfate(2-)
- IUPAC
+ IUPAC
tetraoxosulfate(VI)
- IUPAC
+ IUPAC
SO4(2-)
- IUPAC
+ IUPAC
SULFATE ION
- PDBeChem
+ PDBeChem
Sulfate anion(2-)
- HMDB
+ HMDB
Sulfate dianion
- HMDB
+ HMDB
Sulfate(2-)
- HMDB
+ HMDB
Sulfuric acid ion(2-)
- HMDB
+ HMDB
[SO4](2-)
- IUPAC
+ IUPAC
sulphate
- ChEBI
+ ChEBI
sulphate ion
- ChEBI
+ ChEBI
@@ -1877,107 +1828,107 @@
CAS:14797-65-0
- ChemIDplus
+ ChemIDplus
CAS:14797-65-0
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:977
- Gmelin
+ Gmelin
Nitrite
- KEGG_COMPOUND
+ KEGG_COMPOUND
dioxidonitrate(1-)
- IUPAC
+ IUPAC
dioxonitrate(1-)
- IUPAC
+ IUPAC
dioxonitrate(III)
- IUPAC
+ IUPAC
nitrite
- IUPAC
+ IUPAC
nitrite
- UniProt
+ UniProt
NITRITE ION
- PDBeChem
+ PDBeChem
NO2
- ChEBI
+ ChEBI
NO2(-)
- IUPAC
+ IUPAC
Nitrit
- ChEBI
+ ChEBI
[NO2](-)
- IUPAC
+ IUPAC
nitrite anion
- ChemIDplus
+ ChemIDplus
nitrite(1-)
- ChemIDplus
+ ChemIDplus
nitrous acid, ion(1-)
- ChemIDplus
+ ChemIDplus
@@ -2024,75 +1975,75 @@
CAS:16984-48-8
- ChemIDplus
+ ChemIDplus
CAS:16984-48-8
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:14905
- Gmelin
+ Gmelin
Fluoride
- KEGG_COMPOUND
+ KEGG_COMPOUND
fluoride
- IUPAC
+ IUPAC
fluoride
- UniProt
+ UniProt
fluoride(1-)
- IUPAC
+ IUPAC
F(-)
- IUPAC
+ IUPAC
F-
- KEGG_COMPOUND
+ KEGG_COMPOUND
FLUORIDE ION
- PDBeChem
+ PDBeChem
Fluoride ion
- KEGG_COMPOUND
+ KEGG_COMPOUND
Fluorine anion
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -2144,95 +2095,95 @@
Beilstein:3587575
- Beilstein
+ Beilstein
CAS:14797-55-8
- ChemIDplus
+ ChemIDplus
CAS:14797-55-8
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:1574
- Gmelin
+ Gmelin
MetaCyc:NITRATE
- SUBMITTER
+ SUBMITTER
nitrate
- IUPAC
+ IUPAC
nitrate
- UniProt
+ UniProt
trioxidonitrate(1-)
- IUPAC
+ IUPAC
trioxonitrate(1-)
- IUPAC
+ IUPAC
trioxonitrate(V)
- IUPAC
+ IUPAC
NITRATE ION
- PDBeChem
+ PDBeChem
NO3
- ChEBI
+ ChEBI
NO3(-)
- IUPAC
+ IUPAC
[NO3](-)
- IUPAC
+ IUPAC
nitrate(1-)
- ChemIDplus
+ ChemIDplus
@@ -2309,136 +2260,136 @@
CAS:7647-01-0
- ChemIDplus
+ ChemIDplus
CAS:7647-01-0
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7647-01-0
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Drug_Central:4568
- DrugCentral
+ DrugCentral
Gmelin:322
- Gmelin
+ Gmelin
PMID:15823700
- Europe PMC
+ Europe PMC
PMID:17492841
- Europe PMC
+ Europe PMC
PMID:22804993
- Europe PMC
+ Europe PMC
Reaxys:1098214
- Reaxys
+ Reaxys
Hydrogen chloride
- KEGG_COMPOUND
+ KEGG_COMPOUND
chlorane
- IUPAC
+ IUPAC
chloridohydrogen
- IUPAC
+ IUPAC
hydrogen chloride
- IUPAC
+ IUPAC
Chlorwasserstoff
- ChEBI
+ ChEBI
HCl
- KEGG_COMPOUND
+ KEGG_COMPOUND
Hydrochloride
- KEGG_COMPOUND
+ KEGG_COMPOUND
Hydrogenchlorid
- ChEBI
+ ChEBI
Wasserstoffchlorid
- ChEBI
+ ChEBI
[HCl]
- IUPAC
+ IUPAC
chlorure d'hydrogene
- ChEBI
+ ChEBI
cloruro de hidrogeno
- ChEBI
+ ChEBI
hydrochloric acid
- ChemIDplus
+ ChemIDplus
@@ -2463,19 +2414,19 @@
Donor
- KEGG_COMPOUND
+ KEGG_COMPOUND
Donator
- ChEBI
+ ChEBI
donneur
- ChEBI
+ ChEBI
@@ -2547,99 +2498,99 @@
Beilstein:3587171
- Beilstein
+ Beilstein
CAS:16887-00-6
- ChemIDplus
+ ChemIDplus
CAS:16887-00-6
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:16887-00-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:14910
- Gmelin
+ Gmelin
UM-BBD_compID:c0884
- UM-BBD
+ UM-BBD
Chloride
- KEGG_COMPOUND
+ KEGG_COMPOUND
chloride
- IUPAC
+ IUPAC
chloride
- UniProt
+ UniProt
chloride(1-)
- IUPAC
+ IUPAC
CHLORIDE ION
- PDBeChem
+ PDBeChem
Chloride ion
- KEGG_COMPOUND
+ KEGG_COMPOUND
Chloride(1-)
- ChemIDplus
+ ChemIDplus
Chlorine anion
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
Cl(-)
- IUPAC
+ IUPAC
Cl-
- KEGG_COMPOUND
+ KEGG_COMPOUND
@@ -2675,26 +2626,26 @@
hydrogen halide
- IUPAC
+ IUPAC
hydrogen halides
- IUPAC
+ IUPAC
HX
- UniProt
+ UniProt
hydrogen halides
- ChEBI
+ ChEBI
@@ -2750,80 +2701,80 @@
CAS:7439-89-6
- ChemIDplus
+ ChemIDplus
CAS:7439-89-6
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7439-89-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Reaxys:4122945
- Reaxys
+ Reaxys
iron
- IUPAC
+ IUPAC
26Fe
- IUPAC
+ IUPAC
Eisen
- ChEBI
+ ChEBI
Fe
- IUPAC
+ IUPAC
Iron
- KEGG_COMPOUND
+ KEGG_COMPOUND
fer
- ChEBI
+ ChEBI
ferrum
- IUPAC
+ IUPAC
hierro
- ChEBI
+ ChEBI
iron
- ChEBI
+ ChEBI
@@ -2874,62 +2825,62 @@
CAS:7439-96-5
- ChemIDplus
+ ChemIDplus
CAS:7439-96-5
- KEGG COMPOUND
+ KEGG COMPOUND
manganese
- IUPAC
+ IUPAC
25Mn
- IUPAC
+ IUPAC
Mangan
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
Manganese
- KEGG_COMPOUND
+ KEGG_COMPOUND
Mn
- IUPAC
+ IUPAC
manganese
- ChEBI
+ ChEBI
manganeso
- ChEBI
+ ChEBI
manganum
- ChEBI
+ ChEBI
@@ -2980,95 +2931,95 @@
Beilstein:3903772
- Beilstein
+ Beilstein
CAS:14265-44-2
- ChemIDplus
+ ChemIDplus
CAS:14265-44-2
- KEGG COMPOUND
+ KEGG COMPOUND
Gmelin:1997
- Gmelin
+ Gmelin
PDBeChem:PO4
- ChEBI
+ ChEBI
Reaxys:3903772
- Reaxys
+ Reaxys
phosphate
- IUPAC
+ IUPAC
tetraoxidophosphate(3-)
- IUPAC
+ IUPAC
tetraoxophosphate(3-)
- IUPAC
+ IUPAC
tetraoxophosphate(V)
- IUPAC
+ IUPAC
Orthophosphate
- KEGG_COMPOUND
+ KEGG_COMPOUND
PHOSPHATE ION
- PDBeChem
+ PDBeChem
PO4(3-)
- IUPAC
+ IUPAC
Phosphate
- KEGG_COMPOUND
+ KEGG_COMPOUND
[PO4](3-)
- IUPAC
+ IUPAC
@@ -3098,62 +3049,62 @@
alkaline earth metals
- IUPAC
+ IUPAC
Erdalkalimetall
- ChEBI
+ ChEBI
Erdalkalimetalle
- ChEBI
+ ChEBI
alkaline earth metal
- ChEBI
+ ChEBI
alkaline-earth metal
- ChEBI
+ ChEBI
alkaline-earth metals
- ChEBI
+ ChEBI
metal alcalino-terreux
- ChEBI
+ ChEBI
metal alcalinoterreo
- ChEBI
+ ChEBI
metales alcalinoterreos
- ChEBI
+ ChEBI
metaux alcalino-terreux
- ChEBI
+ ChEBI
@@ -3181,50 +3132,50 @@
alkali metals
- IUPAC
+ IUPAC
Alkalimetall
- ChEBI
+ ChEBI
Alkalimetalle
- ChEBI
+ ChEBI
alkali metal
- ChEBI
+ ChEBI
metal alcalin
- ChEBI
+ ChEBI
metal alcalino
- ChEBI
+ ChEBI
metales alcalinos
- ChEBI
+ ChEBI
metaux alcalins
- ChEBI
+ ChEBI
@@ -3248,38 +3199,38 @@
Anion
- ChEBI
+ ChEBI
anion
- ChEBI
+ ChEBI
anion
- IUPAC
+ IUPAC
Anionen
- ChEBI
+ ChEBI
aniones
- ChEBI
+ ChEBI
anions
- IUPAC
+ IUPAC
@@ -3306,19 +3257,19 @@
arsenic molecular entity
- ChEBI
+ ChEBI
arsenic compounds
- ChEBI
+ ChEBI
arsenic molecular entities
- ChEBI
+ ChEBI
@@ -3345,50 +3296,50 @@
Base
- ChEBI
+ ChEBI
base
- ChEBI
+ ChEBI
base
- IUPAC
+ IUPAC
Base1
- KEGG_COMPOUND
+ KEGG_COMPOUND
Base2
- KEGG_COMPOUND
+ KEGG_COMPOUND
Basen
- ChEBI
+ ChEBI
Nucleobase
- KEGG_COMPOUND
+ KEGG_COMPOUND
bases
- ChEBI
+ ChEBI
@@ -3415,19 +3366,19 @@
boron molecular entity
- ChEBI
+ ChEBI
boron compounds
- ChEBI
+ ChEBI
boron molecular entities
- ChEBI
+ ChEBI
@@ -3461,56 +3412,56 @@
CAS:7440-43-9
- ChemIDplus
+ ChemIDplus
CAS:7440-43-9
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7440-43-9
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
cadmium
- IUPAC
+ IUPAC
48Cd
- IUPAC
+ IUPAC
Cd
- IUPAC
+ IUPAC
Kadmium
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
cadmio
- ChEBI
+ ChEBI
cadmium
- ChEBI
+ ChEBI
@@ -3536,13 +3487,13 @@
cadmium compounds
- ChEBI
+ ChEBI
cadmium molecular entities
- ChEBI
+ ChEBI
@@ -3584,50 +3535,50 @@
CAS:7440-70-2
- ChemIDplus
+ ChemIDplus
calcium
- IUPAC
+ IUPAC
20Ca
- IUPAC
+ IUPAC
Ca
- IUPAC
+ IUPAC
Calcium
- KEGG_COMPOUND
+ KEGG_COMPOUND
Kalzium
- ChEBI
+ ChEBI
calcio
- ChEBI
+ ChEBI
calcium
- ChEBI
+ ChEBI
@@ -3654,19 +3605,19 @@
calcium molecular entity
- ChEBI
+ ChEBI
calcium compounds
- ChEBI
+ ChEBI
calcium molecular entities
- ChEBI
+ ChEBI
@@ -3706,50 +3657,50 @@
chlorine
- IUPAC
+ IUPAC
17Cl
- IUPAC
+ IUPAC
Chlor
- ChEBI
+ ChEBI
Cl
- IUPAC
+ IUPAC
chlore
- ChEBI
+ ChEBI
chlorine
- ChEBI
+ ChEBI
chlorum
- ChEBI
+ ChEBI
cloro
- ChEBI
+ ChEBI
@@ -3795,19 +3746,19 @@
chromium molecular entity
- ChEBI
+ ChEBI
chromium compounds
- ChEBI
+ ChEBI
chromium molecular entities
- ChEBI
+ ChEBI
@@ -3829,13 +3780,13 @@
cofactor
- IUPAC
+ IUPAC
cofactors
- IUPAC
+ IUPAC
@@ -3861,38 +3812,38 @@
molecular entity
- IUPAC
+ IUPAC
entidad molecular
- IUPAC
+ IUPAC
entidades moleculares
- IUPAC
+ IUPAC
entite moleculaire
- IUPAC
+ IUPAC
molecular entities
- IUPAC
+ IUPAC
molekulare Entitaet
- ChEBI
+ ChEBI
@@ -3919,19 +3870,19 @@
copper molecular entity
- ChEBI
+ ChEBI
copper compounds
- ChEBI
+ ChEBI
copper molecular entities
- ChEBI
+ ChEBI
@@ -3951,7 +3902,7 @@
monoatomic anions
- ChEBI
+ ChEBI
@@ -3971,7 +3922,7 @@
monoatomic cations
- ChEBI
+ ChEBI
@@ -3997,38 +3948,38 @@
enzyme inhibitor
- IUPAC
+ IUPAC
enzyme inhibitors
- ChEBI
+ ChEBI
inhibidor enzimatico
- ChEBI
+ ChEBI
inhibidores enzimaticos
- ChEBI
+ ChEBI
inhibiteur enzymatique
- ChEBI
+ ChEBI
inhibiteurs enzymatiques
- ChEBI
+ ChEBI
@@ -4047,7 +3998,7 @@
chemical entity
- UniProt
+ UniProt
@@ -4067,7 +4018,7 @@
biological function
- ChEBI
+ ChEBI
@@ -4098,38 +4049,38 @@
group
- IUPAC
+ IUPAC
Gruppe
- ChEBI
+ ChEBI
Rest
- ChEBI
+ ChEBI
groupe
- IUPAC
+ IUPAC
grupo
- IUPAC
+ IUPAC
grupos
- IUPAC
+ IUPAC
@@ -4156,19 +4107,19 @@
halogen molecular entity
- ChEBI
+ ChEBI
halogen compounds
- ChEBI
+ ChEBI
halogen molecular entities
- ChEBI
+ ChEBI
@@ -4196,57 +4147,57 @@
halogen
- IUPAC
+ IUPAC
halogens
- IUPAC
+ IUPAC
Halogene
- ChEBI
+ ChEBI
group 17 elements
- ChEBI
+ ChEBI
group VII elements
- ChEBI
+ ChEBI
halogene
- ChEBI
+ ChEBI
halogenes
- ChEBI
+ ChEBI
halogeno
- ChEBI
+ ChEBI
halogenos
- ChEBI
+ ChEBI
@@ -4299,45 +4250,45 @@
oxoacid
- IUPAC
+ IUPAC
oxoacids
- IUPAC
+ IUPAC
oxacids
- ChEBI
+ ChEBI
oxiacids
- ChEBI
+ ChEBI
oxo acid
- ChEBI
+ ChEBI
oxy-acids
- ChEBI
+ ChEBI
oxyacids
- ChEBI
+ ChEBI
@@ -4357,7 +4308,7 @@
inorganic anions
- ChEBI
+ ChEBI
@@ -4381,31 +4332,31 @@
anorganische Verbindungen
- ChEBI
+ ChEBI
inorganic compounds
- ChEBI
+ ChEBI
inorganic entity
- ChEBI
+ ChEBI
inorganic molecular entities
- ChEBI
+ ChEBI
inorganics
- ChEBI
+ ChEBI
@@ -4425,7 +4376,7 @@
inorganic oxides
- ChEBI
+ ChEBI
@@ -4445,7 +4396,7 @@
monoatomic ions
- ChEBI
+ ChEBI
@@ -4469,38 +4420,38 @@
Ion
- ChEBI
+ ChEBI
ion
- ChEBI
+ ChEBI
ion
- IUPAC
+ IUPAC
Ionen
- ChEBI
+ ChEBI
iones
- ChEBI
+ ChEBI
ions
- ChEBI
+ ChEBI
@@ -4527,19 +4478,19 @@
iron molecular entity
- ChEBI
+ ChEBI
iron compounds
- ChEBI
+ ChEBI
iron molecular entities
- ChEBI
+ ChEBI
@@ -4570,20 +4521,20 @@
iron cation
- IUPAC
+ IUPAC
Fe cation
- UniProt
+ UniProt
iron cations
- ChEBI
+ ChEBI
@@ -4619,50 +4570,50 @@
lead
- IUPAC
+ IUPAC
82Pb
- IUPAC
+ IUPAC
Blei
- ChEBI
+ ChEBI
Pb
- IUPAC
+ IUPAC
lead
- ChEBI
+ ChEBI
plomb
- ChEBI
+ ChEBI
plomo
- ChEBI
+ ChEBI
plumbum
- IUPAC
+ IUPAC
@@ -4704,50 +4655,50 @@
CAS:7439-95-4
- ChemIDplus
+ ChemIDplus
Gmelin:16207
- Gmelin
+ Gmelin
magnesium
- IUPAC
+ IUPAC
12Mg
- IUPAC
+ IUPAC
Magnesium
- ChEBI
+ ChEBI
Mg
- IUPAC
+ IUPAC
magnesio
- ChEBI
+ ChEBI
magnesium
- ChEBI
+ ChEBI
@@ -4774,19 +4725,19 @@
magnesium molecular entity
- ChEBI
+ ChEBI
magnesium compounds
- ChEBI
+ ChEBI
magnesium molecular entities
- ChEBI
+ ChEBI
@@ -4813,19 +4764,19 @@
manganese molecular entity
- ChEBI
+ ChEBI
manganese compounds
- ChEBI
+ ChEBI
manganese molecular entities
- ChEBI
+ ChEBI
@@ -4863,74 +4814,74 @@
CAS:7439-97-6
- ChemIDplus
+ ChemIDplus
mercury
- IUPAC
+ IUPAC
80Hg
- IUPAC
+ IUPAC
Hg
- IUPAC
+ IUPAC
Quecksilber
- ChemIDplus
+ ChemIDplus
azogue
- ChEBI
+ ChEBI
hydrargyrum
- IUPAC
+ IUPAC
liquid silver
- ChemIDplus
+ ChemIDplus
mercure
- ChemIDplus
+ ChemIDplus
mercurio
- ChEBI
+ ChEBI
mercury
- ChEBI
+ ChEBI
quicksilver
- ChemIDplus
+ ChemIDplus
@@ -4956,13 +4907,13 @@
mercury compounds
- ChEBI
+ ChEBI
mercury molecular entities
- ChEBI
+ ChEBI
@@ -4987,26 +4938,26 @@
metabolite
- IUPAC
+ IUPAC
metabolites
- ChEBI
+ ChEBI
primary metabolites
- ChEBI
+ ChEBI
secondary metabolites
- ChEBI
+ ChEBI
@@ -5027,13 +4978,13 @@
a metal cation
- UniProt
+ UniProt
metal cations
- ChEBI
+ ChEBI
@@ -5059,13 +5010,13 @@
molybdenum compounds
- ChEBI
+ ChEBI
molybdenum molecular entities
- ChEBI
+ ChEBI
@@ -5102,44 +5053,44 @@
nitrogen
- IUPAC
+ IUPAC
7N
- IUPAC
+ IUPAC
N
- IUPAC
+ IUPAC
Stickstoff
- ChEBI
+ ChEBI
azote
- IUPAC
+ IUPAC
nitrogen
- ChEBI
+ ChEBI
nitrogeno
- ChEBI
+ ChEBI
@@ -5181,65 +5132,65 @@
CAS:7782-77-6
- ChemIDplus
+ ChemIDplus
CAS:7782-77-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:983
- Gmelin
+ Gmelin
dioxonitric acid
- IUPAC
+ IUPAC
hydrogen dioxonitrate(1-)
- IUPAC
+ IUPAC
hydroxidooxidonitrogen
- IUPAC
+ IUPAC
nitrous acid
- IUPAC
+ IUPAC
HNO2
- IUPAC
+ IUPAC
[NO(OH)]
- IUPAC
+ IUPAC
nitrosyl hydroxide
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -5266,56 +5217,56 @@
nonmetal
- IUPAC
+ IUPAC
Nichtmetall
- ChEBI
+ ChEBI
Nichtmetalle
- ChEBI
+ ChEBI
no metal
- ChEBI
+ ChEBI
no metales
- ChEBI
+ ChEBI
non-metal
- ChEBI
+ ChEBI
non-metaux
- ChEBI
+ ChEBI
nonmetal
- ChEBI
+ ChEBI
nonmetals
- ChEBI
+ ChEBI
@@ -5337,13 +5288,13 @@
oxide
- ChEBI
+ ChEBI
oxides
- ChEBI
+ ChEBI
@@ -5384,44 +5335,44 @@
oxygen
- IUPAC
+ IUPAC
8O
- IUPAC
+ IUPAC
O
- IUPAC
+ IUPAC
Sauerstoff
- ChEBI
+ ChEBI
oxigeno
- ChEBI
+ ChEBI
oxygen
- ChEBI
+ ChEBI
oxygene
- ChEBI
+ ChEBI
@@ -5447,13 +5398,13 @@
oxygen molecular entity
- ChEBI
+ ChEBI
oxygen molecular entities
- ChEBI
+ ChEBI
@@ -5547,178 +5498,178 @@
Beilstein:1921286
- Beilstein
+ Beilstein
CAS:7664-38-2
- ChemIDplus
+ ChemIDplus
CAS:7664-38-2
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7664-38-2
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Drug_Central:4478
- DrugCentral
+ DrugCentral
Gmelin:2000
- Gmelin
+ Gmelin
PMID:11455380
- Europe PMC
+ Europe PMC
PMID:15630224
- Europe PMC
+ Europe PMC
PMID:17439666
- Europe PMC
+ Europe PMC
PMID:17518491
- Europe PMC
+ Europe PMC
PMID:22282755
- Europe PMC
+ Europe PMC
PMID:22333268
- Europe PMC
+ Europe PMC
PMID:22381614
- Europe PMC
+ Europe PMC
PMID:22401268
- Europe PMC
+ Europe PMC
Reaxys:1921286
- Reaxys
+ Reaxys
Phosphoric acid
- KEGG_COMPOUND
+ KEGG_COMPOUND
phosphoric acid
- IUPAC
+ IUPAC
tetraoxophosphoric acid
- IUPAC
+ IUPAC
trihydrogen tetraoxophosphate(3-)
- IUPAC
+ IUPAC
trihydroxidooxidophosphorus
- IUPAC
+ IUPAC
H3PO4
- IUPAC
+ IUPAC
Orthophosphoric acid
- KEGG_COMPOUND
+ KEGG_COMPOUND
Phosphate
- KEGG_COMPOUND
+ KEGG_COMPOUND
Phosphorsaeure
- ChEBI
+ ChEBI
Phosphorsaeureloesungen
- ChEBI
+ ChEBI
[PO(OH)3]
- IUPAC
+ IUPAC
acide phosphorique
- ChEBI
+ ChEBI
acidum phosphoricum
- ChEBI
+ ChEBI
orthophosphoric acid
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -5743,7 +5694,7 @@
phosphorus molecular entities
- ChEBI
+ ChEBI
@@ -5791,50 +5742,50 @@
CAS:7440-09-7
- ChemIDplus
+ ChemIDplus
potassium
- IUPAC
+ IUPAC
19K
- IUPAC
+ IUPAC
K
- IUPAC
+ IUPAC
Kalium
- ChemIDplus
+ ChemIDplus
kalium
- IUPAC
+ IUPAC
potasio
- ChEBI
+ ChEBI
potassium
- ChEBI
+ ChEBI
@@ -5860,13 +5811,13 @@
potassium molecular entity
- ChEBI
+ ChEBI
potassium molecular entities
- ChEBI
+ ChEBI
@@ -5892,13 +5843,13 @@
selenium molecular entity
- ChEBI
+ ChEBI
selenium molecular entities
- ChEBI
+ ChEBI
@@ -5925,19 +5876,19 @@
silicon molecular entity
- ChEBI
+ ChEBI
silicon compounds
- ChEBI
+ ChEBI
silicon molecular entities
- ChEBI
+ ChEBI
@@ -5985,56 +5936,56 @@
CAS:7440-23-5
- ChemIDplus
+ ChemIDplus
Gmelin:16221
- Gmelin
+ Gmelin
sodium
- IUPAC
+ IUPAC
11Na
- IUPAC
+ IUPAC
Na
- IUPAC
+ IUPAC
Natrium
- ChemIDplus
+ ChemIDplus
natrium
- IUPAC
+ IUPAC
sodio
- ChemIDplus
+ ChemIDplus
sodium
- ChEBI
+ ChEBI
@@ -6060,13 +6011,13 @@
sodium compounds
- ChEBI
+ ChEBI
sodium molecular entities
- ChEBI
+ ChEBI
@@ -6113,86 +6064,86 @@
CAS:7704-34-9
- ChemIDplus
+ ChemIDplus
CAS:7704-34-9
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
sulfur
- IUPAC
+ IUPAC
16S
- IUPAC
+ IUPAC
Elemental sulfur
- KEGG_COMPOUND
+ KEGG_COMPOUND
S
- IUPAC
+ IUPAC
S
- KEGG_COMPOUND
+ KEGG_COMPOUND
Schwefel
- ChEBI
+ ChEBI
azufre
- ChEBI
+ ChEBI
soufre
- ChEBI
+ ChEBI
sulfur
- ChEBI
+ ChEBI
sulfur
- UniProt
+ UniProt
sulphur
- ChEBI
+ ChEBI
theion
- IUPAC
+ IUPAC
@@ -6218,13 +6169,13 @@
sulfur molecular entity
- ChEBI
+ ChEBI
sulfur molecular entities
- ChEBI
+ ChEBI
@@ -6296,193 +6247,193 @@
CAS:7664-93-9
- ChemIDplus
+ ChemIDplus
CAS:7664-93-9
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7664-93-9
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:2122
- Gmelin
+ Gmelin
PMID:13568755
- Europe PMC
+ Europe PMC
PMID:16122922
- Europe PMC
+ Europe PMC
PMID:19397353
- Europe PMC
+ Europe PMC
PMID:22047659
- Europe PMC
+ Europe PMC
PMID:22136045
- Europe PMC
+ Europe PMC
PMID:22204399
- Europe PMC
+ Europe PMC
PMID:22267186
- Europe PMC
+ Europe PMC
PMID:22296037
- Europe PMC
+ Europe PMC
PMID:22364556
- Europe PMC
+ Europe PMC
PMID:22435616
- Europe PMC
+ Europe PMC
Reaxys:2037554
- Reaxys
+ Reaxys
Sulfuric acid
- KEGG_COMPOUND
+ KEGG_COMPOUND
dihydrogen tetraoxosulfate
- IUPAC
+ IUPAC
dihydroxidodioxidosulfur
- IUPAC
+ IUPAC
hydrogen tetraoxosulfate(2-)
- IUPAC
+ IUPAC
hydrogen tetraoxosulfate(VI)
- IUPAC
+ IUPAC
sulfuric acid
- ChEBI
+ ChEBI
sulfuric acid
- IUPAC
+ IUPAC
tetraoxosulfuric acid
- IUPAC
+ IUPAC
Acide sulfurique
- ChemIDplus
+ ChemIDplus
Acido sulfurico
- ChemIDplus
+ ChemIDplus
Acidum sulfuricum
- ChemIDplus
+ ChemIDplus
H2SO4
- IUPAC
+ IUPAC
Schwefelsaeureloesungen
- ChemIDplus
+ ChemIDplus
[S(OH)2O2]
- MolBase
+ MolBase
[SO2(OH)2]
- IUPAC
+ IUPAC
sulphuric acid
- MolBase
+ MolBase
@@ -6525,62 +6476,62 @@
CAS:7440-31-5
- ChemIDplus
+ ChemIDplus
UM-BBD_compID:c0585
- UM-BBD
+ UM-BBD
tin
- IUPAC
+ IUPAC
50Sn
- IUPAC
+ IUPAC
Sn
- IUPAC
+ IUPAC
Zinn
- ChemIDplus
+ ChemIDplus
estano
- ChEBI
+ ChEBI
etain
- ChEBI
+ ChEBI
stannum
- IUPAC
+ IUPAC
tin
- ChEBI
+ ChEBI
@@ -6606,13 +6557,13 @@
tin compounds
- ChEBI
+ ChEBI
tin molecular entities
- ChEBI
+ ChEBI
@@ -6634,13 +6585,13 @@
micronutrients
- ChEBI
+ ChEBI
trace elements
- ChEBI
+ ChEBI
@@ -6670,68 +6621,68 @@
transition element
- IUPAC
+ IUPAC
Uebergangselement
- ChEBI
+ ChEBI
Uebergangsmetalle
- ChEBI
+ ChEBI
metal de transicion
- ChEBI
+ ChEBI
metal de transition
- ChEBI
+ ChEBI
metales de transicion
- ChEBI
+ ChEBI
metaux de transition
- ChEBI
+ ChEBI
transition element
- ChEBI
+ ChEBI
transition elements
- ChEBI
+ ChEBI
transition metal
- ChEBI
+ ChEBI
transition metals
- ChEBI
+ ChEBI
@@ -6765,44 +6716,44 @@
CAS:7440-61-1
- ChemIDplus
+ ChemIDplus
uranium
- IUPAC
+ IUPAC
92U
- IUPAC
+ IUPAC
U
- IUPAC
+ IUPAC
Uran
- ChEBI
+ ChEBI
uranio
- ChEBI
+ ChEBI
uranium
- ChEBI
+ ChEBI
@@ -6829,19 +6780,19 @@
vanadium molecular entity
- ChEBI
+ ChEBI
vanadium compounds
- ChEBI
+ ChEBI
vanadium molecular entities
- ChEBI
+ ChEBI
@@ -6886,74 +6837,74 @@
CAS:7440-66-6
- ChemIDplus
+ ChemIDplus
CAS:7440-66-6
- KEGG COMPOUND
+ KEGG COMPOUND
Gmelin:16321
- Gmelin
+ Gmelin
zinc
- IUPAC
+ IUPAC
30Zn
- IUPAC
+ IUPAC
Zink
- ChEBI
+ ChEBI
Zn
- IUPAC
+ IUPAC
Zn(II)
- KEGG_COMPOUND
+ KEGG_COMPOUND
Zn2+
- KEGG_COMPOUND
+ KEGG_COMPOUND
cinc
- ChEBI
+ ChEBI
zinc
- ChEBI
+ ChEBI
zincum
- ChEBI
+ ChEBI
@@ -6979,13 +6930,13 @@
zinc compounds
- ChEBI
+ ChEBI
zinc molecular entities
- ChEBI
+ ChEBI
@@ -7032,68 +6983,68 @@
CAS:7440-42-8
- ChemIDplus
+ ChemIDplus
CAS:7440-42-8
- KEGG COMPOUND
+ KEGG COMPOUND
boron
- IUPAC
+ IUPAC
5B
- IUPAC
+ IUPAC
B
- KEGG_COMPOUND
+ KEGG_COMPOUND
Bor
- ChEBI
+ ChEBI
Boron
- KEGG_COMPOUND
+ KEGG_COMPOUND
boracium
- ChEBI
+ ChEBI
bore
- ChEBI
+ ChEBI
boro
- ChEBI
+ ChEBI
boron
- ChEBI
+ ChEBI
@@ -7138,62 +7089,62 @@
CAS:7440-38-2
- ChemIDplus
+ ChemIDplus
CAS:7440-38-2
- KEGG COMPOUND
+ KEGG COMPOUND
arsenic
- IUPAC
+ IUPAC
33As
- IUPAC
+ IUPAC
Arsen
- ChemIDplus
+ ChemIDplus
Arsenic
- KEGG_COMPOUND
+ KEGG_COMPOUND
As
- KEGG_COMPOUND
+ KEGG_COMPOUND
arsenic
- ChEBI
+ ChEBI
arsenico
- ChEBI
+ ChEBI
arsenicum
- ChEBI
+ ChEBI
@@ -7219,8 +7170,12 @@
CHEBI:26627
CHEBI:9091
CAS:7782-49-2
+ DrugBank:DB11135
+ FooDB:FDB013400
+ HMDB:HMDB0001349
KEGG:C01529
WebElements:Se
+ Wikipedia:Selenium
selenium
chebi_ontology
34Se
@@ -7237,56 +7192,56 @@
CAS:7782-49-2
- ChemIDplus
+ ChemIDplus
CAS:7782-49-2
- KEGG COMPOUND
+ NIST Chemistry WebBook
selenium
- IUPAC
+ IUPAC
34Se
- IUPAC
+ IUPAC
Se
- IUPAC
+ IUPAC
Selen
- ChemIDplus
+ ChemIDplus
Selenium
- KEGG_COMPOUND
+ KEGG_COMPOUND
selenio
- ChEBI
+ ChEBI
selenium
- ChEBI
+ ChEBI
@@ -7326,62 +7281,62 @@
CAS:7440-21-3
- ChemIDplus
+ ChemIDplus
silicon
- IUPAC
+ IUPAC
14Si
- IUPAC
+ IUPAC
Si
- IUPAC
+ IUPAC
Si
- KEGG_COMPOUND
+ KEGG_COMPOUND
Silicon
- KEGG_COMPOUND
+ KEGG_COMPOUND
Silizium
- ChEBI
+ ChEBI
silicio
- ChEBI
+ ChEBI
silicium
- ChEBI
+ ChEBI
silicon
- ChEBI
+ ChEBI
@@ -7429,68 +7384,68 @@
CAS:7440-48-4
- ChemIDplus
+ ChemIDplus
CAS:7440-48-4
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7440-48-4
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
cobalt
- IUPAC
+ IUPAC
27Co
- IUPAC
+ IUPAC
Co
- IUPAC
+ IUPAC
Cobalt
- KEGG_COMPOUND
+ KEGG_COMPOUND
Kobalt
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
cobalt
- ChEBI
+ ChEBI
cobalto
- ChEBI
+ ChEBI
cobaltum
- ChEBI
+ ChEBI
@@ -7532,62 +7487,62 @@
CAS:7440-62-2
- ChemIDplus
+ ChemIDplus
CAS:7440-62-2
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7440-62-2
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
vanadium
- IUPAC
+ IUPAC
23V
- IUPAC
+ IUPAC
V
- IUPAC
+ IUPAC
V
- KEGG_COMPOUND
+ KEGG_COMPOUND
Vanadium
- KEGG_COMPOUND
+ KEGG_COMPOUND
vanadio
- ChEBI
+ ChEBI
vanadium
- ChEBI
+ ChEBI
@@ -7637,99 +7592,99 @@
CAS:7440-33-7
- ChemIDplus
+ ChemIDplus
CAS:7440-33-7
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7440-33-7
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16317
- Gmelin
+ Gmelin
Tungsten
- KEGG_COMPOUND
+ KEGG_COMPOUND
tungsten
- IUPAC
+ IUPAC
wolfram
- IUPAC
+ IUPAC
74W
- IUPAC
+ IUPAC
W
- IUPAC
+ IUPAC
Wolfram
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
tungsten atom
- ChEBI
+ ChEBI
tungstene
- ChEBI
+ ChEBI
tungsteno
- ChEBI
+ ChEBI
volframio
- ChEBI
+ ChEBI
wolframio
- ChEBI
+ ChEBI
wolframium
- ChEBI
+ ChEBI
@@ -7775,68 +7730,68 @@
CAS:7440-47-3
- ChemIDplus
+ ChemIDplus
CAS:7440-47-3
- KEGG COMPOUND
+ KEGG COMPOUND
chromium
- IUPAC
+ IUPAC
24Cr
- IUPAC
+ IUPAC
Chrom
- ChemIDplus
+ ChemIDplus
Chromium
- KEGG_COMPOUND
+ KEGG_COMPOUND
Cr
- IUPAC
+ IUPAC
Cr
- KEGG_COMPOUND
+ KEGG_COMPOUND
chrome
- ChEBI
+ ChEBI
chromium
- ChEBI
+ ChEBI
cromo
- ChEBI
+ ChEBI
@@ -7909,188 +7864,188 @@
CAS:7440-02-0
- ChemIDplus
+ ChemIDplus
CAS:7440-02-0
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7440-02-0
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16229
- Gmelin
+ Gmelin
PMID:12756270
- Europe PMC
+ Europe PMC
PMID:14634084
- Europe PMC
+ Europe PMC
PMID:14734778
- Europe PMC
+ Europe PMC
PMID:15165199
- Europe PMC
+ Europe PMC
PMID:19828094
- Europe PMC
+ Europe PMC
PMID:20477134
- Europe PMC
+ Europe PMC
PMID:22762130
- Europe PMC
+ Europe PMC
PMID:23142754
- Europe PMC
+ Europe PMC
PMID:23317102
- Europe PMC
+ Europe PMC
PMID:23692032
- Europe PMC
+ Europe PMC
PMID:23692035
- Europe PMC
+ Europe PMC
PMID:23723488
- Europe PMC
+ Europe PMC
PMID:23834453
- Europe PMC
+ Europe PMC
PMID:23857010
- Europe PMC
+ Europe PMC
PMID:23895079
- Europe PMC
+ Europe PMC
PMID:23909687
- Europe PMC
+ Europe PMC
PMID:9060994
- Europe PMC
+ Europe PMC
PMID:9886425
- Europe PMC
+ Europe PMC
Reaxys:4122946
- Reaxys
+ Reaxys
nickel
- IUPAC
+ IUPAC
28Ni
- IUPAC
+ IUPAC
Ni
- IUPAC
+ IUPAC
Nickel
- ChEBI
+ ChEBI
Raney alloy
- ChemIDplus
+ ChemIDplus
niccolum
- ChEBI
+ ChEBI
nickel
- ChEBI
+ ChEBI
niquel
- ChEBI
+ ChEBI
@@ -8136,74 +8091,74 @@
CAS:7723-14-0
- ChemIDplus
+ ChemIDplus
CAS:7723-14-0
- KEGG COMPOUND
+ KEGG COMPOUND
Gmelin:16235
- Gmelin
+ Gmelin
phosphorus
- IUPAC
+ IUPAC
15P
- IUPAC
+ IUPAC
P
- IUPAC
+ IUPAC
P
- KEGG_COMPOUND
+ KEGG_COMPOUND
Phosphor
- ChEBI
+ ChEBI
Phosphorus
- KEGG_COMPOUND
+ KEGG_COMPOUND
fosforo
- ChEBI
+ ChEBI
phosphore
- ChEBI
+ ChEBI
phosphorus
- ChEBI
+ ChEBI
@@ -8249,74 +8204,74 @@
CAS:7439-98-7
- ChemIDplus
+ ChemIDplus
CAS:7439-98-7
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7439-98-7
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16205
- Gmelin
+ Gmelin
molybdenum
- IUPAC
+ IUPAC
42Mo
- IUPAC
+ IUPAC
Mo
- IUPAC
+ IUPAC
Molybdaen
- ChEBI
+ ChEBI
Molybdenum
- KEGG_COMPOUND
+ KEGG_COMPOUND
molibdeno
- ChEBI
+ ChEBI
molybdene
- ChEBI
+ ChEBI
molybdenum
- ChEBI
+ ChEBI
@@ -8369,80 +8324,80 @@
CAS:7440-50-8
- ChemIDplus
+ ChemIDplus
CAS:7440-50-8
- KEGG COMPOUND
+ KEGG COMPOUND
Gmelin:16269
- Gmelin
+ Gmelin
copper
- IUPAC
+ IUPAC
29Cu
- IUPAC
+ IUPAC
Copper
- KEGG_COMPOUND
+ KEGG_COMPOUND
Cu
- ChEBI
+ ChEBI
Cu
- IUPAC
+ IUPAC
Kupfer
- ChEBI
+ ChEBI
cobre
- ChEBI
+ ChEBI
copper
- ChEBI
+ ChEBI
cuivre
- ChEBI
+ ChEBI
cuprum
- IUPAC
+ IUPAC
@@ -8537,195 +8492,195 @@
CAS:14798-03-9
- ChemIDplus
+ ChemIDplus
CAS:14798-03-9
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:84
- Gmelin
+ Gmelin
PMID:11319011
- Europe PMC
+ Europe PMC
PMID:11341317
- Europe PMC
+ Europe PMC
PMID:12096804
- Europe PMC
+ Europe PMC
PMID:14512268
- Europe PMC
+ Europe PMC
PMID:14879753
- Europe PMC
+ Europe PMC
PMID:16345391
- Europe PMC
+ Europe PMC
PMID:16903292
- Europe PMC
+ Europe PMC
PMID:17392693
- Europe PMC
+ Europe PMC
PMID:18515490
- Europe PMC
+ Europe PMC
PMID:19199063
- Europe PMC
+ Europe PMC
PMID:19596600
- Europe PMC
+ Europe PMC
PMID:19682559
- Europe PMC
+ Europe PMC
PMID:19716251
- Europe PMC
+ Europe PMC
PMID:21993530
- Europe PMC
+ Europe PMC
PMID:22265469
- Europe PMC
+ Europe PMC
PMID:22524020
- Europe PMC
+ Europe PMC
PMID:22562341
- Europe PMC
+ Europe PMC
PMID:22631217
- Europe PMC
+ Europe PMC
Reaxys:16093784
- Reaxys
+ Reaxys
ammonium
- ChEBI
+ ChEBI
ammonium
- IUPAC
+ IUPAC
azanium
- IUPAC
+ IUPAC
Ammonium(1+)
- ChemIDplus
+ ChemIDplus
NH4(+)
- IUPAC
+ IUPAC
NH4(+)
- UniProt
+ UniProt
NH4+
- KEGG_COMPOUND
+ KEGG_COMPOUND
[NH4](+)
- MolBase
+ MolBase
ammonium cation
- ChemIDplus
+ ChemIDplus
ammonium ion
- PDBeChem
+ PDBeChem
@@ -8765,74 +8720,74 @@
CAS:7429-90-5
- ChemIDplus
+ ChemIDplus
CAS:7429-90-5
- KEGG COMPOUND
+ KEGG COMPOUND
Gmelin:16248
- Gmelin
+ Gmelin
aluminium
- IUPAC
+ IUPAC
13Al
- IUPAC
+ IUPAC
Al
- IUPAC
+ IUPAC
Al
- KEGG_COMPOUND
+ KEGG_COMPOUND
Aluminium
- ChEBI
+ ChEBI
Aluminium
- KEGG_COMPOUND
+ KEGG_COMPOUND
aluminio
- ChEBI
+ ChEBI
aluminium
- ChEBI
+ ChEBI
aluminum
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -8903,76 +8858,76 @@
CAS:15438-31-0
- ChemIDplus
+ ChemIDplus
Gmelin:6845
- Gmelin
+ Gmelin
Iron(2+)
- KEGG_COMPOUND
+ KEGG_COMPOUND
iron(2+)
- IUPAC
+ IUPAC
iron(2+) ion
- IUPAC
+ IUPAC
iron(II) cation
- IUPAC
+ IUPAC
FE (II) ION
- PDBeChem
+ PDBeChem
Fe(2+)
- UniProt
+ UniProt
Fe(II)
- KEGG_COMPOUND
+ KEGG_COMPOUND
Fe2+
- KEGG_COMPOUND
+ KEGG_COMPOUND
Ferrous ion
- KEGG_COMPOUND
+ KEGG_COMPOUND
iron ion(2+)
- ChemIDplus
+ ChemIDplus
@@ -9026,100 +8981,100 @@
CAS:7664-39-3
- ChemIDplus
+ ChemIDplus
CAS:7664-39-3
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7664-39-3
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Drug_Central:4499
- DrugCentral
+ DrugCentral
Gmelin:166
- Gmelin
+ Gmelin
Hydrogen fluoride
- KEGG_COMPOUND
+ KEGG_COMPOUND
fluorane
- IUPAC
+ IUPAC
fluoridohydrogen
- IUPAC
+ IUPAC
hydrogen fluoride
- IUPAC
+ IUPAC
Fluoride
- KEGG_COMPOUND
+ KEGG_COMPOUND
Fluorwasserstoff
- ChEBI
+ ChEBI
HF
- IUPAC
+ IUPAC
Hydrogenfluorid
- ChEBI
+ ChEBI
[HF]
- IUPAC
+ IUPAC
fluorure d'hydrogene
- ChEBI
+ ChEBI
hydrofluoric acid
- ChemIDplus
+ ChemIDplus
@@ -9154,56 +9109,56 @@
CAS:7440-57-5
- ChemIDplus
+ ChemIDplus
gold
- IUPAC
+ IUPAC
79Au
- IUPAC
+ IUPAC
Au
- IUPAC
+ IUPAC
Gold
- ChEBI
+ ChEBI
aurum
- IUPAC
+ IUPAC
gold
- ChEBI
+ ChEBI
or
- ChEBI
+ ChEBI
oro
- ChEBI
+ ChEBI
@@ -9245,28 +9200,28 @@
amide
- IUPAC
+ IUPAC
azanide
- IUPAC
+ IUPAC
dihydridonitrate(1-)
- IUPAC
+ IUPAC
NH2(-)
- IUPAC
+ IUPAC
@@ -9303,27 +9258,27 @@
azanediide
- IUPAC
+ IUPAC
hydridonitrate(2-)
- IUPAC
+ IUPAC
NH(2-)
- IUPAC
+ IUPAC
imide
- IUPAC
+ IUPAC
@@ -9356,44 +9311,44 @@
CAS:7439-93-2
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
lithium
- IUPAC
+ IUPAC
3Li
- IUPAC
+ IUPAC
Li
- IUPAC
+ IUPAC
Lithium
- ChEBI
+ ChEBI
lithium
- ChEBI
+ ChEBI
litio
- ChEBI
+ ChEBI
@@ -9420,19 +9375,19 @@
Divalent cation
- KEGG_COMPOUND
+ KEGG_COMPOUND
divalent inorganic cations
- ChEBI
+ ChEBI
monoatomic dications
- ChEBI
+ ChEBI
@@ -9467,56 +9422,56 @@
CAS:7440-74-6
- ChemIDplus
+ ChemIDplus
CAS:7440-74-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16297
- Gmelin
+ Gmelin
indium
- IUPAC
+ IUPAC
49In
- IUPAC
+ IUPAC
In
- IUPAC
+ IUPAC
Indium
- ChEBI
+ ChEBI
indio
- ChEBI
+ ChEBI
indium
- ChEBI
+ ChEBI
@@ -9549,44 +9504,44 @@
CAS:7440-28-0
- ChemIDplus
+ ChemIDplus
CAS:7440-28-0
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16308
- Gmelin
+ Gmelin
thallium
- IUPAC
+ IUPAC
81Tl
- IUPAC
+ IUPAC
Tl
- IUPAC
+ IUPAC
talio
- ChEBI
+ ChEBI
@@ -9622,62 +9577,62 @@
CAS:13494-80-9
- ChemIDplus
+ ChemIDplus
CAS:13494-80-9
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16309
- Gmelin
+ Gmelin
tellurium
- IUPAC
+ IUPAC
52Te
- IUPAC
+ IUPAC
Te
- IUPAC
+ IUPAC
Tellur
- ChEBI
+ ChEBI
tellure
- ChEBI
+ ChEBI
tellurium
- ChEBI
+ ChEBI
teluro
- ChEBI
+ ChEBI
@@ -9739,104 +9694,104 @@
CAS:7440-41-7
- ChemIDplus
+ ChemIDplus
CAS:7440-41-7
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16265
- Gmelin
+ Gmelin
PMID:10858219
- Europe PMC
+ Europe PMC
PMID:11897645
- Europe PMC
+ Europe PMC
PMID:14643414
- Europe PMC
+ Europe PMC
PMID:16951350
- Europe PMC
+ Europe PMC
PMID:18250483
- Europe PMC
+ Europe PMC
PMID:18768897
- Europe PMC
+ Europe PMC
PMID:24912188
- Europe PMC
+ Europe PMC
Reaxys:14617151
- Reaxys
+ Reaxys
beryllium
- IUPAC
+ IUPAC
4Be
- IUPAC
+ IUPAC
Be
- IUPAC
+ IUPAC
Beryllium
- ChEBI
+ ChEBI
berilio
- ChEBI
+ ChEBI
beryllium
- ChEBI
+ ChEBI
@@ -9871,56 +9826,56 @@
CAS:7440-22-4
- ChemIDplus
+ ChemIDplus
silver
- IUPAC
+ IUPAC
47Ag
- IUPAC
+ IUPAC
Ag
- IUPAC
+ IUPAC
Silber
- ChemIDplus
+ ChemIDplus
argent
- ChEBI
+ ChEBI
argentum
- IUPAC
+ IUPAC
plata
- ChEBI
+ ChEBI
silver
- ChEBI
+ ChEBI
@@ -9955,50 +9910,50 @@
antimony
- IUPAC
+ IUPAC
51Sb
- IUPAC
+ IUPAC
Antimon
- ChEBI
+ ChEBI
Sb
- IUPAC
+ IUPAC
antimoine
- ChEBI
+ ChEBI
antimonio
- ChEBI
+ ChEBI
antimony
- ChEBI
+ ChEBI
stibium
- IUPAC
+ IUPAC
@@ -10032,56 +9987,56 @@
caesium
- IUPAC
+ IUPAC
55Cs
- IUPAC
+ IUPAC
Caesium
- ChEBI
+ ChEBI
Cs
- IUPAC
+ IUPAC
Zaesium
- ChEBI
+ ChEBI
caesium
- ChEBI
+ ChEBI
cesio
- ChEBI
+ ChEBI
cesium
- ChEBI
+ ChEBI
cesium
- IUPAC
+ IUPAC
@@ -10114,44 +10069,44 @@
barium
- IUPAC
+ IUPAC
56Ba
- IUPAC
+ IUPAC
Ba
- IUPAC
+ IUPAC
Barium
- ChEBI
+ ChEBI
bario
- ChEBI
+ ChEBI
barium
- ChEBI
+ ChEBI
baryum
- ChEBI
+ ChEBI
@@ -10185,14 +10140,14 @@
elementary particle
- IUPAC
+ IUPAC
elementary particles
- ChEBI
+ ChEBI
@@ -10213,13 +10168,13 @@
atomic entity
- ChEBI
+ ChEBI
monoatomic entities
- ChEBI
+ ChEBI
@@ -10239,7 +10194,7 @@
inorganic hydrides
- ChEBI
+ ChEBI
@@ -10259,7 +10214,7 @@
inorganic groups
- ChEBI
+ ChEBI
@@ -10299,44 +10254,44 @@
atom
- IUPAC
+ IUPAC
atome
- IUPAC
+ IUPAC
atomo
- IUPAC
+ IUPAC
atoms
- ChEBI
+ ChEBI
atomus
- ChEBI
+ ChEBI
element
- ChEBI
+ ChEBI
elements
- ChEBI
+ ChEBI
@@ -10370,56 +10325,56 @@
nucleus
- IUPAC
+ IUPAC
Atomkern
- ChEBI
+ ChEBI
Kern
- ChEBI
+ ChEBI
noyau
- IUPAC
+ IUPAC
noyau atomique
- ChEBI
+ ChEBI
nuclei
- ChEBI
+ ChEBI
nucleo
- IUPAC
+ IUPAC
nucleo atomico
- ChEBI
+ ChEBI
nucleus atomi
- ChEBI
+ ChEBI
@@ -10443,32 +10398,32 @@
nucleon
- IUPAC
+ IUPAC
nucleon
- IUPAC
+ IUPAC
Nukleon
- ChEBI
+ ChEBI
Nukleonen
- ChEBI
+ ChEBI
nucleons
- ChEBI
+ ChEBI
@@ -10490,19 +10445,19 @@
homoatomic entity
- ChEBI
+ ChEBI
homoatomic molecular entities
- ChEBI
+ ChEBI
homoatomic molecular entity
- ChEBI
+ ChEBI
@@ -10523,7 +10478,7 @@
polyatomic anions
- ChEBI
+ ChEBI
@@ -10543,7 +10498,7 @@
nutrients
- ChEBI
+ ChEBI
@@ -10567,25 +10522,25 @@
agrichemical
- ChEBI
+ ChEBI
agrichemicals
- ChEBI
+ ChEBI
agricultural chemicals
- ChEBI
+ ChEBI
agrochemicals
- ChEBI
+ ChEBI
@@ -10606,13 +10561,13 @@
fertiliser
- ChEBI
+ ChEBI
fertilizers
- ChEBI
+ ChEBI
@@ -10638,7 +10593,7 @@
alkali metal molecular entities
- ChEBI
+ ChEBI
@@ -10665,19 +10620,19 @@
lithium molecular entity
- ChEBI
+ ChEBI
lithium compounds
- ChEBI
+ ChEBI
lithium molecular entities
- ChEBI
+ ChEBI
@@ -10706,25 +10661,25 @@
alkaline earth molecular entity
- ChEBI
+ ChEBI
alkaline earth compounds
- ChEBI
+ ChEBI
alkaline earth molecular entities
- ChEBI
+ ChEBI
alkaline-earth compounds
- ChEBI
+ ChEBI
@@ -10750,44 +10705,44 @@
pnictogens
- IUPAC
+ IUPAC
group 15 elements
- ChEBI
+ ChEBI
group V elements
- ChEBI
+ ChEBI
nitrogenoideos
- ChEBI
+ ChEBI
nitrogenoides
- ChEBI
+ ChEBI
pnictogene
- ChEBI
+ ChEBI
pnictogenes
- ChEBI
+ ChEBI
@@ -10822,50 +10777,50 @@
CAS:7440-69-9
- ChemIDplus
+ ChemIDplus
bismuth
- IUPAC
+ IUPAC
83Bi
- IUPAC
+ IUPAC
Bi
- IUPAC
+ IUPAC
Bismut
- ChEBI
+ ChEBI
Wismut
- ChEBI
+ ChEBI
bismuth
- ChEBI
+ ChEBI
bismuto
- ChEBI
+ ChEBI
@@ -10892,13 +10847,13 @@
pnictogen molecular entity
- ChEBI
+ ChEBI
pnictogen molecular entities
- ChEBI
+ ChEBI
@@ -10930,81 +10885,81 @@
PMID:17084588
- Europe PMC
+ Europe PMC
chalcogen
- IUPAC
+ IUPAC
chalcogens
- IUPAC
+ IUPAC
Chalkogen
- ChEBI
+ ChEBI
Chalkogene
- ChEBI
+ ChEBI
anfigeno
- ChEBI
+ ChEBI
anfigenos
- ChEBI
+ ChEBI
calcogeno
- ChEBI
+ ChEBI
calcogenos
- ChEBI
+ ChEBI
chalcogene
- ChEBI
+ ChEBI
chalcogenes
- ChEBI
+ ChEBI
group 16 elements
- ChEBI
+ ChEBI
group VI elements
- ChEBI
+ ChEBI
@@ -11032,19 +10987,19 @@
chalcogen molecular entity
- ChEBI
+ ChEBI
chalcogen compounds
- ChEBI
+ ChEBI
chalcogen molecular entities
- ChEBI
+ ChEBI
@@ -11071,19 +11026,19 @@
tellurium molecular entity
- ChEBI
+ ChEBI
tellurium compounds
- ChEBI
+ ChEBI
tellurium molecular entities
- ChEBI
+ ChEBI
@@ -11108,44 +11063,44 @@
group 14 elements
- IUPAC
+ IUPAC
carbon group element
- ChEBI
+ ChEBI
carbon group elements
- ChEBI
+ ChEBI
carbonoides
- ChEBI
+ ChEBI
cristallogene
- ChEBI
+ ChEBI
cristallogenes
- ChEBI
+ ChEBI
group IV elements
- ChEBI
+ ChEBI
@@ -11178,81 +11133,81 @@
noble gas
- IUPAC
+ IUPAC
noble gases
- IUPAC
+ IUPAC
Edelgas
- ChEBI
+ ChEBI
Edelgase
- ChEBI
+ ChEBI
gas noble
- ChEBI
+ ChEBI
gases nobles
- ChEBI
+ ChEBI
gaz noble
- ChEBI
+ ChEBI
gaz nobles
- ChEBI
+ ChEBI
group 18 elements
- IUPAC
+ IUPAC
group VIII elements
- ChEBI
+ ChEBI
inert gases
- ChEBI
+ ChEBI
noble gas
- ChEBI
+ ChEBI
rare gases
- ChEBI
+ ChEBI
@@ -11275,32 +11230,32 @@
group 13 elements
- IUPAC
+ IUPAC
Element der Borgruppe
- ChEBI
+ ChEBI
boron group element
- ChEBI
+ ChEBI
boron group elements
- ChEBI
+ ChEBI
group III elements
- ChEBI
+ ChEBI
@@ -11323,26 +11278,26 @@
main group elements
- IUPAC
+ IUPAC
Hauptgruppenelement
- ChEBI
+ ChEBI
Hauptgruppenelemente
- ChEBI
+ ChEBI
main group element
- ChEBI
+ ChEBI
@@ -11369,56 +11324,56 @@
lanthanoids
- IUPAC
+ IUPAC
Lanthanoid
- ChEBI
+ ChEBI
Lanthanoide
- ChEBI
+ ChEBI
Lanthanoidengruppe
- ChEBI
+ ChEBI
Lanthanoidenreiche
- ChEBI
+ ChEBI
Ln
- ChEBI
+ ChEBI
lanthanide
- ChEBI
+ ChEBI
lanthanides
- ChEBI
+ ChEBI
lanthanoid
- ChEBI
+ ChEBI
@@ -11447,68 +11402,68 @@
actinoids
- IUPAC
+ IUPAC
Actinoid
- ChEBI
+ ChEBI
Actinoide
- ChEBI
+ ChEBI
Actinoidenelemente
- ChEBI
+ ChEBI
Actinoidengruppe
- ChEBI
+ ChEBI
Aktinoide
- ChEBI
+ ChEBI
Aktinoidenelemente
- ChEBI
+ ChEBI
An
- ChEBI
+ ChEBI
actinide
- ChEBI
+ ChEBI
actinides
- ChEBI
+ ChEBI
actinoid
- ChEBI
+ ChEBI
@@ -11528,14 +11483,14 @@
rare earth metals
- IUPAC
+ IUPAC
rare earth metal
- ChEBI
+ ChEBI
@@ -11569,50 +11524,50 @@
CAS:7440-17-7
- ChemIDplus
+ ChemIDplus
CAS:7440-17-7
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16244
- Gmelin
+ Gmelin
rubidium
- IUPAC
+ IUPAC
37Rb
- IUPAC
+ IUPAC
Rb
- IUPAC
+ IUPAC
rubidio
- ChEBI
+ ChEBI
rubidium
- ChEBI
+ ChEBI
@@ -11644,44 +11599,44 @@
CAS:7440-24-6
- ChemIDplus
+ ChemIDplus
CAS:7440-24-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
strontium
- IUPAC
+ IUPAC
38Sr
- IUPAC
+ IUPAC
Sr
- IUPAC
+ IUPAC
estroncio
- ChEBI
+ ChEBI
strontium
- ChEBI
+ ChEBI
@@ -11716,50 +11671,50 @@
CAS:7440-20-2
- ChemIDplus
+ ChemIDplus
CAS:7440-20-2
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
scandium
- IUPAC
+ IUPAC
21Sc
- IUPAC
+ IUPAC
Sc
- IUPAC
+ IUPAC
Skandium
- ChEBI
+ ChEBI
escandio
- ChEBI
+ ChEBI
scandium
- ChEBI
+ ChEBI
@@ -11794,50 +11749,50 @@
CAS:7440-65-5
- ChemIDplus
+ ChemIDplus
CAS:7440-65-5
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16319
- Gmelin
+ Gmelin
yttrium
- IUPAC
+ IUPAC
39Y
- IUPAC
+ IUPAC
Y
- ChEBI
+ ChEBI
ytrio
- ChEBI
+ ChEBI
yttrium
- ChEBI
+ ChEBI
@@ -11858,20 +11813,20 @@
group 3 elements
- IUPAC
+ IUPAC
scandium group element
- ChEBI
+ ChEBI
scandium group elements
- ChEBI
+ ChEBI
@@ -11908,62 +11863,62 @@
CAS:7439-91-0
- ChemIDplus
+ ChemIDplus
CAS:7439-91-0
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16203
- Gmelin
+ Gmelin
lanthanum
- IUPAC
+ IUPAC
57La
- IUPAC
+ IUPAC
La
- ChEBI
+ ChEBI
Lanthan
- ChEBI
+ ChEBI
lantano
- ChEBI
+ ChEBI
lanthane
- ChEBI
+ ChEBI
lanthanum
- ChEBI
+ ChEBI
@@ -11984,20 +11939,20 @@
group 12 elements
- IUPAC
+ IUPAC
zinc group element
- ChEBI
+ ChEBI
zinc group elements
- ChEBI
+ ChEBI
@@ -12031,56 +11986,56 @@
CAS:7440-32-6
- ChemIDplus
+ ChemIDplus
CAS:7440-32-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
titanium
- IUPAC
+ IUPAC
22Ti
- IUPAC
+ IUPAC
Ti
- IUPAC
+ IUPAC
Titan
- ChEBI
+ ChEBI
titane
- ChEBI
+ ChEBI
titanio
- ChEBI
+ ChEBI
titanium
- ChEBI
+ ChEBI
@@ -12115,62 +12070,62 @@
CAS:7440-03-1
- ChemIDplus
+ ChemIDplus
CAS:7440-03-1
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
niobium
- IUPAC
+ IUPAC
41Nb
- IUPAC
+ IUPAC
Nb
- IUPAC
+ IUPAC
Niob
- ChEBI
+ ChEBI
columbio
- ChEBI
+ ChEBI
columbium
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
niobio
- ChEBI
+ ChEBI
niobium
- ChEBI
+ ChEBI
@@ -12192,20 +12147,20 @@
group 4 elements
- IUPAC
+ IUPAC
titanium group element
- ChEBI
+ ChEBI
titanium group elements
- ChEBI
+ ChEBI
@@ -12227,20 +12182,20 @@
group 5 elements
- IUPAC
+ IUPAC
vanadium group element
- ChEBI
+ ChEBI
vanadium group elements
- ChEBI
+ ChEBI
@@ -12262,20 +12217,20 @@
group 6 elements
- IUPAC
+ IUPAC
chromium group element
- ChEBI
+ ChEBI
chromium group elements
- ChEBI
+ ChEBI
@@ -12297,20 +12252,20 @@
group 7 elements
- IUPAC
+ IUPAC
manganese group element
- ChEBI
+ ChEBI
manganese group elements
- ChEBI
+ ChEBI
@@ -12332,20 +12287,20 @@
group 8 elements
- IUPAC
+ IUPAC
iron group element
- ChEBI
+ ChEBI
iron group elements
- ChEBI
+ ChEBI
@@ -12367,20 +12322,20 @@
group 9 elements
- IUPAC
+ IUPAC
cobalt group element
- ChEBI
+ ChEBI
cobalt group elements
- ChEBI
+ ChEBI
@@ -12402,20 +12357,20 @@
group 10 elements
- IUPAC
+ IUPAC
nickel group element
- ChEBI
+ ChEBI
nickel group elements
- ChEBI
+ ChEBI
@@ -12438,26 +12393,26 @@
group 11 elements
- IUPAC
+ IUPAC
coinage metals
- ChEBI
+ ChEBI
copper group element
- ChEBI
+ ChEBI
copper group elements
- ChEBI
+ ChEBI
@@ -12492,62 +12447,62 @@
CAS:7440-45-1
- ChemIDplus
+ ChemIDplus
CAS:7440-45-1
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:16275
- Gmelin
+ Gmelin
cerium
- ChEBI
+ ChEBI
cerium
- IUPAC
+ IUPAC
58Ce
- IUPAC
+ IUPAC
Ce
- IUPAC
+ IUPAC
Cer
- ChEBI
+ ChEBI
Zer
- ChEBI
+ ChEBI
cerio
- ChEBI
+ ChEBI
@@ -12580,44 +12535,44 @@
CAS:7440-29-1
- ChemIDplus
+ ChemIDplus
CAS:7440-29-1
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:7440-29-1
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
thorium
- IUPAC
+ IUPAC
90Th
- IUPAC
+ IUPAC
Th
- IUPAC
+ IUPAC
torio
- ChEBI
+ ChEBI
@@ -12638,13 +12593,13 @@
oxoacids of sulfur
- ChEBI
+ ChEBI
sulfur oxoacids
- ChEBI
+ ChEBI
@@ -12665,7 +12620,7 @@
elemental sulphur
- ChEBI
+ ChEBI
@@ -12692,14 +12647,14 @@
hydracid
- IUPAC
+ IUPAC
hydracids
- ChEBI
+ ChEBI
@@ -12725,7 +12680,7 @@
pnictogen oxoacids
- ChEBI
+ ChEBI
@@ -12748,7 +12703,7 @@
monoatomic monoanions
- ChEBI
+ ChEBI
@@ -12785,7 +12740,7 @@
atomic chlorine
- ChEBI
+ ChEBI
@@ -12804,7 +12759,7 @@
monoatomic halogens
- ChEBI
+ ChEBI
@@ -12824,13 +12779,13 @@
elemental halogen
- ChEBI
+ ChEBI
elemental halogens
- ChEBI
+ ChEBI
@@ -12851,13 +12806,13 @@
nitrogen oxoacids
- ChEBI
+ ChEBI
oxoacids of nitrogen
- ChEBI
+ ChEBI
@@ -12881,25 +12836,25 @@
phosphorus oxoacid
- ChEBI
+ ChEBI
Oxosaeure des Phosphors
- ChEBI
+ ChEBI
oxoacids of phosphorus
- ChEBI
+ ChEBI
phosphorus oxoacids
- ChEBI
+ ChEBI
@@ -12921,19 +12876,19 @@
nitrogen oxoanion
- ChEBI
+ ChEBI
nitrogen oxoanions
- ChEBI
+ ChEBI
oxoanions of nitrogen
- ChEBI
+ ChEBI
@@ -12954,13 +12909,13 @@
pnictogen oxoanion
- ChEBI
+ ChEBI
pnictogen oxoanions
- ChEBI
+ ChEBI
@@ -12983,19 +12938,19 @@
phosphorus oxoanion
- ChEBI
+ ChEBI
oxoanions of phosphorus
- ChEBI
+ ChEBI
phosphorus oxoanions
- ChEBI
+ ChEBI
@@ -13030,13 +12985,13 @@
elemental pnictogen
- ChEBI
+ ChEBI
elemental pnictogens
- ChEBI
+ ChEBI
@@ -13058,19 +13013,19 @@
sulfur oxoanion
- ChEBI
+ ChEBI
oxoanions of sulfur
- ChEBI
+ ChEBI
sulfur oxoanions
- ChEBI
+ ChEBI
@@ -13097,13 +13052,13 @@
chalcogen oxoacid
- ChEBI
+ ChEBI
chalcogen oxoacids
- ChEBI
+ ChEBI
@@ -13124,13 +13079,13 @@
chalcogen oxoanion
- ChEBI
+ ChEBI
chalcogen oxoanions
- ChEBI
+ ChEBI
@@ -13157,13 +13112,13 @@
transition element molecular entities
- ChEBI
+ ChEBI
transition metal molecular entity
- ChEBI
+ ChEBI
@@ -13189,13 +13144,13 @@
actinoid compounds
- ChEBI
+ ChEBI
actinoid molecular entities
- ChEBI
+ ChEBI
@@ -13220,7 +13175,7 @@
uranium molecular entities
- ChEBI
+ ChEBI
@@ -13240,13 +13195,13 @@
transition element cations
- ChEBI
+ ChEBI
transition metal cation
- ChEBI
+ ChEBI
@@ -13275,37 +13230,37 @@
PMID:21784043
- Europe PMC
+ Europe PMC
elemental metal
- ChEBI
+ ChEBI
elemental metals
- ChEBI
+ ChEBI
metal element
- ChEBI
+ ChEBI
metal elements
- ChEBI
+ ChEBI
metals
- ChEBI
+ ChEBI
@@ -13325,13 +13280,13 @@
s-block element
- ChEBI
+ ChEBI
s-block elements
- ChEBI
+ ChEBI
@@ -13352,13 +13307,13 @@
p-block element
- ChEBI
+ ChEBI
p-block elements
- ChEBI
+ ChEBI
@@ -13379,13 +13334,13 @@
d-block element
- ChEBI
+ ChEBI
d-block elements
- ChEBI
+ ChEBI
@@ -13405,13 +13360,13 @@
f-block element
- ChEBI
+ ChEBI
f-block elements
- ChEBI
+ ChEBI
@@ -13438,13 +13393,13 @@
main group compounds
- ChEBI
+ ChEBI
main group molecular entities
- ChEBI
+ ChEBI
@@ -13469,7 +13424,7 @@
boron group molecular entities
- ChEBI
+ ChEBI
@@ -13495,13 +13450,13 @@
carbon group molecular entity
- ChEBI
+ ChEBI
carbon group molecular entities
- ChEBI
+ ChEBI
@@ -13529,19 +13484,19 @@
noble gas molecular entity
- ChEBI
+ ChEBI
noble gas compounds
- ChEBI
+ ChEBI
noble gas molecular entities
- ChEBI
+ ChEBI
@@ -13568,19 +13523,19 @@
lead molecular entity
- ChEBI
+ ChEBI
lead compounds
- ChEBI
+ ChEBI
lead molecular entities
- ChEBI
+ ChEBI
@@ -13606,13 +13561,13 @@
hydrogen compounds
- ChEBI
+ ChEBI
hydrogen molecular entities
- ChEBI
+ ChEBI
@@ -13635,19 +13590,19 @@
CAS:7440-42-8
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
boron
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
trona elemental boron
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -13675,25 +13630,25 @@
aluminium molecular entity
- ChEBI
+ ChEBI
aluminium compounds
- ChEBI
+ ChEBI
aluminium molecular entities
- ChEBI
+ ChEBI
aluminum compounds
- ChEBI
+ ChEBI
@@ -13714,7 +13669,7 @@
elemental aluminum
- ChEBI
+ ChEBI
@@ -13739,7 +13694,7 @@
zinc group molecular entities
- ChEBI
+ ChEBI
@@ -13767,19 +13722,19 @@
s-block molecular entity
- ChEBI
+ ChEBI
s-block compounds
- ChEBI
+ ChEBI
s-block molecular entities
- ChEBI
+ ChEBI
@@ -13807,19 +13762,19 @@
p-block compounds
- ChEBI
+ ChEBI
p-block molecular entities
- ChEBI
+ ChEBI
p-block molecular entitiy
- ChEBI
+ ChEBI
@@ -13847,19 +13802,19 @@
d-block molecular entity
- ChEBI
+ ChEBI
d-block compounds
- ChEBI
+ ChEBI
d-block molecular entities
- ChEBI
+ ChEBI
@@ -13886,13 +13841,13 @@
f-block compounds
- ChEBI
+ ChEBI
f-block molecular entities
- ChEBI
+ ChEBI
@@ -13933,13 +13888,13 @@
chromium group molecular entity
- ChEBI
+ ChEBI
chromium group molecular entities
- ChEBI
+ ChEBI
@@ -13966,19 +13921,19 @@
tungsten molecular entity
- ChEBI
+ ChEBI
tungsten compounds
- ChEBI
+ ChEBI
tungsten molecular entities
- ChEBI
+ ChEBI
@@ -14005,13 +13960,13 @@
manganese group molecular entity
- ChEBI
+ ChEBI
manganese group molecular entities
- ChEBI
+ ChEBI
@@ -14038,13 +13993,13 @@
iron group molecular entity
- ChEBI
+ ChEBI
iron group molecular entities
- ChEBI
+ ChEBI
@@ -14071,13 +14026,13 @@
copper group molecular entity
- ChEBI
+ ChEBI
copper group molecular entities
- ChEBI
+ ChEBI
@@ -14104,13 +14059,13 @@
vanadium group molecular entity
- ChEBI
+ ChEBI
vanadium group molecular entities
- ChEBI
+ ChEBI
@@ -14137,13 +14092,13 @@
nickel group molecular entity
- ChEBI
+ ChEBI
nickel group molecular entities
- ChEBI
+ ChEBI
@@ -14170,19 +14125,19 @@
nickel molecular entity
- ChEBI
+ ChEBI
nickel compounds
- ChEBI
+ ChEBI
nickel molecular entities
- ChEBI
+ ChEBI
@@ -14209,13 +14164,13 @@
cobalt group molecular entity
- ChEBI
+ ChEBI
cobalt group molecular entities
- ChEBI
+ ChEBI
@@ -14242,13 +14197,13 @@
titanium group molecular entity
- ChEBI
+ ChEBI
titanium group molecular entities
- ChEBI
+ ChEBI
@@ -14275,19 +14230,19 @@
scandium group molecular entity
- ChEBI
+ ChEBI
scandium group compounds
- ChEBI
+ ChEBI
scandium group molecular entities
- ChEBI
+ ChEBI
@@ -14313,13 +14268,13 @@
lanthanoid compounds
- ChEBI
+ ChEBI
lanthanoid molecular entities
- ChEBI
+ ChEBI
@@ -14345,13 +14300,13 @@
beryllium compounds
- ChEBI
+ ChEBI
beryllium molecular entities
- ChEBI
+ ChEBI
@@ -14390,19 +14345,19 @@
cobalt molecular entity
- ChEBI
+ ChEBI
cobalt compounds
- ChEBI
+ ChEBI
cobalt molecular entities
- ChEBI
+ ChEBI
@@ -14425,26 +14380,26 @@
reagent
- IUPAC
+ IUPAC
reactif
- IUPAC
+ IUPAC
reactivo
- IUPAC
+ IUPAC
reagents
- ChEBI
+ ChEBI
@@ -14464,7 +14419,7 @@
macronutrients
- ChEBI
+ ChEBI
@@ -14491,19 +14446,19 @@
silver molecular entity
- ChEBI
+ ChEBI
silver compounds
- ChEBI
+ ChEBI
silver molecular entities
- ChEBI
+ ChEBI
@@ -14542,19 +14497,19 @@
gold molecular entity
- ChEBI
+ ChEBI
gold compounds
- ChEBI
+ ChEBI
gold molecular entities
- ChEBI
+ ChEBI
@@ -14598,7 +14553,7 @@
nitrogen hydrides
- ChEBI
+ ChEBI
@@ -14618,7 +14573,7 @@
azanes
- ChEBI
+ ChEBI
@@ -14689,26 +14644,26 @@
inhibitor
- IUPAC
+ IUPAC
inhibidor
- ChEBI
+ ChEBI
inhibiteur
- ChEBI
+ ChEBI
inhibitors
- ChEBI
+ ChEBI
@@ -14731,26 +14686,26 @@
catalyst
- IUPAC
+ IUPAC
Katalysator
- ChEBI
+ ChEBI
catalizador
- ChEBI
+ ChEBI
catalyseur
- ChEBI
+ ChEBI
@@ -14775,19 +14730,19 @@
oxoanion
- ChEBI
+ ChEBI
oxoacid anions
- ChEBI
+ ChEBI
oxoanions
- ChEBI
+ ChEBI
@@ -14821,19 +14776,19 @@
Pi
- ChEBI
+ ChEBI
phosphate
- ChEBI
+ ChEBI
phosphate ions
- ChEBI
+ ChEBI
@@ -14867,13 +14822,13 @@
pnictogen hydride
- ChEBI
+ ChEBI
pnictogen hydrides
- ChEBI
+ ChEBI
@@ -14894,7 +14849,7 @@
leptons
- ChEBI
+ ChEBI
@@ -14915,7 +14870,7 @@
baryons
- ChEBI
+ ChEBI
@@ -14936,14 +14891,14 @@
fermion
- IUPAC
+ IUPAC
fermions
- ChEBI
+ ChEBI
@@ -14963,7 +14918,7 @@
subatomic particles
- ChEBI
+ ChEBI
@@ -14983,7 +14938,7 @@
composite particles
- ChEBI
+ ChEBI
@@ -15003,7 +14958,7 @@
hadrons
- ChEBI
+ ChEBI
@@ -15023,7 +14978,7 @@
nuclear particle
- IUPAC
+ IUPAC
@@ -15050,7 +15005,7 @@
polyatomic entities
- ChEBI
+ ChEBI
@@ -15071,7 +15026,7 @@
polyatomic ions
- ChEBI
+ ChEBI
@@ -15115,7 +15070,7 @@
monoanions
- ChEBI
+ ChEBI
@@ -15162,7 +15117,7 @@
atomic fluorine
- ChEBI
+ ChEBI
@@ -15185,7 +15140,7 @@
atomic bromine
- ChEBI
+ ChEBI
@@ -15205,13 +15160,13 @@
CAS:7782-49-2
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
elemental selenium
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -15238,19 +15193,19 @@
argon molecular entity
- ChEBI
+ ChEBI
argon compounds
- ChEBI
+ ChEBI
argon molecular entities
- ChEBI
+ ChEBI
@@ -15270,7 +15225,7 @@
inorganic ions
- ChEBI
+ ChEBI
@@ -15290,7 +15245,7 @@
inorganic cations
- ChEBI
+ ChEBI
@@ -15318,44 +15273,44 @@
Cation
- KEGG_COMPOUND
+ KEGG_COMPOUND
cation
- ChEBI
+ ChEBI
cation
- IUPAC
+ IUPAC
Kation
- ChEBI
+ ChEBI
Kationen
- ChEBI
+ ChEBI
cationes
- ChEBI
+ ChEBI
cations
- ChEBI
+ ChEBI
@@ -15382,19 +15337,19 @@
antimony molecular entity
- ChEBI
+ ChEBI
antimony compounds
- ChEBI
+ ChEBI
antimony molecular entities
- ChEBI
+ ChEBI
@@ -15433,19 +15388,19 @@
thallium molecular entity
- ChEBI
+ ChEBI
thallium compounds
- ChEBI
+ ChEBI
thallium molecular entities
- ChEBI
+ ChEBI
@@ -15472,19 +15427,19 @@
gallium molecular entity
- ChEBI
+ ChEBI
gallium compounds
- ChEBI
+ ChEBI
gallium molecular entities
- ChEBI
+ ChEBI
@@ -15511,19 +15466,19 @@
indium molecular entity
- ChEBI
+ ChEBI
indium compounds
- ChEBI
+ ChEBI
indium molecular entities
- ChEBI
+ ChEBI
@@ -15574,19 +15529,19 @@
rubidium molecular entity
- ChEBI
+ ChEBI
rubidium compounds
- ChEBI
+ ChEBI
rubidium molecular entities
- ChEBI
+ ChEBI
@@ -15614,25 +15569,25 @@
caesium molecular entity
- ChEBI
+ ChEBI
caesium compounds
- ChEBI
+ ChEBI
caesium molecular entities
- ChEBI
+ ChEBI
cesium compounds
- ChEBI
+ ChEBI
@@ -15659,19 +15614,19 @@
strontium molecular entity
- ChEBI
+ ChEBI
strontium compounds
- ChEBI
+ ChEBI
strontium molecular entities
- ChEBI
+ ChEBI
@@ -15698,19 +15653,19 @@
barium molecular entity
- ChEBI
+ ChEBI
barium compounds
- ChEBI
+ ChEBI
barium molecular entities
- ChEBI
+ ChEBI
@@ -15743,20 +15698,20 @@
mononuclear parent hydrides
- IUPAC
+ IUPAC
mononuclear hydride
- ChEBI
+ ChEBI
mononuclear hydrides
- IUPAC
+ IUPAC
@@ -15795,19 +15750,19 @@
bismuth molecular entity
- ChEBI
+ ChEBI
bismuth compounds
- ChEBI
+ ChEBI
bismuth molecular entities
- ChEBI
+ ChEBI
@@ -15834,19 +15789,19 @@
scandium molecular entity
- ChEBI
+ ChEBI
scandium compounds
- ChEBI
+ ChEBI
scandium molecular entities
- ChEBI
+ ChEBI
@@ -15873,19 +15828,19 @@
yttrium molecular entity
- ChEBI
+ ChEBI
yttrium compounds
- ChEBI
+ ChEBI
yttrium molecular entities
- ChEBI
+ ChEBI
@@ -15913,19 +15868,19 @@
lanthanum molecular entity
- ChEBI
+ ChEBI
lanthanum compounds
- ChEBI
+ ChEBI
lanthanum molecular entities
- ChEBI
+ ChEBI
@@ -15952,19 +15907,19 @@
titanium molecular entity
- ChEBI
+ ChEBI
titanium compounds
- ChEBI
+ ChEBI
titanium molecular entities
- ChEBI
+ ChEBI
@@ -16048,19 +16003,19 @@
PMID:22280272
- Europe PMC
+ Europe PMC
PMID:7203111
- Europe PMC
+ Europe PMC
PMID:7850774
- Europe PMC
+ Europe PMC
@@ -16099,19 +16054,19 @@
cerium molecular entity
- ChEBI
+ ChEBI
cerium compounds
- ChEBI
+ ChEBI
cerium molecular entities
- ChEBI
+ ChEBI
@@ -16150,13 +16105,13 @@
thorium molecular entity
- ChEBI
+ ChEBI
thorium compounds
- ChEBI
+ ChEBI
@@ -16199,44 +16154,44 @@
Acid
- KEGG_COMPOUND
+ KEGG_COMPOUND
acid
- IUPAC
+ IUPAC
Saeure
- ChEBI
+ ChEBI
Saeuren
- ChEBI
+ ChEBI
acide
- IUPAC
+ IUPAC
acido
- ChEBI
+ ChEBI
acids
- ChEBI
+ ChEBI
@@ -16257,13 +16212,13 @@
chemical compound
- ChEBI
+ ChEBI
heteroatomic molecular entities
- ChEBI
+ ChEBI
@@ -16324,32 +16279,32 @@
Bronsted acid
- IUPAC
+ IUPAC
Bronsted-Saeure
- ChEBI
+ ChEBI
acide de Bronsted
- IUPAC
+ IUPAC
donneur d'hydron
- IUPAC
+ IUPAC
hydron donor
- IUPAC
+ IUPAC
@@ -16374,32 +16329,32 @@
Lewis base
- IUPAC
+ IUPAC
Lewis-Base
- ChEBI
+ ChEBI
base de Lewis
- IUPAC
+ IUPAC
donneur d'une paire d'electrons
- ChEBI
+ ChEBI
electron donor
- ChEBI
+ ChEBI
@@ -16451,60 +16406,60 @@
Gmelin:1999
- Gmelin
+ Gmelin
dihydrogen(tetraoxidophosphate)(1-)
- IUPAC
+ IUPAC
dihydrogenphosphate
- IUPAC
+ IUPAC
dihydrogentetraoxophosphate(1-)
- IUPAC
+ IUPAC
dihydrogentetraoxophosphate(V)
- IUPAC
+ IUPAC
dihydroxidodioxidophosphate(1-)
- IUPAC
+ IUPAC
DIHYDROGENPHOSPHATE ION
- PDBeChem
+ PDBeChem
H2PO4(-)
- IUPAC
+ IUPAC
[PO2(OH)2](-)
- IUPAC
+ IUPAC
@@ -16536,38 +16491,38 @@
HYDROXY GROUP
- PDBeChem
+ PDBeChem
hydroxy
- IUPAC
+ IUPAC
hydroxy group
- UniProt
+ UniProt
-OH
- IUPAC
+ IUPAC
hydroxyl
- ChEBI
+ ChEBI
hydroxyl group
- ChEBI
+ ChEBI
@@ -16636,84 +16591,84 @@
Gmelin:1998
- Gmelin
+ Gmelin
hydrogen(tetraoxidophosphate)(2-)
- IUPAC
+ IUPAC
hydrogenphosphate
- IUPAC
+ IUPAC
hydrogentetraoxophosphate(2-)
- IUPAC
+ IUPAC
hydrogentetraoxophosphate(V)
- IUPAC
+ IUPAC
hydroxidotrioxidophosphate(2-)
- IUPAC
+ IUPAC
HPO4(2-)
- IUPAC
+ IUPAC
HYDROGENPHOSPHATE ION
- PDBeChem
+ PDBeChem
INORGANIC PHOSPHATE GROUP
- PDBeChem
+ PDBeChem
[P(OH)O3](2-)
- MolBase
+ MolBase
[PO3(OH)](2-)
- IUPAC
+ IUPAC
hydrogen phosphate
- ChEBI
+ ChEBI
phosphate
- UniProt
+ UniProt
@@ -16762,66 +16717,66 @@
Gmelin:2121
- Gmelin
+ Gmelin
hydrogen(tetraoxidosulfate)(1-)
- IUPAC
+ IUPAC
hydrogensulfate
- IUPAC
+ IUPAC
hydrogensulfate(1-)
- IUPAC
+ IUPAC
hydrogentetraoxosulfate(1-)
- IUPAC
+ IUPAC
hydrogentetraoxosulfate(VI)
- IUPAC
+ IUPAC
hydroxidotrioxidosulfate(1-)
- IUPAC
+ IUPAC
HSO4(-)
- IUPAC
+ IUPAC
HYDROGEN SULFATE
- PDBeChem
+ PDBeChem
[SO3(OH)](-)
- IUPAC
+ IUPAC
@@ -16845,19 +16800,19 @@
Loesungsmittel
- ChEBI
+ ChEBI
solvant
- ChEBI
+ ChEBI
solvents
- ChEBI
+ ChEBI
@@ -16918,88 +16873,88 @@
CAS:10035-10-6
- ChemIDplus
+ ChemIDplus
CAS:10035-10-6
- KEGG COMPOUND
+ KEGG COMPOUND
CAS:10035-10-6
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:620
- Gmelin
+ Gmelin
bromane
- IUPAC
+ IUPAC
bromidohydrogen
- IUPAC
+ IUPAC
hydrogen bromide
- IUPAC
+ IUPAC
hydrogen bromide
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
Bromwasserstoff
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
HBr
- KEGG_COMPOUND
+ KEGG_COMPOUND
Hydrobromic acid
- KEGG_COMPOUND
+ KEGG_COMPOUND
Hydrogenbromid
- ChEBI
+ ChEBI
[HBr]
- IUPAC
+ IUPAC
bromure d'hydrogene
- ChEBI
+ ChEBI
@@ -17066,112 +17021,112 @@
CAS:7697-37-2
- ChemIDplus
+ ChemIDplus
CAS:7697-37-2
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
Gmelin:1576
- Gmelin
+ Gmelin
PMID:22285512
- Europe PMC
+ Europe PMC
PMID:23402861
- Europe PMC
+ Europe PMC
Reaxys:3587310
- Reaxys
+ Reaxys
Nitric acid
- KEGG_COMPOUND
+ KEGG_COMPOUND
hydrogen trioxonitrate(1-)
- IUPAC
+ IUPAC
hydroxidodioxidonitrogen
- IUPAC
+ IUPAC
trioxonitric acid
- IUPAC
+ IUPAC
HNO3
- IUPAC
+ IUPAC
HONO2
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
Salpetersaeure
- ChemIDplus
+ ChemIDplus
[NO2(OH)]
- IUPAC
+ IUPAC
acide azotique
- ChEBI
+ ChEBI
acide nitrique
- ChemIDplus
+ ChemIDplus
azotic acid
- ChemIDplus
+ ChemIDplus
hydrogen nitrate
- NIST_Chemistry_WebBook
+ NIST_Chemistry_WebBook
@@ -17193,19 +17148,19 @@
Schwefeloxide
- ChEBI
+ ChEBI
oxides of sulfur
- ChEBI
+ ChEBI
sulfur oxides
- ChEBI
+ ChEBI
@@ -17226,14 +17181,14 @@
polar solvent
- IUPAC
+ IUPAC
polar solvents
- ChEBI
+ ChEBI
@@ -17254,7 +17209,7 @@
protogenic solvent
- IUPAC
+ IUPAC
@@ -17288,32 +17243,32 @@
CAS:7440-37-1
- ChemIDplus
+ ChemIDplus
argon
- IUPAC
+ IUPAC
18Ar
- IUPAC
+ IUPAC
Ar
- IUPAC
+ IUPAC
argon
- ChEBI
+ ChEBI
@@ -17348,44 +17303,44 @@
CAS:7440-55-3
- ChemIDplus
+ ChemIDplus
CAS:7440-55-3
- NIST Chemistry WebBook
+ NIST Chemistry WebBook
gallium
- IUPAC
+ IUPAC
31Ga
- IUPAC
+ IUPAC
Ga
- IUPAC
+ IUPAC
galio
- ChEBI
+ ChEBI
gallium
- ChEBI
+ ChEBI
@@ -17428,44 +17383,44 @@
hydrogen
- IUPAC
+ IUPAC
1H
- IUPAC
+ IUPAC
H
- IUPAC
+ IUPAC
Wasserstoff
- ChEBI
+ ChEBI
hidrogeno
- ChEBI
+ ChEBI
hydrogen
- ChEBI
+ ChEBI
hydrogene
- ChEBI
+ ChEBI
@@ -17512,26 +17467,26 @@
onium cations
- IUPAC
+ IUPAC
onium cations
- ChEBI
+ ChEBI
onium ion
- ChEBI
+ ChEBI
onium ions
- ChEBI
+ ChEBI
@@ -17566,27 +17521,27 @@
fluoranium
- IUPAC
+ IUPAC
fluoronium
- IUPAC
+ IUPAC
H2F(+)
- IUPAC
+ IUPAC
[FH2](+)
- ChEBI
+ ChEBI
@@ -17622,33 +17577,33 @@
Gmelin:331
- Gmelin
+ Gmelin
chloranium
- IUPAC
+ IUPAC
chloronium
- IUPAC
+ IUPAC
H2Cl(+)
- IUPAC
+ IUPAC
[ClH2](+)
- IUPAC
+ IUPAC
@@ -17684,33 +17639,33 @@
Gmelin:719134
- Gmelin
+ Gmelin
bromanium
- IUPAC
+ IUPAC
bromonium
- IUPAC
+ IUPAC
H2Br(+)
- IUPAC
+ IUPAC
[BrH2](+)
- ChEBI
+ ChEBI
@@ -17749,49 +17704,49 @@
agente carcinogeno
- ChEBI
+ ChEBI
cancerigene
- ChEBI
+ ChEBI
cancerogene
- ChEBI
+ ChEBI
carcinogen
- ChEBI
+ ChEBI
carcinogene
- ChEBI
+ ChEBI
carcinogenic agents
- ChEBI
+ ChEBI
carcinogeno
- ChEBI
+ ChEBI
carcinogens
- ChEBI
+ ChEBI
@@ -17814,19 +17769,19 @@
alergeno
- ChEBI
+ ChEBI
allergene
- ChEBI
+ ChEBI
allergenic agent
- ChEBI
+ ChEBI
@@ -17867,43 +17822,43 @@
agente neurotoxico
- ChEBI
+ ChEBI
nerve poison
- ChEBI
+ ChEBI
nerve poisons
- ChEBI
+ ChEBI
neurotoxic agent
- ChEBI
+ ChEBI
neurotoxic agents
- ChEBI
+ ChEBI
neurotoxicant
- ChEBI
+ ChEBI
neurotoxins
- ChEBI
+ ChEBI
@@ -17946,19 +17901,19 @@
Nitrogenous compounds
- KEGG_COMPOUND
+ KEGG_COMPOUND
nitrogen compounds
- ChEBI
+ ChEBI
nitrogen molecular entities
- ChEBI
+ ChEBI
@@ -17992,13 +17947,13 @@
etiopathogenetic agent
- ChEBI
+ ChEBI
etiopathogenetic role
- ChEBI
+ ChEBI
@@ -18034,19 +17989,19 @@
farmaco
- ChEBI
+ ChEBI
medicament
- ChEBI
+ ChEBI
pharmaceuticals
- ChEBI
+ ChEBI
@@ -18068,19 +18023,19 @@
antigenic determinant
- ChEBI
+ ChEBI
epitope function
- ChEBI
+ ChEBI
epitope role
- ChEBI
+ ChEBI
@@ -18116,19 +18071,19 @@
nucleophile
- ChEBI
+ ChEBI
nucleophiles
- ChEBI
+ ChEBI
nucleophilic reagents
- ChEBI
+ ChEBI
@@ -18149,7 +18104,7 @@
a divalent metal cation
- UniProt
+ UniProt
@@ -18169,7 +18124,7 @@
a monovalent cation
- UniProt
+ UniProt
@@ -18189,7 +18144,7 @@
adjuvants
- ChEBI
+ ChEBI
@@ -18214,31 +18169,31 @@
PMID:12076975
- SUBMITTER
+ SUBMITTER
PMID:17667957
- SUBMITTER
+ SUBMITTER
PMID:9741578
- SUBMITTER
+ SUBMITTER
RNI
- SUBMITTER
+ SUBMITTER
RNS
- SUBMITTER
+ SUBMITTER
@@ -18280,55 +18235,55 @@
poisonous agent
- ChEBI
+ ChEBI
poisonous agents
- ChEBI
+ ChEBI
poisonous substance
- ChEBI
+ ChEBI
poisonous substances
- ChEBI
+ ChEBI
poisons
- ChEBI
+ ChEBI
toxic agent
- ChEBI
+ ChEBI
toxic agents
- ChEBI
+ ChEBI
toxic substance
- ChEBI
+ ChEBI
toxic substances
- ChEBI
+ ChEBI
@@ -18348,7 +18303,7 @@
eukaryotic metabolites
- ChEBI
+ ChEBI
@@ -18370,7 +18325,7 @@
animal metabolites
- ChEBI
+ ChEBI
@@ -18392,7 +18347,7 @@
mammalian metabolites
- ChEBI
+ ChEBI
@@ -18414,19 +18369,19 @@
Mus musculus metabolite
- ChEBI
+ ChEBI
Mus musculus metabolites
- ChEBI
+ ChEBI
mouse metabolites
- ChEBI
+ ChEBI
@@ -18457,61 +18412,61 @@
S. cerevisiae metabolite
- ChEBI
+ ChEBI
S. cerevisiae metabolites
- ChEBI
+ ChEBI
S. cerevisiae secondary metabolite
- ChEBI
+ ChEBI
S. cerevisiae secondary metabolites
- ChEBI
+ ChEBI
Saccharomyces cerevisiae metabolites
- ChEBI
+ ChEBI
Saccharomyces cerevisiae secondary metabolites
- ChEBI
+ ChEBI
baker's yeast metabolite
- ChEBI
+ ChEBI
baker's yeast metabolites
- ChEBI
+ ChEBI
baker's yeast secondary metabolite
- ChEBI
+ ChEBI
baker's yeast secondary metabolites
- ChEBI
+ ChEBI
@@ -18531,7 +18486,7 @@
prokaryotic metabolites
- ChEBI
+ ChEBI
@@ -18560,55 +18515,55 @@
EC 3.* (hydrolase) inhibitors
- ChEBI
+ ChEBI
EC 3.* inhibitor
- ChEBI
+ ChEBI
EC 3.* inhibitors
- ChEBI
+ ChEBI
EC 3.*.*.* inhibitor
- ChEBI
+ ChEBI
EC 3.*.*.* inhibitors
- ChEBI
+ ChEBI
hydrolase (EC 3.*) inhibitor
- ChEBI
+ ChEBI
hydrolase (EC 3.*) inhibitors
- ChEBI
+ ChEBI
hydrolase inhibitor
- ChEBI
+ ChEBI
hydrolase inhibitors
- ChEBI
+ ChEBI
@@ -18634,43 +18589,43 @@
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
- ChEBI
+ ChEBI
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
- ChEBI
+ ChEBI
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
- ChEBI
+ ChEBI
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
- ChEBI
+ ChEBI
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
- ChEBI
+ ChEBI
EC 3.5.* inhibitor
- ChEBI
+ ChEBI
EC 3.5.* inhibitors
- ChEBI
+ ChEBI
@@ -18694,31 +18649,31 @@
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
- ChEBI
+ ChEBI
EC 3.5.1.* inhibitor
- ChEBI
+ ChEBI
EC 3.5.1.* inhibitors
- ChEBI
+ ChEBI
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
- ChEBI
+ ChEBI
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
- ChEBI
+ ChEBI
@@ -18740,7 +18695,7 @@
fungal metabolites
- ChEBI
+ ChEBI
@@ -18777,19 +18732,19 @@
E.coli metabolite
- ChEBI
+ ChEBI
E.coli metabolites
- ChEBI
+ ChEBI
Escherichia coli metabolites
- ChEBI
+ ChEBI
@@ -18814,25 +18769,25 @@
H. sapiens metabolite
- ChEBI
+ ChEBI
H. sapiens metabolites
- ChEBI
+ ChEBI
Homo sapiens metabolite
- ChEBI
+ ChEBI
Homo sapiens metabolites
- ChEBI
+ ChEBI
@@ -18871,115 +18826,115 @@
EC 3.5.1.4 (amidase) inhibitors
- ChEBI
+ ChEBI
EC 3.5.1.4 inhibitor
- ChEBI
+ ChEBI
EC 3.5.1.4 inhibitors
- ChEBI
+ ChEBI
N-acetylaminohydrolase inhibitor
- ChEBI
+ ChEBI
N-acetylaminohydrolase inhibitors
- ChEBI
+ ChEBI
acylamidase inhibitor
- ChEBI
+ ChEBI
acylamidase inhibitors
- ChEBI
+ ChEBI
acylamide amidohydrolase inhibitor
- ChEBI
+ ChEBI
acylamide amidohydrolase inhibitors
- ChEBI
+ ChEBI
amidase (EC 3.5.1.4) inhibitor
- ChEBI
+ ChEBI
amidase (EC 3.5.1.4) inhibitors
- ChEBI
+ ChEBI
amidase inhibitor
- ChEBI
+ ChEBI
amidase inhibitors
- ChEBI
+ ChEBI
amidohydrolase inhibitor
- ChEBI
+ ChEBI
amidohydrolase inhibitors
- ChEBI
+ ChEBI
deaminase inhibitor
- ChEBI
+ ChEBI
deaminase inhibitors
- ChEBI
+ ChEBI
fatty acylamidase inhibitor
- ChEBI
+ ChEBI
fatty acylamidase inhibitors
- ChEBI
+ ChEBI
@@ -19001,19 +18956,19 @@
dietary component
- ChEBI
+ ChEBI
dietary components
- ChEBI
+ ChEBI
food components
- ChEBI
+ ChEBI
@@ -19034,7 +18989,7 @@
refrigerants
- ChEBI
+ ChEBI
@@ -19054,7 +19009,7 @@
trivalent inorganic anions
- ChEBI
+ ChEBI
@@ -19074,7 +19029,7 @@
divalent inorganic anions
- ChEBI
+ ChEBI
@@ -19094,7 +19049,7 @@
monovalent inorganic anions
- ChEBI
+ ChEBI
@@ -19128,7 +19083,7 @@
algal metabolites
- ChEBI
+ ChEBI
@@ -19169,19 +19124,19 @@
allergenic metal
- ChEBI
+ ChEBI
allergenic metals
- ChEBI
+ ChEBI
metal allergens
- ChEBI
+ ChEBI
diff --git a/src/ontology/imports/envo_import.owl b/src/ontology/imports/envo_import.owl
index 8f36f5b..9973600 100644
--- a/src/ontology/imports/envo_import.owl
+++ b/src/ontology/imports/envo_import.owl
@@ -16,9 +16,9 @@
xmlns:taxslim="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
+
- 2021-12-26
+ 2022-01-01
@@ -54,9 +54,7 @@
-
- definition
-
+
@@ -198,12 +196,6 @@
-
-
-
-
-
-
@@ -216,48 +208,24 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
@@ -296,9 +264,7 @@
-
- has_exact_synonym
-
+
@@ -429,24 +395,6 @@ A continuant cannot have an occurrent as part: use 'participates in'.
-
-
-
- occurs in
- b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
- occurs_in
- unfolds in
- unfolds_in
-
-
-
- Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
-
- occurs in
-
-
-
-
@@ -459,17 +407,6 @@ A continuant cannot have an occurrent as part: use 'participates in'.
-
-
-
- A duck swimming in a pond is partially surrounded by air and partially surrounded by water.
- x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x
- Definition modified from 'surrounded by'.
- partially_surrounded_by
-
-
-
-
@@ -592,27 +529,6 @@ A continuant cannot have an occurrent as part: use 'participates in'.
-
-
-
-
- X outer_layer_of Y iff:
-. X :continuant that bearer_of some PATO:laminar
-. X part_of Y
-. exists Z :surface
-. X has_boundary Z
-. Z boundary_of Y
-
-has_boundary: http://purl.obolibrary.org/obo/RO_0002002
-boundary_of: http://purl.obolibrary.org/obo/RO_0002000
- David Osumi-Sutherland
-
- A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.
- bounding layer of
-
-
-
-
@@ -666,22 +582,6 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000
-
-
-
-
-
- w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
- The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
- For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
-
-
- has component
-
-
-
-
-
@@ -738,20 +638,6 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000
-
-
-
-
-
-
- inverse of ends with
- Chris Mungall
-
- ends
-
-
-
-
@@ -820,25 +706,6 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000
-
-
-
-
- Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat'
-where
-'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview
-
- x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs.
- Pier Buttigieg
- adapted for living in
-
- A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y.
- has habitat
- has habitat
-
-
-
-
@@ -854,19 +721,6 @@ where
-
-
-
- A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
- Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
- Chris Mungall
- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
-
- ecologically related to
-
-
-
-
@@ -979,17 +833,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
-
-
-
- A relationship between a material entity and a process where the material entity has some causal role that influences the process
-
- causal agent in process
-
-
-
-
@@ -1058,19 +901,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
-
-
-
- A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
- Chris Mungall
-
- causal relation between material entity and a process
-
-
-
-
@@ -1247,15 +1077,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
-
-
-
- site
-
-
-
-
@@ -1280,22 +1101,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
material entity
-
-
-
-
- immaterial entity
-
-
-
-
@@ -2118,947 +1929,147 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
+
-
+
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
-
-
-
-
-
+
+
-
-
-
-
- A geographical feature associated with water.
- FTT:131
- FTT:280
- FTT:711
- FTT:761
- FTT:824
- FTT:825
- FTT:826
- FTT:827
- FTT:828
- FTT:829
- Geonames:H.OVF
- fluvial feature
+
+
+
+ A hydrographic feature characterized by the dominance of snow or ice.
+ EcoLexicon:ice
+ FTT:648
+ SWEETRealm:LandIce
+ TGN:21410
+ glacer
+ Ice
+ LandIce
+ glacial landform
+ glacier feature
envoPolar
- hydrographic feature
+ Likely to be depopulated and "glacial" made into a quality or similar.
+ glacial feature
-
+
- A geographical feature associated with water.
+ A hydrographic feature characterized by the dominance of snow or ice.
MA:ma
-
-
- fluvial feature
+
+
+ glacer
ADL:FTT
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
- LTER:695
- EcoLexicon:ocean
- FTT:1019
- FTT:943
- Geonames:H.OCN
- SWEETRealm:Ocean
- TGN:21102
- https://en.wikipedia.org/wiki/Ocean
- Ocean
- ocean
- ocean region
- envoMarine
- envoPolar
- ocean
-
-
-
- LTER:695
- https://vocab.lternet.edu/vocab/vocab/index.php?tema=695&/oceans
+
+
+ Ice
+ NASA:earthrealm
-
-
- Ocean
+
+
+ LandIce
NASA:earthrealm
-
-
- ocean
- Geonames:feature
+
+
+ glacial landform
+ Getty:TGN
-
+
- ocean region
+ glacier feature
ADL:FTT
-
+
-
-
-
+
+
+
+
+
+
+
+
-
-
-
- A large expanse of saline water usually connected with an ocean.
- EcoLexicon:sea
- FTT:233
- FTT:830
- Geonames:H.SEA
- TGN:21103
- https://en.wikipedia.org/wiki/Sea
- Sea
- sea
- channel
- closed sea
- marginal sea
- open sea
- open sound
- open water
- envoMarine
+
+
+
+
+
+
+
+
+
+
+
+ Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
+
+ EcoLexicon:permafrost
+ LTER:408
+ https://en.wikipedia.org/wiki/Permafrost
+ Permafrost
envoPolar
- sea
+ Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material.
+ permafrost
-
+
- A large expanse of saline water usually connected with an ocean.
- https://en.wikipedia.org/wiki/Sea
+ Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
+
+ https://en.wikipedia.org/wiki/Permafrost
-
+
- Sea
+ Permafrost
NASA:earthrealm
-
-
-
- sea
- ADL:FTT
-
-
-
-
- sea
- Geonames:feature
-
-
-
-
- closed sea
- USGS:SDTS
-
-
-
-
- marginal sea
- USGS:SDTS
-
-
-
-
- open sea
- USGS:SDTS
-
-
-
-
- open sound
- USGS:SDTS
-
-
-
-
- open water
- USGS:SDTS
-
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
- ENVO
- ENVO:00000017
- saline hydrographic feature
-
-
-
-
- A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
- https://en.wikipedia.org/wiki/Salinity
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A lake whose water contains a considerable concentration of dissolved salts.
- FTT:221
- FTT:907
- Geonames:H.LKN
- Geonames:H.LKSN
- TGN:21116
- https://en.wikipedia.org/wiki/Saline_lake
- salt lake
- salina
- soda lake
- saline lake
-
-
-
-
- A lake whose water contains a considerable concentration of dissolved salts.
- MA:ma
-
-
-
-
- salt lake
- USGS:SDTS
-
-
-
-
- salina
- USGS:SDTS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A body of water or other liquid of considerable size contained in a depression on a landmass.
- LTER:278
- EcoLexicon:lake
- FTT:221
- FTT:704
- FTT:909
- Geonames:H.LK
- Geonames:H.LKS
- SPIRE:Lake_or_pond
- SWEETRealm:Lake
- TGN:21114
- TGN:21115
- catch basin
- open water
- tarn
- broad
- llyn
- loch
- lochan
- lough
- mere
- mortlake
- pasteuer lake
- envoPolar
- lake
-
-
-
-
- A body of water or other liquid of considerable size contained in a depression on a landmass.
- https://en.wikipedia.org/wiki/Lake
-
-
-
-
- LTER:278
- https://vocab.lternet.edu/vocab/vocab/index.php?tema=278&/lakes
-
-
-
-
- catch basin
- USGS:SDTS
-
-
-
-
- open water
- USGS:SDTS
-
-
-
-
- tarn
- ADL:FTT
-
-
-
-
- lochan
- ADL:FTT
-
-
-
-
- mortlake
- USGS:SDTS
-
-
-
-
- pasteuer lake
- USGS:SDTS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An accumulation of water of varying size.
- hydrographic feature
- EcoLexicon:waterbody
- FTT:131
- FTT:280
- FTT:827
- SWEETRealm:BodyOfWater
- TGN:21100
- TGN:21101
- https://en.wikipedia.org/wiki/Water_body
- aquatic feature
- bodies of water
- body of water
- waterbody
- https://en.wikipedia.org/wiki/ The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.
- water body
-
-
-
-
- An accumulation of water of varying size.
- https://en.wikipedia.org/wiki/Body_of_water
-
-
-
-
- hydrographic feature
- ADL:FTT
-
-
-
-
- bodies of water
- Getty:TGN
-
-
-
-
- body of water
- ADL:FTT
-
-
-
-
- body of water
- Getty:TGN
-
-
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- A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
- EcoLexicon:desert
- FTT:1
- FTT:188
- Geonames:T.DSRT
- LTER:147
- SWEETRealm:Desert
- TGN:21201
- https://en.wikipedia.org/wiki/Desert
- arid region
- envoPolar
- desert area
-
-
-
-
- A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
- USGS:SDTS
-
-
-
-
- arid region
- ADL:FTT
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- A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
- EcoLexicon:valley
- FTT:158
- FTT:166
- FTT:418
- FTT:761
- FTT:811
- FTT:949
- Geonames:T.GRGE
- Geonames:T.VAL
- Geonames:T.VALS
- SWEETRealm:Valley
- TGN:21425
- TGN:21451
- TGN:21452
- TGN:21453
- chasm
- coulee
- dale
- glacial gorge
- glacial trough
- gulch
- gully
- median valley
- shelf valley
- glen
- goe
- gorge
- graben
- hollow
- lavaka
- moat
- ravine
- re-entrant
- seachannel
- strath
- trench
- vale
- water gap
- Valleys are typically located between hills our mountains.
- valley
-
-
-
-
- A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
- ADL:FTT
- https://en.wikipedia.org/wiki/Valley
-
-
-
-
- chasm
- USGS:SDTS
-
-
-
-
- coulee
- USGS:SDTS
-
-
-
-
- dale
- USGS:SDTS
-
-
-
-
- glacial gorge
- USGS:SDTS
-
-
-
-
- glacial trough
- USGS:SDTS
-
-
-
-
- gulch
- USGS:SDTS
-
-
-
-
- gully
- Getty:TGN
-
-
-
-
- gully
- USGS:SDTS
-
-
-
-
- median valley
- ADL:FTT
-
-
-
-
- median valley
- Geonames:feature
-
-
-
-
- shelf valley
- Geonames:feature
-
-
-
-
- glen
- ADL:FTT
-
-
-
-
- glen
- USGS:SDTS
-
-
-
-
- goe
- USGS:SDTS
-
-
-
-
- gorge
- Geonames:feature
-
-
-
-
- gorge
- USGS:SDTS
-
-
-
-
- graben
- USGS:SDTS
-
-
-
-
- hollow
- ADL:FTT
-
-
-
-
- hollow
- Getty:TGN
-
-
-
-
- hollow
- USGS:SDTS
-
-
-
-
- moat
- USGS:SDTS
-
-
-
-
- ravine
- USGS:SDTS
-
-
-
-
- re-entrant
- USGS:SDTS
-
-
-
-
- seachannel
- USGS:SDTS
-
-
-
-
- strath
- USGS:SDTS
-
-
-
-
- trench
- USGS:SDTS
-
-
-
-
- water gap
- USGS:SDTS
-
-
-
-
-
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-
-
-
-
-
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-
- A valley that no longer has a surface flow of water. Typically found in either Karst (limestone) or chalk terrain.
- https://en.wikipedia.org/wiki/Dry_valley
- ENVO
- ENVO:00000128
- dry valley
-
-
-
-
- A valley that no longer has a surface flow of water. Typically found in either Karst (limestone) or chalk terrain.
- https://en.wikipedia.org/wiki/Dry_valley
-
-
-
-
-
-
-
-
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-
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-
- A hydrographic feature characterized by the dominance of snow or ice.
- EcoLexicon:ice
- FTT:648
- SWEETRealm:LandIce
- TGN:21410
- glacer
- Ice
- LandIce
- glacial landform
- glacier feature
- envoPolar
- Likely to be depopulated and "glacial" made into a quality or similar.
- glacial feature
-
-
-
-
- A hydrographic feature characterized by the dominance of snow or ice.
- MA:ma
-
-
-
-
- glacer
- ADL:FTT
-
-
-
-
- Ice
- NASA:earthrealm
-
-
-
-
- LandIce
- NASA:earthrealm
-
-
-
-
- glacial landform
- Getty:TGN
-
-
-
-
- glacier feature
- ADL:FTT
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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-
-
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-
-
- Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
-
- EcoLexicon:permafrost
- LTER:408
- https://en.wikipedia.org/wiki/Permafrost
- Permafrost
- envoPolar
- Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material.
- permafrost
-
-
-
-
- Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
-
- https://en.wikipedia.org/wiki/Permafrost
-
-
-
-
- Permafrost
- NASA:earthrealm
-
-
-
-
-
-
-
+
@@ -3120,187 +2131,59 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Broken rock that appears at the bottom of crags, mountain cliffs or valley shoulders.
- EcoLexicon:scree
- FTT:1078
- FTT:96
- Geonames:T.TAL
- SWEETRealm:Talus
- TGN:21508
- https://en.wikipedia.org/wiki/Scree
- ENVO
- TALUS
- talus slope
- ENVO:00000194
- scree
-
-
-
-
- Broken rock that appears at the bottom of crags, mountain cliffs or valley shoulders.
- https://en.wikipedia.org/wiki/Scree
-
-
-
-
- TALUS
- USGS:SDTS
-
-
-
-
- talus slope
- Geonames:feature
-
-
-
-
- talus slope
- Getty:TGN
-
-
-
-
-
-
-
-
- A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
- https://en.wikipedia.org/wiki/Glacial_valley
- ENVO
- valley
- ENVO:00000248
- envoPolar
- glacial valley
-
-
-
-
- A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
- MA:ma
-
-
-
-
- valley
- USGS:SDTS
-
-
-
-
-
-
-
-
+
+
+
-
+
-
-
+
+
-
-
-
-
-
-
- A landform sunken or depressed below the surrounding area.
- Clarify that this pertains to the planetary crust and create superclass for general topological depressions. https://github.com/EnvironmentOntology/envo/issues/486
- EcoLexicon:depression
- FTT:175
- FTT:215
- FTT:216
- Geonames:T.DPR
- Geonames:T.PAN
- Geonames:T.PANS
- SWEETRealm:Depression
- TGN:21454
- TGN:21497
- TGN:21521
- barrier basin
- depression
- non tidal basin
- pan
- pan (geologic)
- pans
- tidal basin
- depression
-
-
-
-
- A landform sunken or depressed below the surrounding area.
- https://en.wikipedia.org/wiki/Depression_%28geology%29
-
-
-
-
- barrier basin
- USGS:SDTS
-
+ Broken rock that appears at the bottom of crags, mountain cliffs or valley shoulders.
+ EcoLexicon:scree
+ FTT:1078
+ FTT:96
+ Geonames:T.TAL
+ SWEETRealm:Talus
+ TGN:21508
+ https://en.wikipedia.org/wiki/Scree
+ ENVO
+ TALUS
+ talus slope
+ ENVO:00000194
+ scree
+
-
-
- depression
- Geonames:feature
+
+
+ Broken rock that appears at the bottom of crags, mountain cliffs or valley shoulders.
+ https://en.wikipedia.org/wiki/Scree
-
+
- non tidal basin
+ TALUS
USGS:SDTS
-
+
- pan
+ talus slope
Geonames:feature
-
+
- pan
+ talus slope
Getty:TGN
-
-
-
- pan (geologic)
- ADL:FTT
-
-
-
-
- pans
- Geonames:feature
-
-
-
-
- tidal basin
- USGS:SDTS
-
@@ -3342,206 +2225,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
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-
- 2
-
-
-
-
-
- A biome is an ecosystem to which resident ecological communities have evolved adaptations.
- LTER:809
- EcoLexicon:biome
- major habitat type
- EcosytemType
- There has been some concern raised (see Issue #143) about the usefulness of the assertion that organisms have evolved within a given biome. They may have evolved adaptations elsewhere and demonstrating one or the other is often not feasible. Consider relabelling to "environmental system determined by an ecological community" or similar.
- biome
-
-
-
-
- A biome is an ecosystem to which resident ecological communities have evolved adaptations.
- DOI:10.1186/2041-1480-4-43
- https://en.wikipedia.org/wiki/Biome
-
-
-
-
- LTER:809
- https://vocab.lternet.edu/vocab/vocab/index.php?tema=809&/biomes
-
-
-
-
- major habitat type
- WWF:Biome
-
-
-
-
- EcosytemType
- NASA:earthrealm
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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-
-
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-
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-
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-
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-
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-
- A biome which is primarily or completely situated on a landmass.
- LTER:798
- SPIRE:Terrestrial
- terrestrial realm
- terrestrial biome
-
-
-
-
- A biome which is primarily or completely situated on a landmass.
- https://en.wikipedia.org/wiki/Biome#Terrestrial_biomes
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An aquatic biome which is determined by a marine water body.
- SPIRE:Marine
- marine realm
- envoPolar
- This biome includes open-ocean and unprotected coastal ecosystems, characterized by exposure to wave action, tidal fluctuation, and ocean currents as well as systems that largely resemble these. Water in the marine biome is generally within the salinity range of seawater: 30 to 38 ppt.
- marine biome
-
-
-
-
- An aquatic biome which is determined by a marine water body.
-
- ISBN:978-0-618-45504-1
- MA:ma
- https://en.wikipedia.org/wiki/Ocean
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An aquatic biome which is determined by a body of freshwater.
- SPIRE:Freshwater
- freshwater realm
- envoPolar
- freshwater biome
-
-
-
-
- An aquatic biome which is determined by a body of freshwater.
-
- MA:ma
-
-
-
-
@@ -3661,67 +2344,6 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
-
-
-
-
-
-
-
-
-
-
-
-
- A significant accumulation of water which is part of a marine biome.
- body of marine water
- marine waterbody
- Ideas like "significant" are fuzzy and need to be modelled more accurately. The definition is a candidate for review.
- marine water body
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
- EcoLexicon:slope
- SWEETRealm:Slope
- https://en.wikipedia.org/wiki/Slope
- flank
- side
- slope
-
-
-
-
- A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
- MA:ma
-
-
-
-
@@ -3837,34 +2459,6 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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- Water which contains a significant concentration of dissolved salts.
- EcoLexicon:saltwater
- SWEETRealm:SalineWater
- SWEETRealm:SaltWater
- https://en.wikipedia.org/wiki/Saline_water
- salt water
- The threshold salt concentration for classifying water as saline varies, but typically begins at about 1,000 to 3,000 parts salt per million parts water or 0.1–0.3% salt by weight.
- saline water
-
-
-
-
@@ -3874,35 +2468,12 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
LTER:216
SWEETRealm:FreshWater
https://en.wikipedia.org/wiki/Fresh_water
- freshwater
- sweet water
- envoEmpo
- envoPolar
- The lower bound of solute concentration required for water to be considered freshwater is variable, but is always less than that of seawater, and often cited as less than 1 gram of solutes per 1 litre of water.
- fresh water
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A biome which is determined by a water body and which has ecological climax communities adapted to life in or on water.
- LTER:41
- aquatic biome
+ freshwater
+ sweet water
+ envoEmpo
+ envoPolar
+ The lower bound of solute concentration required for water to be considered freshwater is variable, but is always less than that of seawater, and often cited as less than 1 gram of solutes per 1 litre of water.
+ fresh water
@@ -3934,55 +2505,6 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
-
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-
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-
-
-
-
-
-
-
-
-
- Water which has physicochemical properties that have been determined by the processes occuring in a sea or ocean.
- When we have more classes representing the various processes which make seawater seawater, we can further axiomatise this class.
- EcoLexicon:sea_water
- LTER:701
- SWEETRealm:SeaWater
- https://en.wikipedia.org/wiki/Sea_water
- ocean water
- seawater
- This definition refers to water that is actually in a sea or ocean. This water may have a wide range of salinity levels.
- sea water
-
-
-
-
@@ -4125,7 +2647,7 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
- https://en.wikipedia.org/wiki/Manufactured_product
+ https://en.wikipedia.org/wiki/Manufactured_product
@@ -4237,33 +2759,6 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Sand which is part of a desert.
- desert sand
-
-
-
-
@@ -4463,197 +2958,6 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
-
-
-
-
-
-
-
-
-
-
- The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.
- ORCID:0000-0002-4366-3088
- 2010-03-15T11:17:06Z
- ENVO
- ENVO:01000023
- envoPolar
- marine pelagic biome
-
-
-
-
- The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.
- ISBN:978-0-7506-3384-0
-
-
-
-
-
-
-
-
-
- The neritic epipelagic zone biome comprises the marine water column above a continental shelf.
- ORCID:0000-0002-4366-3088
- 2010-03-15T11:19:19Z
- ENVO
- ENVO:01000032
- neritic pelagic zone biome
-
-
-
-
- The neritic epipelagic zone biome comprises the marine water column above a continental shelf.
- ISBN:978-0-444-82619-0
- ISBN:978-0-7506-3384-0
- ORCID:0000-0002-4366-3088
-
-
-
-
-
-
-
-
- The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.
- ORCID:0000-0002-4366-3088
- 2010-03-15T11:19:19Z
- ENVO
- ENVO:01000033
- oceanic pelagic zone biome
-
-
-
-
- The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.
- ISBN:978-0-444-82619-0
- ISBN:978-0-7506-3384-0
- ORCID:0000-0002-4366-3088
-
-
-
-
-
-
-
-
- The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
- ORCID:0000-0002-4366-3088
- 2010-03-15T11:21:03Z
- ENVO
- ENVO:01000034
- oceanic sea surface microlayer biome
-
-
-
-
- The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
- ORCID:0000-0002-4366-3088
- https://en.wikipedia.org/wiki/Sea_surface_microlayer
-
-
-
-
-
-
-
-
- The neritic sea surface microlayer (SML) biome comprises the top 1000 micrometers of marine surface waters occurring above a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
- ORCID:0000-0002-4366-3088
- 2010-03-15T11:22:09Z
- ENVO
- ENVO:01000041
- neritic sea surface microlayer biome
-
-
-
-
- The neritic sea surface microlayer (SML) biome comprises the top 1000 micrometers of marine surface waters occurring above a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
- ORCID:0000-0002-4366-3088
- https://en.wikipedia.org/wiki/Sea_surface_microlayer
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
- ORCID:0000-0002-4366-3088
- 2010-03-16T12:10:50Z
- envoPolar
- marine pelagic feature
-
-
-
-
- A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
- ISBN:978-0-618-45504-1
- ORCID:0000-0002-4366-3088
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A marine biome which is determined by an ocean.
- ORCID:0000-0002-4366-3088
- 2010-03-15T11:23:23Z
- envoPolar
- Ocean biomes are determined by major bodies of saline water, principal components of the hydrosphere. Approximately 71% of the Earth's surface is covered by ocean, a continuous body of water that is customarily divided into several principal oceans and smaller seas. More than half of this area is over 3,000 metres (9,800 ft) deep. Average oceanic salinity is around 35 parts per thousand (ppt) (3.5%), and nearly all seawater has a salinity in the range of 30 to 38 ppt.
- ocean biome
-
-
-
-
- A marine biome which is determined by an ocean.
- ORCID:0000-0002-4366-3088
- https://en.wikipedia.org/wiki/Ocean
-
-
-
-
@@ -4729,146 +3033,7 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
ISBN:978-0-618-45504-1
ORCID:0000-0002-4366-3088
-
-
-
-
-
-
-
-
- A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs.
- ORCID:0000-0002-4366-3088
- 2013-04-07T14:26:46Z
- Preliminary definition.
- shrubland biome
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A desert biome is a terrestrial biome which loses more liquid water by evapotranspiration than is supplied by precipitation and includes communities adapted to these conditions.
- ORCID:0000-0002-4366-3088
- 2013-04-07T14:26:46Z
- SPIRE:Desert_or_dune
- wwfBiome
- Preliminary definition.
- desert biome
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- An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
- ORCID:0000-0002-4366-3088
- 2013-04-07T14:35:18Z
- envoPolar
- A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional.
- environmental condition
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- An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
- DOI:10.1186/2041-1480-4-43
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- A montane shrubland biome is a shrubland biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions.
- ORCID:0000-0002-4366-3088
- 2013-04-07T14:40:32Z
- wwfBiome
- Preliminary definition.
- montane shrubland biome
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- An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
- ORCID:0000-0002-4366-3088
- 2013-04-07T14:45:22Z
- anthrome
- human biome
- Preliminary definition.
- anthropogenic terrestrial biome
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- An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
- http://www.eoearth.org/view/article/150128/
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- An environmental condition in which annual precipitation is less than half of annual potential evapotranspiration.
- ORCID:0000-0002-4366-3088
- 2013-04-24T13:28:18Z
- EcoLexicon:aridity
- envoPolar
- arid
-
+
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- A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
- ORCID:0000-0002-4366-3088
- 2013-10-12T17:21:09Z
- envoPolar
- Unlike biomes, ecoregions are geographically defined entities. ENVO's sister project, GAZ, contains terms for instances of ecoregions (e.g. Beringia lowland tundra). Requests for new terms should be directed to GAZ. ENVO will only contain this top-level class. The class' definition is preliminary and will be aligned to BFO.
- ecoregion
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-
-
-
- A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
- DOI:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
- URL:http://worldwildlife.org/biomes
-
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-
@@ -5156,7 +3294,7 @@ In nature ice is formed either by: (a) the freezing of water, (b) the condensati
Ice which is formed from water.
- https://en.wikipedia.org/wiki/Ice
+ https://en.wikipedia.org/wiki/Ice
@@ -5167,33 +3305,6 @@ In nature ice is formed either by: (a) the freezing of water, (b) the condensati
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- Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
- ORCID:0000-0002-4366-3088
- 2013-10-13T18:32:46Z
- envoPolar
- ENVO contains this top-level class, but all instances will be in GAZ. The definition is preliminary and will be aligned to BFO.
-https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of botany or zoogeographic regions of zoology. Ecozones are characterized by the evolutionary history of the organisms they contain. They are distinct from biomes, also known as major habitat types, which are divisions of the Earth's surface based on life form, or the adaptation of plants and animals to climatic, soil, and other conditions. Biomes are characterized by similar climax vegetation. Each ecozone may include a number of different biomes. A tropical moist broadleaf forest in Central America, for example, may be similar to one in New Guinea in its vegetation type and structure, climate, soils, etc., but these forests are inhabited by plants and animals with very different evolutionary histories.
- ecozone
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-
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- Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
- https://en.wikipedia.org/wiki/ecozone
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- A layer which is part of a lake.
- ORCID:0000-0002-4366-3088
- 2013-10-15T16:57:43Z
- ENVO
- ENVO:01000283
- envoPolar
- Note that this class does not contain metalimnion as a subclass. The metaliminon is classified as a thermocline.
- lake layer
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- A layer that is part of a marine water body.
- ORCID:0000-0002-4366-3088
- envoMarine
- envoPolar
- marine layer
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- A layer that is part of a marine water body.
- ORCID:0000-0002-4366-3088
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- An environmental system which has its properties and dynamics determined by saline water.
- Water (saline)
- envoEmpo
- envoOmics
- envoPolar
- saline water environment
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- Water (saline)
- http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
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- An environment which has a lower temperature than some local or global average.
- envoPolar
- The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'.
- cold environment
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- An anthropogenic environment is an environmental system which is the product of human activity.
- Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.
- anthropogenic environment
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- A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.
- high osmolarity environment
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- An environment whose dynamics are strongly influenced by water.
- aquatic environment
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- A rocky slope is a slope which has a surface primarily composed of rock.
- rocky slope
+ An environment which has a lower temperature than some local or global average.
+ envoPolar
+ The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'.
+ cold environment
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- A marine environment and enviroment which is determined by a marine water body.
- envoPolar
- marine environment
+ An anthropogenic environment is an environmental system which is the product of human activity.
+ Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.
+ anthropogenic environment
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- A marine environment and enviroment which is determined by a marine water body.
- NM:nm
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- An environmental system determined by seawater.
- ocean water environment
- envoPolar
- sea water environment
+ A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.
+ high osmolarity environment
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- The atmospheric boundary layer is the lowest layer of an atmosphere which is strongly influenced by its contact with a planetary surface with strong vertical mixing and in which physical quantities such as flow velocity, temperature, and moisture display rapid fluctuations (turbulence).
- planetary boundary layer
- envoPolar
- atmospheric boundary layer
+ An environment whose dynamics are strongly influenced by water.
+ aquatic environment
@@ -5796,99 +3616,6 @@ https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of
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- A talus slope is a slope which has a surface layer composed of scree.
- scree slope
- talus slope
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- An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
- ORCID:0000-0002-4366-3088
- LTER:350
- envoPolar
- The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.
- montane
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- An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
- https://en.wikipedia.org/wiki/Altitudinal_zonation
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-
- The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.
- https://en.wikipedia.org/wiki/Altitudinal_zonation
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- An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
- ORCID:0000-0002-4366-3088
- envoPolar
- Depending on the latitude (and, to a lesser extent, other factors), the actual location of the zones where these conditions are in effect will change.
- altitudinal condition
-
-
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-
- An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
- https://en.wikipedia.org/wiki/Altitudinal_zonation
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- A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
- environmental area
- envoPolar
- Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.
- environmental zone
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- A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
- ORCID:0000-0002-4366-3088
- boundary layer
- boundary layer
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-
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- A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
- https://en.wikipedia.org/wiki/Boundary_layer
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- boundary layer
- http://www.eionet.europa.eu/gemet/concept/976
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- A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow.
- lentic water body
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- Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
- condensation
- envoAtmo
- envoPolar
- "process" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)
- hydrological condensation process
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- Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
- https://en.wikipedia.org/wiki/Condensation
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- A landmass which is part of a planet.
- land
- ground
- planetary landmass
+ Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
+ condensation
+ envoAtmo
+ envoPolar
+ "process" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)
+ hydrological condensation process
-
+
- A landmass which is part of a planet.
- Adpated from https://en.wikipedia.org/wiki/Planetary_surface
+ Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
+ https://en.wikipedia.org/wiki/Condensation
@@ -6324,83 +3937,6 @@ https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of
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- A mass of water.
- water mass
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- A coast is the area where land meets the sea, ocean, or lake.
- Used for both marine and lake coasts. The boundary of the coast is fuzzy and it overlaps both the water body and land in quesiton. Compared to 'shore'
- coast
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- A coast is the area where land meets the sea, ocean, or lake.
- https://en.wikipedia.org/wiki/Coast
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- An environmental system which can sustain and allow the growth of an ecological population.
- EcoLexicon:habitat
- LTER:238
- SWEETRealm:Habitat
- https://en.wikipedia.org/wiki/Habitat
- A habitat's specificity to an ecological population differentiates it from other environment classes.
- habitat
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- An environmental system which can sustain and allow the growth of an ecological population.
- EnvO:EnvO
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- An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
- The range of entities that are considered "barren land" are not exhaustive, making axiomatisation risky at this stage.
- Barren Land (Rock/Sand/Clay)
- NLCD:31
- envoPolar
- nlcd2011
- According to the NLCD 2011, areas of barren land generally have less than 15% cover of vegetation. A specific threshold is not asserted in this definition.
- area of barren land
-
-
-
-
- An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
- https://en.wikipedia.org/wiki/Exosphere
- https://en.wikipedia.org/wiki/Planetary_surface
- https://www.mrlc.gov/nlcd11_leg.php
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- An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
- Add qualities such as spherical. Request NTRs if not available in PATO.
- envoAstro
- envoPolar
- star
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- An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
- https://en.wikipedia.org/wiki/Star
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- A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
- envoPolar
- This class can refer to the flow of any material in a liquid phase.
- mass liquid flow
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- A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
- https://en.wikipedia.org/wiki/Wind
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- A process during which a volume of water is transported due to a disequilibria in physical forces.
- environmental_hazards
- water flow process
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- A lake which has formed as the result of processes that are not or are only minimally driven by human activity.
- This class is to be filled by inference.
- natural lake
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- A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
- EM radiation
- environmental_hazards
- envoAstro
- Note that this class is concerned only with active radiative processes: static electric and magnetic fields are not inlcuded. All electromagnetic radiation carries radiant energy.
- electromagnetic radiation
-
-
-
-
- A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
- https://en.wikipedia.org/wiki/Electromagnetic_radiation
-
-
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@@ -8162,114 +5521,13 @@ https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of
A process during which microscopic solid or liquid objects are formed.
- particle formation
- particulate matter formation process
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- A process during which microscopic solid or liquid objects are formed.
- https://en.wikipedia.org/wiki/Particulates
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- An aerosol formation process which occurs in an atmosphere.
- atmospheric aerosol formation
- envoAtmo
- atmospheric aerosol formation
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- An aerosol formation process which occurs in an atmosphere.
- https://en.wikipedia.org/wiki/Particulates
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- A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
- formation of solid particles in an atmosphere
- envoAtmo
- formation of a solid aerosol in an atmosphere
-
-
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- A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
- https://en.wikipedia.org/wiki/Particulates
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- A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
- formation of liquid droplets in an atmosphere
- formation of liquid particles in an atmosphere
- envoAtmo
- formation of a liquid aerosol in an atmosphere
+ particle formation
+ particulate matter formation process
-
+
- A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
+ A process during which microscopic solid or liquid objects are formed.
https://en.wikipedia.org/wiki/Particulates
@@ -8425,91 +5683,6 @@ https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of
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- A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
- atmospheric formation of a solid aerosol
- formation of a solid aerosol in an atmosphere
- formation of a solid aerosol in the atmosphere
- formation of solid particles from gaseous material in an atmosphere
- envoAtmo
- formation of a solid aerosol from gaseous material in an atmosphere
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- A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
- https://en.wikipedia.org/wiki/Particulates
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- A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
- atmospheric formation of a liquid aerosol
- formation of a liquid aerosol in an atmosphere
- formation of a liquid aerosol in the atmosphere
- formation of liquid droplets from gaseous material in an atmosphere
- formation of liquid particles from gaseous material in an atmosphere
- envoAtmo
- formation of a liquid aerosol from gaseous material in an atmosphere
-
-
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- A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
- https://en.wikipedia.org/wiki/Particulates
-
-
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@@ -8836,7 +6009,7 @@ https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of
Ice which is primarily composed of carbon dioxide.
- https://en.wikipedia.org/wiki/Ice
+ https://en.wikipedia.org/wiki/Ice
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- An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system.
- http://purl.jp/bio/11/meo/MEO_0000871
- envoMeo
- envoOmics
- environment associated with an aquatic invertebrate
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- http://purl.jp/bio/11/meo/MEO_0000871
- Not currently live, may need to be switched to alternative PURLs.
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- The surface layer of a mass of sediment.
- surface of a sedimentary mass
- surface sediment
- sediment surface
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- An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.
- terrestrial environmental zone
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- A terrestrial zone which is bounded by constructed, manufactured, or other anthropogenic material entities.
- anthropised terrestrial environmental zone
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- An environmental zone which is bounded by material parts of a marine environment.
- This class will eventually be populated by inference alone, with its subclasses distributed in more process-linked hierarchies to improve semantic density.
- marine environmental zone
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- An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
- NCIT:C44445
- solar radiation
- environmental_hazards
- envoAstro
- stellar radiation
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- An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
- https://en.wikipedia.org/wiki/Electromagnetic_radiation
- https://en.wikipedia.org/wiki/Solar_irradiance
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- solar radiation
- NCIT:C44445
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- A natural environment which is located on a land mass.
- terrestrial natural environment
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- A natural environment which is within a water body.
- aquatic natural environment
+ The surface layer of a mass of sediment.
+ surface of a sedimentary mass
+ surface sediment
+ sediment surface
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- An environmental zone which is part of an atmosphere.
- atmospheric area
- atmospheric zone
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- A geographic feature which is primarily composed of a continuous volume of liquid water held in shape or sustained by an environmental process.
- Should create links to envrionmental process with new relation like "sustained_by"
- Similar, in spirit, to landform.
- hydroform
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- Should create links to envrionmental process with new relation like "sustained_by"
- ORCID:0000-0002-4366-3088
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- A body of water which is primarily composed of saline water.
- saline body of water
- This class has its subclasses populated by inference.
- saline water body
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- A body of water which is primarily composed of freshwater, with low solute content.
- LTER:216
- fresh body of water
- freshwater body
- This class has its subclasses primarily populated by inference. The threshold for what constitutes "fresh" water is variable and should typically be deferred to an applicatoin layer resource.
- fresh water body
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- LTER:216
- https://vocab.lternet.edu/vocab/vocab/index.php?tema=216&/freshwater
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- A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
- advective transport
- Advective processes are disjoint from diffusive processes. Typically, fluids are advected.
- advective transport process
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- A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
- https://en.wikipedia.org/wiki/Advection
- https://en.wikipedia.org/wiki/Intensive_and_extensive_properties
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- An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
- erosion
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- An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
- https://en.wikipedia.org/wiki/Erosion
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- A landform which has been rendered barren or partially barren by environmental extremes, especially by low rainfall.
- desert
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- body of liquid
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- An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
-
- 2019-01-09T09:07:24Z
- anthropogenic radiation
- artificial radiation
- environmental_hazards
- envoAstro
- radiation from a manufactured product
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- An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
- https://en.wikipedia.org/wiki/Electromagnetic_radiation
- https://en.wikipedia.org/wiki/Solar_irradiance
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- A freezing process during which liquid water is transformed into water ice.
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- 2019-01-31T21:16:46Z
- freezing of water into water ice
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- A water surface that is part of a water body.
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- 2019-02-27T21:22:13Z
- surface layer of a water body
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- An ecoregion which is located on a landmass.
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- 2019-03-05T17:40:44Z
- https://www.worldwildlife.org/biome-categories/terrestrial-ecoregions
- terrestrial ecoregion
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- A surface layer which is part of an ocean or sea.
-
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+ A freezing process during which liquid water is transformed into water ice.
- 2019-03-06T01:22:01Z
- envoMarine
- envoPlastics
- At this level, the depth of this layer is ambiguous. Some methods (telemetry) measure only the first few centimeters of the sea or ocean surface. In situ methods often sample the first few meters. Subclasses can be created for such cases.
-Sea surface layer is also used to refer to the surfaces of oceans.
- sea surface layer
+ 2019-01-31T21:16:46Z
+ freezing of water into water ice
@@ -10578,50 +7127,6 @@ Some definitions include additional discussion of the the physics involved which
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- A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
-
- 2019-05-30T21:07:51Z
- atmospheric formation of a solid aerosol
- formation of a solid aerosol in an atmosphere
- formation of a solid aerosol in the atmosphere
- formation of solid particles from liquid material in an atmosphere
- envoAtmo
- formation of a solid aerosol from liquid material in an atmosphere
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- A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
- https://en.wikipedia.org/wiki/Particulates
-
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- A fluid interface which separates two fluid masses with differing properties.
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- 2019-07-22T17:43:32Z
- fluid front
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- A fluid interface which separates two fluid masses with differing properties.
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- A fluid front which is composed primarily of gaseous material and separates at least two gaseous masses.
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- 2019-07-22T17:50:08Z
- gaseous front
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- 2
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- A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
-
- 2019-07-22T17:57:21Z
- meteorological front
- envoAtmo
- This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: "Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms."
- weather front
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- A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
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- This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: "Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms."
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- A weather front which separates air masses of tropical and polar origin.
-
- 2019-08-20T13:46:42Z
- envoAtmo
- envoPolar
- polar front
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- A weather front which separates air masses of tropical and polar origin.
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- 2019-09-05T05:47:26Z
- mass fluid flow
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- An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a desert.
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- 2019-10-17T08:21:08Z
- desert ecosystem
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- A solid astronomical body part which is part of the landmass of that body.
-
- 2019-10-17T08:27:17Z
- part of a landmass
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- A large continuous area of land, either surrounded by sea or contiguous with another landmass.
-
- 2019-10-17T08:31:26Z
- landmass
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- A large continuous area of land, either surrounded by sea or contiguous with another landmass.
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@@ -11414,90 +7699,11 @@ Some definitions include additional discussion of the the physics involved which
land
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- A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
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- 2019-10-21T11:05:45Z
- aquatic ecosystem
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- 2019-10-21T11:06:11Z
- marine ecosystem
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- 2019-10-21T11:06:34Z
- freshwater ecosystem
-
+
+
+ A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
+
+
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- A biome which is subject to montane altitudinal conditions.
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- 2019-11-06T16:00:33Z
- montane biome
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- A biome which is subject to arid environmental conditions.
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- 2019-11-06T16:06:47Z
- arid biome
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- A process which occurs within an atmosphere.
- This class will be populated by inference and is primarily organisational.
- atmospheric process
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- An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
- envoPolar
- planetary erosion
-
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- An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
- https://en.wikipedia.org/wiki/Erosion
-
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- A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
- The general semantics of depression and geographic basin are still to be worked out see https://github.com/EnvironmentOntology/envo/issues/486
-
- http://orcid.org/0000-0002-3410-4655
- envoPolar
- geographic basin
-
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- A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
- https://en.wikipedia.org/wiki/Basin
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- Sediment which has been transported through the marine water column, settling on the seafloor.
-
- http://orcid.org/0000-0002-3410-4655
- marine sediments
- envoPolar
- Particles of marine sediment are primarily generated by 1) processes in terrestrial systems and transported to the marine realm by the action of rivers or aeolian processes (amongst other routes) , 2) marine organisms, 3) chemical processes in seawater, or 4) cosmogeneous input.
- marine sediment
-
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- Sediment which has been transported through the marine water column, settling on the seafloor.
- https://en.wikipedia.org/wiki/Pelagic_sediment#_note-8
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- A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface.
-
- http://orcid.org/0000-0002-3410-4655
- envoPolar
- sedimentation in a water body
-
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- The concentration of carbon dioxide when measured in seawater.
-
- 2019-03-14T21:35:30Z
- envoNceas
- concentration of carbon dioxide in seawater
-
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- A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
- relational shape quality
- shape
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- A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.
- elongated
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- A positional which is relatively low.
- low position
- decreased position
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- A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.
- sloped
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- A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.
- elevation
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- An elevation which is relatively low.
- low elevation
- decreased elevation
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- sloped downward
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group of organism
organism collection
May be of the same or different species.
- collection of organisms
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- This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed.
-
- A collection of organisms, all of the same species, that live in the same place.
- ISBN:0878932739
- It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population of organisms.
-
-Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used.
- population of organisms
+ collection of organisms
@@ -14152,18 +9988,6 @@ Classes for population already exist in IDO ('organism population', I
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- A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.
- collection of organisms of the same species
- single-species collection of organisms
-
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@@ -14372,8 +10196,8 @@ Classes for population already exist in IDO ('organism population', I
An anatomical entity that is or was part of a plant.
- BFO:0000004
- CARO:0000000
+ BFO:0000004
+ CARO:0000000
POC:curators
@@ -14394,7 +10218,7 @@ Classes for population already exist in IDO ('organism population', I
Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.
- CAROC:Brownsville2014
+ CAROC:Brownsville2014
@@ -14422,674 +10246,6 @@ Classes for population already exist in IDO ('organism population', I
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- 2019-03-05T17:25:21Z
- Western Australia Ecoregion
- WWF:AA1310
- https://www.worldwildlife.org/ecoregions/aa1310
- Western Australian Mulga Shrublands Ecoregion
-
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- 2019-03-05T17:51:32Z
- https://www.worldwildlife.org/biomes/deserts-and-xeric-shrublands
- Australasia Ecoregion
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-
-
-
-
- 2019-03-05T17:52:41Z
- Southern central Australia Ecoregion
- WWF:AA1309
- https://www.worldwildlife.org/ecoregions/aa1309
- Tirari-Sturt Stony Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T17:54:35Z
- Eastern central Australia Ecoregion
- WWF:AA1308
- https://www.worldwildlife.org/ecoregions/aa1308
- Simpson Desert Region
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T17:56:13Z
- Western Australia Ecoregion
- WWF:AA1307
- https://www.worldwildlife.org/ecoregions/aa1307
- Pilbara Shrublands Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T18:10:52Z
- Western coast of Australia Ecoregion
- WWF:AA1301
- https://www.worldwildlife.org/ecoregions/aa1301
- Carnarvon Xeric Shrublands Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T18:12:28Z
- Central Australia Ecoregion
- WWF:AA1302
- https://www.worldwildlife.org/ecoregions/aa1302
- Central Ranges Xeric Shrub Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T18:15:11Z
- Western central Australia
- WWF:AA1303
- https://www.worldwildlife.org/ecoregions/aa1303
- Gibson Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T18:17:15Z
- Northwestern Australia
- WWF:AA1304
- https://www.worldwildlife.org/ecoregions/aa1304
- The Great Sandy-Tanami Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T18:24:06Z
- Southern Australia Ecoregion
- WWF:AA1305
- https://www.worldwildlife.org/ecoregions/aa1305
- Great Victoria Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-05T18:26:16Z
- Southern Australia Ecoregion
- WWF:AA1306
- https://www.worldwildlife.org/ecoregions/aa1306
- Nullarbor Plains Xeric Shrubland Ecoregion
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:01:41Z
- https://www.worldwildlife.org/biomes/deserts-and-xeric-shrublands
- Afrotropical Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:02:37Z
- Southern Africa: Southern Namibia into South Africa
- WWF:AT1322
- https://www.worldwildlife.org/ecoregions/at1322
- Succulent Karoo Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:07:38Z
- WWF:AT1321
- https://www.worldwildlife.org/ecoregions/at1321
- Arabian Peninsula: Yemen and Saudi Arabia
- Yemen and Saudi Arabia Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:11:38Z
- WWF:AT1320
- https://www.worldwildlife.org/ecoregions/at1320
- Arabian Peninsula: Yemen, Saudi Arabia, and Oman
- Yemen, Saudi Arabia, and Oman Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:13:00Z
- WWF:AT1319
- https://www.worldwildlife.org/ecoregions/at1319
- Somali montane xeric woodlands ecoregion
- Somali Montane Xeric Woodland Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:15:07Z
- Islands east of the Horn of Africa and south of Yemen Ecoregion
- WWF:AT1318
- https://www.worldwildlife.org/ecoregions/at1318
- Socotran Archipelago Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:18:55Z
- WWF:AT1317
- https://www.worldwildlife.org/ecoregions/at1317
- Red Sea Coastal Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:20:56Z
- WWF:AT1316
- https://www.worldwildlife.org/ecoregions/at1316
- Namibian Savanna Woodland Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:24:28Z
- Africa: Namibia Ecoregion
- WWF:AT1315
- https://www.worldwildlife.org/ecoregions/at1315
- Namib Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:26:15Z
- WWF:AT1314
- https://www.worldwildlife.org/ecoregions/at1314
- Nama Karoo Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:28:43Z
- WWF:AT1313
- https://www.worldwildlife.org/ecoregions/at1313
- Masai Xeric Grasslands and Shrublands Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:30:23Z
- WWF:AT1312
- https://www.worldwildlife.org/ecoregions/at1312
- Madagascar Succulent Woodlands Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:31:29Z
- WWF:AT1311
- https://www.worldwildlife.org/ecoregions/at1311
- Madagascar spiny desert ecoregion
- Madagascar Spiny Thickets Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:39:32Z
- WWF:AT1310
- https://www.worldwildlife.org/ecoregions/at1310
- Africa: Coastal Namibia and Angola Ecoregion
- Kaokoveld Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:42:47Z
- WWF:AT1309
- https://www.worldwildlife.org/ecoregions/at1309
- Kalahari Xeric Savanna Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:44:54Z
- WWF:AT1308
- https://www.worldwildlife.org/ecoregions/at1308
- Southern Africa: Islands about half-way between southern Madagascar and southern Mozambique Ecoregion
- Ile Europa and Bassas da India Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:46:58Z
- Eastern Africa: Somalia
- WWF:AT1307
- https://www.worldwildlife.org/ecoregions/at1307
- Hobyo Grassland and Shrubland Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-06T22:54:57Z
- WWF:AT1306
- https://www.worldwildlife.org/ecoregions/at1306
- Arabian Peninsula: Oman and United Arab Emirates Ecoregion
- Oman and United Arab Emirates Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-07T00:08:06Z
- WWF:AT1305
- https://www.worldwildlife.org/ecoregions/at1305
- Ethiopian Xeric Grasslands and Shrublands Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-07T00:11:29Z
- WWF:AT1304
- https://www.worldwildlife.org/ecoregions/at1304
- Eritrean Coastal Desert Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-07T00:13:33Z
- WWF:AT1303
- https://www.worldwildlife.org/ecoregions/at1303
- North central Africa: Eastern Chad and small area of western Sudan
- East Saharan Montane Xeric Woodland Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-07T00:16:12Z
- WWF:AT1302
- https://www.worldwildlife.org/ecoregions/at1302
- Western Asia: Oman, Yemen, and Saudi Arabia Ecoregion
- Oman, Yemen, and Saudi Arabia Ecoregion
-
-
-
-
-
-
-
-
-
-
- 2019-03-07T00:18:09Z
- WWF:AT1301
- https://www.worldwildlife.org/ecoregions/at1301
- Aldabra Island Xeric Scrub Ecoregion
-
-
-
-
-
-
-
-
-
- 2019-04-26T23:38:50Z
-
- Indo-Malay Ecoregion
-
-
-
-
-
-
-
-
-
-
-
- 2019-04-26T23:40:13Z
-
- WWF:IM1304
- Southern Asia: Western India into Pakistan
- Thar Desert
-
-
-
-
-
-
-
-
-
-
- 2019-04-27T00:12:51Z
-
- WWF:IM1303
- Southern Asia: Eastern India and western Pakistan
- Northwestern Thorn Scrub Forests
-
-
-
-
-
-
-
-
- A polar front between the deep, cold Arctic air and the shallower, warmer polar air of northern latitudes on Earth.
-
- 2019-08-20T13:47:18Z
- envoAtmo
- envoPolar
- Arctic front
-
-
-
-
- A polar front between the deep, cold Arctic air and the shallower, warmer polar air of northern latitudes on Earth.
-
-
-
-
-
-
-
-
-
- A polar front between the deep, cold Antarctic air and the shallower, warmer polar air of southern latitudes on Earth.
-
- 2019-08-20T13:48:44Z
- envoAtmo
- envoPolar
- Antarctic front
-
-
-
-
- A polar front between the deep, cold Antarctic air and the shallower, warmer polar air of southern latitudes on Earth.
-
-
-
-
-
-
-
-
-
-
- Stellar radiation emitted from Sol.
-
- 2020-05-19T22:27:44Z
- Solar radiation
-
-
-
-
-
-
-
-
- third planet from the Sun in the Solar System
- Earth
-
-
-
-
- third planet from the Sun in the Solar System
- https://www.wikidata.org/wiki/Q2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- "Suni, or Jalca, is one of the eight Natural Regions of Peru. It is located in the Andes at an altitude between 3,500 and 4,000 metres above sea level. Suni has a dry and cold weather and there are many glacial valleys. The flora includes gramineous plants and shrubs such as the taya-taya (Caesalpinia spinosa), the quishuar (Buddleja coriacea), and the cantuta (Cantua buxifolia) which was considered sacred by the Incas. Even though it is hard for plants to grow because of the weather, people are able to cultivate such crops as quinoa, qañiwa, broad beans and ulluku (Ullucus tuberosus). The main fauna is the guinea pig and, among numerous other highland birds, the Chiguanco thrush."
- Jalca
- Suni
-
-
-
-
- "Suni, or Jalca, is one of the eight Natural Regions of Peru. It is located in the Andes at an altitude between 3,500 and 4,000 metres above sea level. Suni has a dry and cold weather and there are many glacial valleys. The flora includes gramineous plants and shrubs such as the taya-taya (Caesalpinia spinosa), the quishuar (Buddleja coriacea), and the cantuta (Cantua buxifolia) which was considered sacred by the Incas. Even though it is hard for plants to grow because of the weather, people are able to cultivate such crops as quinoa, qañiwa, broad beans and ulluku (Ullucus tuberosus). The main fauna is the guinea pig and, among numerous other highland birds, the Chiguanco thrush."
- https://en.wikipedia.org/wiki/Suni_(geography)
-
-
-
-
-
-
-
-
- Sun
- Sol
-
-
-
-
-
-
-
-
-
- Earth's interconnected water system
- World Ocean
-
-
-
-
- Earth's interconnected water system
- https://www.wikidata.org/wiki/Q715269
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
diff --git a/src/ontology/imports/iao_import.owl b/src/ontology/imports/iao_import.owl
index 7fb2bcb..36cac8d 100644
--- a/src/ontology/imports/iao_import.owl
+++ b/src/ontology/imports/iao_import.owl
@@ -7,12 +7,11 @@
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:terms="http://purl.org/dc/terms/">
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
- 2021-12-12
+ 2022-01-01
@@ -112,24 +111,6 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
example to be eventually removed
example to be eventually removed
@@ -496,7 +476,6 @@ Previous. An information content entity is a non-realizable information entity t
-
failed exploratory term
The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
Person:Alan Ruttenberg
@@ -508,7 +487,6 @@ Previous. An information content entity is a non-realizable information entity t
-
metadata complete
Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
metadata complete
@@ -519,7 +497,6 @@ Previous. An information content entity is a non-realizable information entity t
-
organizational term
Term created to ease viewing/sort terms for development purpose, and will not be included in a release
organizational term
@@ -530,7 +507,6 @@ Previous. An information content entity is a non-realizable information entity t
-
ready for release
Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
ready for release
@@ -541,7 +517,6 @@ Previous. An information content entity is a non-realizable information entity t
-
metadata incomplete
Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
metadata incomplete
@@ -552,7 +527,6 @@ Previous. An information content entity is a non-realizable information entity t
-
uncurated
Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
uncurated
@@ -563,7 +537,6 @@ Previous. An information content entity is a non-realizable information entity t
-
pending final vetting
All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
pending final vetting
@@ -574,7 +547,6 @@ Previous. An information content entity is a non-realizable information entity t
-
placeholder removed
placeholder removed
@@ -584,7 +556,6 @@ Previous. An information content entity is a non-realizable information entity t
-
terms merged
An editor note should explain what were the merged terms and the reason for the merge.
terms merged
@@ -595,7 +566,6 @@ Previous. An information content entity is a non-realizable information entity t
-
term imported
This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.
term imported
@@ -606,7 +576,6 @@ Previous. An information content entity is a non-realizable information entity t
-
term split
This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.
term split
@@ -617,7 +586,6 @@ Previous. An information content entity is a non-realizable information entity t
-
universal
Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
Alan Ruttenberg
@@ -630,7 +598,6 @@ Previous. An information content entity is a non-realizable information entity t
-
defined class
A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
"definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
@@ -643,7 +610,6 @@ Previous. An information content entity is a non-realizable information entity t
-
named class expression
A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
@@ -656,7 +622,6 @@ Previous. An information content entity is a non-realizable information entity t
-
to be replaced with external ontology term
Terms with this status should eventually replaced with a term from another ontology.
Alan Ruttenberg
@@ -669,46 +634,12 @@ Previous. An information content entity is a non-realizable information entity t
-
requires discussion
A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
Alan Ruttenberg
group:OBI
requires discussion
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
diff --git a/src/ontology/imports/omrse_import.owl b/src/ontology/imports/omrse_import.owl
index d92deaf..aa2ff02 100644
--- a/src/ontology/imports/omrse_import.owl
+++ b/src/ontology/imports/omrse_import.owl
@@ -16,9 +16,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
+
- 2021-12-12
+ 2022-01-01
@@ -238,36 +238,18 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
@@ -2647,7 +2629,6 @@ Previous. An information content entity is a non-realizable information entity t
-
example to be eventually removed
example to be eventually removed
@@ -2657,7 +2638,6 @@ Previous. An information content entity is a non-realizable information entity t
-
failed exploratory term
The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
Person:Alan Ruttenberg
@@ -2669,7 +2649,6 @@ Previous. An information content entity is a non-realizable information entity t
-
metadata complete
Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
metadata complete
@@ -2680,7 +2659,6 @@ Previous. An information content entity is a non-realizable information entity t
-
organizational term
Term created to ease viewing/sort terms for development purpose, and will not be included in a release
organizational term
@@ -2691,7 +2669,6 @@ Previous. An information content entity is a non-realizable information entity t
-
ready for release
Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
ready for release
@@ -2702,7 +2679,6 @@ Previous. An information content entity is a non-realizable information entity t
-
metadata incomplete
Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
metadata incomplete
@@ -2713,7 +2689,6 @@ Previous. An information content entity is a non-realizable information entity t
-
uncurated
Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
uncurated
@@ -2724,7 +2699,6 @@ Previous. An information content entity is a non-realizable information entity t
-
pending final vetting
All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
pending final vetting
@@ -2735,7 +2709,6 @@ Previous. An information content entity is a non-realizable information entity t
-
placeholder removed
placeholder removed
@@ -2745,7 +2718,6 @@ Previous. An information content entity is a non-realizable information entity t
-
terms merged
An editor note should explain what were the merged terms and the reason for the merge.
terms merged
@@ -2756,7 +2728,6 @@ Previous. An information content entity is a non-realizable information entity t
-
term imported
This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.
term imported
@@ -2767,7 +2738,6 @@ Previous. An information content entity is a non-realizable information entity t
-
term split
This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.
term split
@@ -2778,7 +2748,6 @@ Previous. An information content entity is a non-realizable information entity t
-
universal
Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
Alan Ruttenberg
@@ -2791,7 +2760,6 @@ Previous. An information content entity is a non-realizable information entity t
-
defined class
A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
"definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
@@ -2804,7 +2772,6 @@ Previous. An information content entity is a non-realizable information entity t
-
named class expression
A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
@@ -2817,7 +2784,6 @@ Previous. An information content entity is a non-realizable information entity t
-
to be replaced with external ontology term
Terms with this status should eventually replaced with a term from another ontology.
Alan Ruttenberg
@@ -2830,7 +2796,6 @@ Previous. An information content entity is a non-realizable information entity t
-
requires discussion
A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
Alan Ruttenberg
@@ -2881,28 +2846,6 @@ Previous. An information content entity is a non-realizable information entity t
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl
index 9d11508..ca77416 100644
--- a/src/ontology/imports/pato_import.owl
+++ b/src/ontology/imports/pato_import.owl
@@ -8,7 +8,6 @@
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
xmlns:pato="http://purl.obolibrary.org/obo/pato#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
@@ -22,9 +21,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
+
- 2021-12-26
+ 2022-01-01
@@ -60,9 +59,7 @@
-
- definition
-
+
@@ -152,12 +149,6 @@
-
-
-
-
-
-
@@ -392,14 +383,6 @@
-
-
-
-
-
-
-
-
@@ -456,14 +439,6 @@
-
-
-
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- quality
- PATO:0000068
- TODO: define this or obsolete it and move children somewhere else.
- qualitative
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- A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
- quality
- PATO:0000069
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- deviation (from_normal)
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- A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
- PATOC:GVG
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- A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
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- quality
- aberrant
- atypia
- atypical
- defective
- PATO:0000460
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- abnormal
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- A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
- PATOC:GVG
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- Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
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- AAO:0010841
- AEO:0000000
- BILA:0000000
- BIRNLEX:6
- CARO:0000000
- EHDAA2:0002229
- FBbt:10000000
- FMA:62955
- HAO:0000000
- MA:0000001
- NCIT:C12219
- TAO:0100000
- TGMA:0001822
- UMLS:C1515976
- WBbt:0000100
- XAO:0000000
- ZFA:0100000
- uberon
- UBERON:0001062
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- anatomical entity
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- Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
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- FMA:62955
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- UMLS:C1515976
- ncithesaurus:Anatomic_Structure_System_or_Substance
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- definition
- definition
- textual definition
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- The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- 2012-04-05:
-Barry Smith
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-The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
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-Can you fix to something like:
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-A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
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-Alan Ruttenberg
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-Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
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-On the specifics of the proposed definition:
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-We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
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-Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
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-We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
- PERSON:Daniel Schober
- GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
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- definition
- definition
- textual definition
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- has_exact_synonym
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- label
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- is part of
- my brain is part of my body (continuant parthood, two material entities)
- my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
- this day is part of this year (occurrent parthood)
- a core relation that holds between a part and its whole
- Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
- Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
- Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
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-A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
- part_of
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- part of
- http://www.obofoundry.org/ro/#OBO_REL:part_of
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- has part
- my body has part my brain (continuant parthood, two material entities)
- my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
- this year has part this day (occurrent parthood)
- a core relation that holds between a whole and its part
- Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
- Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
- Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
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-A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
- has_part
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- has part
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- preceded by
- x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
- An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
- is preceded by
- preceded_by
- http://www.obofoundry.org/ro/#OBO_REL:preceded_by
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- preceded by
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- precedes
- x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
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- precedes
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- participates in
- this blood clot participates in this blood coagulation
- this input material (or this output material) participates in this process
- this investigator participates in this investigation
- a relation between a continuant and a process, in which the continuant is somehow involved in the process
- participates_in
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- participates in
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- has participant
- this blood coagulation has participant this blood clot
- this investigation has participant this investigator
- this process has participant this input material (or this output material)
- a relation between a process and a continuant, in which the continuant is somehow involved in the process
- Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
- has_participant
- http://www.obofoundry.org/ro/#OBO_REL:has_participant
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- has participant
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- dos
- 2017-09-17T13:52:24Z
- Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
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- directly regulated by
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- Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
- GOC:dos
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- David Osumi-Sutherland
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- X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
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- ends after
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- David Osumi-Sutherland
- starts_at_end_of
- X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
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- immediately preceded by
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- David Osumi-Sutherland
- ends_at_start_of
- meets
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- X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
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- immediately precedes
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- x overlaps y if and only if there exists some z such that x has part z and z part of y
- http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
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- overlaps
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- process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
- We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit
- Chris Mungall
- David Hill
- Tanya Berardini
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- GO
- Regulation precludes parthood; the regulatory process may not be within the regulated process.
- regulates (processual)
- false
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- regulates
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- Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
- Chris Mungall
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- negatively regulates (process to process)
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- negatively regulates
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- Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
- Chris Mungall
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- positively regulates (process to process)
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- positively regulates
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- mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
- osteoclast SubClassOf 'capable of' some 'bone resorption'
- A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
- Chris Mungall
- has function realized in
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- For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
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- capable of
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- c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
- Chris Mungall
- has function in
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- capable of part of
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- Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
- https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1
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- A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
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- temporally related to
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- p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
- Chris Mungall
- consumes
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- has input
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- A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
- c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
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- acts upstream of
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- A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
- c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
- affects
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- acts upstream of or within
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- cjm
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- holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
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- causally upstream of, positive effect
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- holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y
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- causally upstream of, negative effect
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- A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
- Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
- Chris Mungall
- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
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- ecologically related to
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- A mereological relationship or a topological relationship
- Chris Mungall
- Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
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- mereotopologically related to
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- a particular instances of akt-2 enables some instance of protein kinase activity
- Chris Mungall
- catalyzes
- executes
- has
- is catalyzing
- is executing
- This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
- This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.
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- enables
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- A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
- Chris Mungall
- This is a grouping relation that collects relations used for the purpose of connecting structure and function
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- functionally related to
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- inverse of enables
- Chris Mungall
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- enabled by
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- inverse of regulates
- Chris Mungall
- regulated by (processual)
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- regulated by
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- inverse of negatively regulates
- Chris Mungall
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- Chris Mungall
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- positively regulated by
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- An organism that is a member of a population of organisms
- is member of is a mereological relation between a item and a collection.
- is member of
- member part of
- SIO
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- member of
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- has member is a mereological relation between a collection and an item.
- SIO
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- has member
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- inverse of has input
- Chris Mungall
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- input of
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- inverse of upstream of
- Chris Mungall
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- causally downstream of
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- Chris Mungall
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- immediately causally downstream of
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- This relation groups causal relations between material entities and causal relations between processes
- This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
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-To define causal relations in an activity-flow type network, we make use of 3 primitives:
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- * Temporal: how do the intervals of the two occurrents relate?
- * Is the causal relation regulatory?
- * Is the influence positive or negative
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-The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.
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-For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.
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-For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.
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-Each of these 3 primitives can be composed to yield a cross-product of different relation types.
- Chris Mungall
- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
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- causally related to
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- p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
- Chris Mungall
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- causally upstream of
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- p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
- Chris Mungall
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- immediately causally upstream of
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- p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
- We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
- Chris Mungall
- influences (processual)
- affects
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- causally upstream of or within
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- inverse of causally upstream of or within
- Chris Mungall
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- causally downstream of or within
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- c involved in regulation of p if c is involved in some p' and p' regulates some p
- Chris Mungall
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- involved in regulation of
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- c involved in regulation of p if c is involved in some p' and p' positively regulates some p
- Chris Mungall
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- involved in positive regulation of
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- c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
- Chris Mungall
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- involved in negative regulation of
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- c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
- OWL does not allow defining object properties via a Union
- Chris Mungall
- involved in or reguates
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- involved in or involved in regulation of
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- A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
- Considering relabeling as 'pairwise interacts with'
- This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
- Chris Mungall
- Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
- in pairwise interaction with
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- interacts with
- http://purl.obolibrary.org/obo/MI_0914
- https://github.com/oborel/obo-relations/wiki/InteractionRelations
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- An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
- Chris Mungall
- binds
- molecularly binds with
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- molecularly interacts with
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- http://purl.obolibrary.org/obo/MI_0915
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- Axiomatization to GO to be added later
- Chris Mungall
- An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.
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- phosphorylates
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- The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
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-A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
- Chris Mungall
- Vasundra Touré
- molecularly controls
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- directly regulates activity of
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- Chris Mungall
- This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.
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- helper property (not for use in curation)
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- Chris Mungall
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- is kinase activity
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- A relationship between a material entity and a process where the material entity has some causal role that influences the process
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- causal agent in process
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- p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
- Chris Mungall
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- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
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- causal relation between processes
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- The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
- Chris Mungall
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- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
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- causal relation between entities
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- Chris Mungall
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- causally influenced by (entity-centric)
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- causally influenced by
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- Chris Mungall
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- interaction relation helper property
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- https://github.com/oborel/obo-relations/wiki/InteractionRelations
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- Chris Mungall
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- molecular interaction relation helper property
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- The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
- Chris Mungall
- Vasundra Touré
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- causally influences (entity-centric)
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- causally influences
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- Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
- Chris Mungall
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- directly regulates (processual)
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- directly regulates
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- A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
- Chris Mungall
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- causal relation between material entity and a process
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- pyrethroid -> growth
- Holds between c and p if and only if c is capable of some activity a, and a regulates p.
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- capable of regulating
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- Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
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- capable of negatively regulating
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- renin -> arteriolar smooth muscle contraction
- Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
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- capable of positively regulating
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- Inverse of 'causal agent in process'
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- process has causal agent
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- cjm
- 2018-01-26T23:49:30Z
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- acts upstream of or within, positive effect
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- cjm
- 2018-01-26T23:49:51Z
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- acts upstream of or within, negative effect
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- c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
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- cjm
- 2018-01-26T23:53:14Z
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- acts upstream of, positive effect
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- c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
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- cjm
- 2018-01-26T23:53:22Z
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- acts upstream of, negative effect
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- cjm
- 2018-03-13T23:55:05Z
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- causally upstream of or within, negative effect
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- cjm
- 2018-03-13T23:55:19Z
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- causally upstream of or within, positive effect
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- The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
- Vasundra Touré
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- regulates activity of
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- entity
- Entity
- Julius Caesar
- Verdi’s Requiem
- the Second World War
- your body mass index
- BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
- Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
- An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
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- entity
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- Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
-
- per discussion with Barry Smith
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- An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
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- continuant
- Continuant
- An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
- BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
- Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
- A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
- if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
- if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
- if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
- (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
- (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
- (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
- (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
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- continuant
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- Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
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- A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
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- if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
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- if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
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- if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
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- (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
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- (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
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- (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
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- (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
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- occurrent
- Occurrent
- An entity that has temporal parts and that happens, unfolds or develops through time.
- BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
- BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
- Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
- Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
- An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
- Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
- b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
- (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
- (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
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- occurrent
-
-
-
-
- Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
-
- per discussion with Barry Smith
-
-
-
-
- Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
-
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- An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
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- Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
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- b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
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- (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
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- (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
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- ic
- IndependentContinuant
- a chair
- a heart
- a leg
- a molecule
- a spatial region
- an atom
- an orchestra.
- an organism
- the bottom right portion of a human torso
- the interior of your mouth
- A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
- b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
- For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
- For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
- (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
- (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
- (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
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- independent continuant
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- b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
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- For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
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- For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
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- (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
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- (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
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-
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- (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
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- process
- Process
- a process of cell-division, \ a beating of the heart
- a process of meiosis
- a process of sleeping
- the course of a disease
- the flight of a bird
- the life of an organism
- your process of aging.
- An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
- p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
- BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
- (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
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- process
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-
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- p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
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- (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
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- sdc
- SpecificallyDependentContinuant
- Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
- of one-sided specifically dependent continuants: the mass of this tomato
- of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
- the disposition of this fish to decay
- the function of this heart: to pump blood
- the mutual dependence of proton donors and acceptors in chemical reactions [79
- the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
- the pink color of a medium rare piece of grilled filet mignon at its center
- the role of being a doctor
- the shape of this hole.
- the smell of this portion of mozzarella
- A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
- b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
- Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
- (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
-
- specifically dependent continuant
-
-
-
-
- b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
-
-
-
-
-
- Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
-
- per discussion with Barry Smith
-
-
-
-
- (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
-
-
-
-
-
-
-
-
-
- object-aggregate
- ObjectAggregate
- a collection of cells in a blood biobank.
- a swarm of bees is an aggregate of members who are linked together through natural bonds
- a symphony orchestra
- an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
- defined by fiat: the aggregate of members of an organization
- defined through physical attachment: the aggregate of atoms in a lump of granite
- defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
- defined via attributive delimitations such as: the patients in this hospital
- the aggregate of bearings in a constant velocity axle joint
- the aggregate of blood cells in your body
- the nitrogen atoms in the atmosphere
- the restaurants in Palo Alto
- your collection of Meissen ceramic plates.
- An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
- BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
- ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
- b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
- (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
-
- object aggregate
-
-
-
-
- An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
-
-
-
-
-
- An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
-
-
-
-
-
- ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
-
-
-
-
-
- b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
-
-
-
-
-
- (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
-
-
-
-
-
-
-
-
-
- gdc
- GenericallyDependentContinuant
- The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
- the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
- the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
- A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
- b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
- (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
-
- generically dependent continuant
-
-
-
-
- b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
-
-
-
-
-
- (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
-
-
-
-
-
-
-
-
-
- material
- MaterialEntity
- a flame
- a forest fire
- a human being
- a hurricane
- a photon
- a puff of smoke
- a sea wave
- a tornado
- an aggregate of human beings.
- an energy wave
- an epidemic
- the undetached arm of a human being
- An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
- BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
- BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
- BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
- A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
- Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
- every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
- (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
- (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
- (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
-
- material entity
-
-
-
-
- A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
-
-
-
-
-
- Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
-
-
-
-
-
- every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
-
-
-
-
-
- (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
-
-
-
-
-
- (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
-
-
-
-
-
- (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
-
-
-
-
-
-
-
-
-
- Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
- organism or virus
- Melissa Haendel
- 9/18/11
- organism or virus or viroid
-
-
-
-
-
-
-
-
- A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
- See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work.
- Subclasses will be added by inference.
- human dwelling
-
-
-
-
- A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
- https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015
-
-
-
-
-
-
-
-
- molecular process
-
- molecular_function
-
-
-
-
-
-
-
-
-
- catalytic activity
-
-
-
-
-
-
-
-
-
-
-
- true
-
-
-
- kinase activity
-
-
-
-
-
-
-
-
-
- transferase activity
-
-
-
-
-
-
-
-
-
- transferase activity, transferring phosphorus-containing groups
-
-
-
-
-
-
-
-
- data item
- Data items include counts of things, analyte concentrations, and statistical summaries.
-
- a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
- 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
- 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
- 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
- 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
- JAR: datum -- well, this will be very tricky to define, but maybe some
-information-like stuff that might be put into a computer and that is
-meant, by someone, to denote and/or to be interpreted by some
-process... I would include lists, tables, sentences... I think I might
-defer to Barry, or to Brian Cantwell Smith
-
-JAR: A data item is an approximately justified approximately true approximate belief
- PERSON: Alan Ruttenberg
- PERSON: Chris Stoeckert
- PERSON: Jonathan Rees
- data
-
- data item
-
-
-
-
-
-
-
-
- information content entity
- information content entity
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- curation status specification
-
- The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
- Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
- PERSON:Bill Bug
- GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
- OBI_0000266
- curation status specification
-
-
-
-
-
-
-
-
- data about an ontology part
- Data about an ontology part is a data item about a part of an ontology, for example a term
- Person:Alan Ruttenberg
- data about an ontology part
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- obsolescence reason specification
-
- The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
- The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
- PERSON: Alan Ruttenberg
- PERSON: Melanie Courtot
- obsolescence reason specification
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- denotator type
- The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
- A denotator type indicates how a term should be interpreted from an ontological perspective.
- Alan Ruttenberg
- Barry Smith, Werner Ceusters
- denotator type
-
-
-
-
-
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Teleostomi
-
-
-
-
-
-
-
-
- NCBITaxon:40673
- GC_ID:1
- bony vertebrates
- ncbi_taxonomy
-
- Euteleostomi
-
-
-
-
- bony vertebrates
-
-
-
-
-
-
-
-
- GC_ID:1
- ncbi_taxonomy
- biota
-
- cellular organisms
-
-
-
-
- biota
-
-
-
-
-
-
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Dipnotetrapodomorpha
-
-
-
-
-
-
-
-
- GC_ID:1
- PMID:11743200
- PMID:11791233
- ncbi_taxonomy
- Boreotheria
-
- Boreoeutheria
-
-
-
-
- Boreotheria
-
-
-
-
-
-
-
-
-
-
- GC_ID:1
- ncbi_taxonomy
- Homo/Pan/Gorilla group
-
- Homininae
-
-
-
-
- Homo/Pan/Gorilla group
-
-
-
-
-
-
-
-
-
-
- GC_ID:1
- PMID:23020233
- PMID:30257078
- eucaryotes
- eukaryotes
- ncbi_taxonomy
- Eucarya
- Eucaryotae
- Eukarya
- Eukaryotae
- eukaryotes
-
- Eukaryota
-
-
-
-
- eucaryotes
-
-
-
-
-
- eukaryotes
-
-
-
-
-
- Eucarya
-
-
-
-
-
- Eucaryotae
-
-
-
-
-
- Eukarya
-
-
-
-
-
- Eukaryotae
-
-
-
-
-
- eukaryotes
-
-
-
-
-
-
-
-
-
-
- GC_ID:1
- PMID:11214319
- PMID:12082125
- PMID:12878460
- PMID:15522813
- ncbi_taxonomy
-
- Euarchontoglires
-
-
-
-
-
-
-
-
-
- GC_ID:1
- ncbi_taxonomy
- Anthropoidea
-
- Simiiformes
-
-
-
-
- Anthropoidea
-
-
-
-
-
-
-
-
-
-
- GC_ID:1
- ape
- apes
- ncbi_taxonomy
-
- Hominoidea
-
-
-
-
- ape
-
-
-
-
-
- apes
-
-
-
-
-
-
-
-
-
- GC_ID:1
- tetrapods
- ncbi_taxonomy
-
- Tetrapoda
-
-
-
-
- tetrapods
-
-
-
-
-
-
-
-
-
- GC_ID:1
- amniotes
- ncbi_taxonomy
-
- Amniota
-
-
-
-
- amniotes
-
-
-
-
-
-
+
-
-
- GC_ID:1
- Theria
- ncbi_taxonomy
-
- Theria <mammals>
-
-
-
-
- Theria
-
-
+
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
- Fungi/Metazoa group
- opisthokonts
-
- Opisthokonta
-
-
-
-
- Fungi/Metazoa group
-
-
-
-
-
- opisthokonts
-
-
+
-
+
-
-
-
- GC_ID:1
- metazoans
- multicellular animals
- ncbi_taxonomy
- Animalia
- animals
-
- Metazoa
-
-
-
-
- metazoans
-
-
-
-
-
- multicellular animals
-
-
-
-
-
- Animalia
-
-
-
-
-
- animals
-
-
+
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Bilateria
-
+
-
+
-
-
- GC_ID:1
- deuterostomes
- ncbi_taxonomy
-
- Deuterostomia
-
-
-
-
- deuterostomes
-
-
+
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Haplorrhini
-
+
-
+
-
-
-
- GC_ID:1
- mammals
- ncbi_taxonomy
- mammals
-
- Mammalia
-
-
-
-
- mammals
-
-
-
-
-
- mammals
-
-
+
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Eumetazoa
-
+
-
+
-
-
-
- GC_ID:1
- chordates
- ncbi_taxonomy
- chordates
-
- Chordata
-
-
-
-
- chordates
-
-
-
-
-
- chordates
-
-
+
-
+
-
-
- GC_ID:1
- Vertebrata
- vertebrates
- ncbi_taxonomy
- vertebrates
-
- Vertebrata <vertebrates>
-
-
-
-
- Vertebrata
-
-
-
-
-
- vertebrates
-
-
-
-
-
- vertebrates
-
-
+
-
+
-
-
- GC_ID:1
- Gnathostomata
- jawed vertebrates
- ncbi_taxonomy
-
- Gnathostomata <vertebrates>
-
-
-
-
- Gnathostomata
-
-
-
-
-
- jawed vertebrates
-
-
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Sarcopterygii
-
+
-
+
-
-
-
- GC_ID:1
- Craniata
- ncbi_taxonomy
-
- Craniata <chordates>
-
-
-
-
- Craniata
-
-
+
-
+
-
-
- GC_ID:1
- eutherian mammals
- placental mammals
- placentals
- ncbi_taxonomy
- Placentalia
- placentals
-
- Eutheria
-
-
-
-
- eutherian mammals
-
-
-
-
-
- placental mammals
-
-
-
-
-
- placentals
-
-
-
-
-
- Placentalia
-
-
-
-
-
- placentals
-
-
-
+
-
-
-
- GC_ID:1
- primate
- ncbi_taxonomy
- Primata
- primates
-
- Primates
-
-
-
-
- primate
-
-
-
-
-
- Primata
-
-
-
-
-
- primates
-
-
+
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Catarrhini
-
+
-
+
-
-
-
- GC_ID:1
- great apes
- ncbi_taxonomy
- Pongidae
-
- Hominidae
+
+
+ Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
+ organism or virus
+ Melissa Haendel
+ 9/18/11
+ organism or virus or viroid
-
-
-
- great apes
-
-
-
-
-
- Pongidae
-
-
-
+
-
-
-
- GC_ID:1
- humans
- ncbi_taxonomy
-
- Homo
-
-
-
-
- humans
-
-
+
-
-
-
- GC_ID:1
- human
- man
- ncbi_taxonomy
-
- Homo sapiens
-
-
-
-
- human
-
-
-
-
-
- man
-
-
-
-
-
-
-
-
-
- A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
- quality (PATO)
- PATO:0000072
- quality
- PATO:0000001
-
- quality
-
-
-
-
- A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
- PATOC:GVG
-
+
@@ -3128,14 +177,6 @@ JAR: A data item is an approximately justified approximately true approximate be
-
-
-
-
-
-
-
-
@@ -3249,12 +290,6 @@ Classes for population already exist in IDO ('organism population', I
-
-
-
-
-
-
A collection of organisms of the same species that has as members only humans.
human community
@@ -3318,672 +353,9 @@ Classes for population already exist in IDO ('organism population', I
-
A collection of organisms that consists of exactly two organism, viruses, or viroids that are interacting with each other.
pair of interacting organisms
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- example to be eventually removed
- example to be eventually removed
-
-
-
-
-
-
-
-
- failed exploratory term
- The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
- Person:Alan Ruttenberg
- failed exploratory term
-
-
-
-
-
-
-
-
- metadata complete
- Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
- metadata complete
-
-
-
-
-
-
-
-
- organizational term
- Term created to ease viewing/sort terms for development purpose, and will not be included in a release
- organizational term
-
-
-
-
-
-
-
-
- ready for release
- Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
- ready for release
-
-
-
-
-
-
-
-
- metadata incomplete
- Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
- metadata incomplete
-
-
-
-
-
-
-
-
- uncurated
- Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
- uncurated
-
-
-
-
-
-
-
-
- pending final vetting
- All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
- pending final vetting
-
-
-
-
-
-
-
-
- placeholder removed
- placeholder removed
-
-
-
-
-
-
-
-
- terms merged
- An editor note should explain what were the merged terms and the reason for the merge.
- terms merged
-
-
-
-
-
-
-
-
- term imported
- This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.
- term imported
-
-
-
-
-
-
-
-
- term split
- This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.
- term split
-
-
-
-
-
-
-
-
- universal
- Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
- Alan Ruttenberg
- A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf
- universal
-
-
-
-
-
-
-
-
- defined class
- A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
- "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
- Alan Ruttenberg
- defined class
-
-
-
-
-
-
-
-
- named class expression
- A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
- named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
- Alan Ruttenberg
- named class expression
-
-
-
-
-
-
-
-
- to be replaced with external ontology term
- Terms with this status should eventually replaced with a term from another ontology.
- Alan Ruttenberg
- group:OBI
- to be replaced with external ontology term
-
-
-
-
-
-
-
-
- requires discussion
- A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
- Alan Ruttenberg
- group:OBI
- requires discussion
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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-
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-
-
-
-
- true
- MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z
- infer input from direct reg
-
-
-
-
-
-
-
-
-
-
-
-
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-
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-
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-
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-
-
-
-
-
- 'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
-
-
-
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-
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-
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-
-
-
- 'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
-
-
-
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diff --git a/src/ontology/imports/po_import.owl b/src/ontology/imports/po_import.owl
index 8562209..3173e6d 100644
--- a/src/ontology/imports/po_import.owl
+++ b/src/ontology/imports/po_import.owl
@@ -14,9 +14,9 @@
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
+
- 2021-12-26
+ 2022-01-01
@@ -52,9 +52,7 @@
-
- definition
-
+
@@ -288,9 +286,7 @@
-
- has_exact_synonym
-
+
@@ -2365,13 +2361,13 @@ For example, A and B may be gene products and binding of B by A positively regul
suffrutex (narrow)
- FNA:99508f62-7116-4e2b-90c0-19ff55ebd967
+ FNA:99508f62-7116-4e2b-90c0-19ff55ebd967
suffrutices (narrow)
- FNA:ba1b1bd5-75bd-4195-b11c-3aba08da08c2
+ FNA:ba1b1bd5-75bd-4195-b11c-3aba08da08c2
@@ -4240,7 +4236,7 @@ For example, A and B may be gene products and binding of B by A positively regul
androecium column (narrow)
- FNA:e0f4d402-3489-4a58-81bf-0fa5119a4db5
+ FNA:e0f4d402-3489-4a58-81bf-0fa5119a4db5
@@ -4327,7 +4323,7 @@ For example, A and B may be gene products and binding of B by A positively regul
gynoecia (exact, plural)
- FNA:226a743c-7988-4b66-b163-2ce80d7c8a70
+ FNA:226a743c-7988-4b66-b163-2ce80d7c8a70
@@ -4724,13 +4720,13 @@ For example, A and B may be gene products and binding of B by A positively regul
cycle (broad)
- FNA:d42df0a9-60f4-4c24-9c0b-ba815272f2fe
+ FNA:d42df0a9-60f4-4c24-9c0b-ba815272f2fe
verticil (broad)
- FNA:12607624-3d2a-4113-bd86-0e2557f2f473
+ FNA:12607624-3d2a-4113-bd86-0e2557f2f473
@@ -5848,7 +5844,7 @@ For example, A and B may be gene products and binding of B by A positively regul
A phyllome anlagen (PO:0025430) that will give rise to a vascular leaf primordium (PO:0000017) and is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148).
- PMID:14732442
+ PMID:14732442
POC:Laurel_Cooper
diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
index dcc6303..df9382c 100644
--- a/src/ontology/imports/ro_import.owl
+++ b/src/ontology/imports/ro_import.owl
@@ -16,9 +16,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
-
- 2021-12-26
+
+
+ 2022-01-01
@@ -54,10 +54,7 @@
-
-
- definition
-
+
@@ -91,12 +88,6 @@
-
-
-
-
-
-
@@ -211,48 +202,24 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
@@ -285,9 +252,7 @@
-
- has_exact_synonym
-
+
@@ -1898,21 +1863,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
- A relation that holds between an attribute or a qualifier and another attribute.
- Chris Mungall
-
- This relation is intended to be used in combination with PATO, to be able to refine PATO quality classes using modifiers such as 'abnormal' and 'normal'. It has yet to be formally aligned into an ontological framework; it's not clear what the ontological status of the "modifiers" are.
-
- has modifier
-
-
-
-
@@ -2372,90 +2322,31 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
- anatomical entity
-
-
-
-
-
-
-
-
- biological entity
-
+
-
-
- molecular process
- molecular_function
-
-
-
-
-
-
-
-
- catalytic activity
-
+
-
-
- biological_process
-
+
-
true
- kinase activity
-
-
-
-
-
-
-
-
- transferase activity
-
-
-
-
-
-
-
-
- transferase activity, transferring phosphorus-containing groups
-
-
-
-
-
-
-
-
- quality (PATO)
- quality
diff --git a/src/ontology/imports/stato_import.owl b/src/ontology/imports/stato_import.owl
index 6ae4494..f68ea66 100644
--- a/src/ontology/imports/stato_import.owl
+++ b/src/ontology/imports/stato_import.owl
@@ -9,11 +9,10 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
- xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
- xmlns:terms="http://purl.org/dc/terms/">
+ xmlns:swrlb="http://www.w3.org/2003/11/swrlb#">
-
- 2021-12-12
+
+ 2022-01-01
@@ -137,47 +136,12 @@
-
-
-
-
-
-
-
-
-
- Description may include but is not limited to: an abstract,
- table of contents, reference to a graphical representation
- of content or a free-text account of the content.
- An account of the content of the resource.
-
- Description
- Description
-
-
-
-
-
-
-
-
-
-
-
-
-
- Mark Miller
- 2018-05-11T13:47:29Z
-
-
-
-
@@ -2033,7 +1997,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
example to be eventually removed
@@ -2042,7 +2005,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.
metadata complete
@@ -2052,7 +2014,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
term created to ease viewing/sort terms for development purpose, and will not be included in a release
PERSON:Alan Ruttenberg
organizational term
@@ -2063,7 +2024,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."
ready for release
@@ -2073,7 +2033,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.
metadata incomplete
@@ -2083,7 +2042,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
Nothing done yet beyond assigning a unique class ID and proposing a preferred term.
uncurated
@@ -2093,7 +2051,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.
pending final vetting
@@ -2103,7 +2060,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
Terms with this status should eventually replaced with a term from another ontology.
Alan Ruttenberg
group:OBI
@@ -2115,7 +2071,6 @@ http://www.oed.com/view/Entry/221514?redirectedFrom=variable#eid, definition B,1
-
A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
Alan Ruttenberg
group:OBI
diff --git a/src/ontology/imports/uo_import.owl b/src/ontology/imports/uo_import.owl
index 725ecca..5054cce 100644
--- a/src/ontology/imports/uo_import.owl
+++ b/src/ontology/imports/uo_import.owl
@@ -8,8 +8,8 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oboInOwl="oboInOwl:">
-
- 2021-12-12
+
+ 2022-01-01
@@ -149,16 +149,13 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second." [BIPM:BIPM, NIST:NIST]
+ meter
+ m
+ metre
@@ -177,15 +174,11 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France." [BIPM:BIPM, NIST:NIST]
+ kilogram
+ kg
@@ -193,16 +186,12 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom." [BIPM:BIPM, NIST:NIST]
+ second
+ s
@@ -210,16 +199,12 @@
-
-
-
-
-
-
-
+ "An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length." [BIPM:BIPM, NIST:NIST]
+ ampere
+ A
@@ -227,16 +212,12 @@
-
-
-
-
-
-
-
+ "A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water." [BIPM:BIPM, NIST:NIST]
+ kelvin
+ K
@@ -244,16 +225,12 @@
-
-
-
-
-
-
-
+ "A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12." [BIPM:BIPM, NIST:NIST]
+ mole
+ mol
@@ -261,16 +238,12 @@
-
-
-
-
-
-
-
+ "A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian." [BIPM:BIPM, NIST:NIST]
+ candela
+ cd
@@ -289,14 +262,11 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to one hundredth of a meter or 10^[-2] m." [NIST:NIST]
+ centimeter
+ centimetre
+ cm
@@ -315,14 +285,11 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST]
+ millimeter
+ micrometre
+ mm
@@ -341,14 +308,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to one millionth of a meter or 10^[-6] m." [NIST:NIST]
+ micrometer
+ micrometre
+ micron
+ um
@@ -367,14 +332,11 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST]
+ nanometer
+ nanometre
+ nm
@@ -382,15 +344,11 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 10 [-10] m." [NIST:NIST]
+ angstrom
+ Å
@@ -409,14 +367,11 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 10^[-12] m." [NIST:NIST]
+ picometer
+ picometre
+ pm
@@ -424,15 +379,11 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg." [NIST:NIST]
+ gram
+ g
@@ -451,14 +402,10 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG]
+ milligram
+ mg
@@ -477,14 +424,10 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to one millionth of a gram or 10^[-6] g." [UOC:GVG]
+ microgram
+ ug
@@ -503,14 +446,10 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g." [UOC:GVG]
+ nanogram
+ ng
@@ -529,14 +468,10 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to 10^[-12] g." [UOC:GVG]
+ picogram
+ pg
@@ -555,14 +490,10 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to 10^[-15] g." [NIST:NIST]
+ femtogram
+ fg
@@ -570,15 +501,11 @@
-
-
-
-
-
-
-
+ "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K." [NIST:NIST]
+ degree Celsius
+ C
@@ -597,14 +524,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to one thousandth of a second or 10^[-3] s." [NIST:NIST]
+ millisecond
+ ms
@@ -623,14 +546,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to one millionth of a second or 10^[-6] s." [NIST:NIST]
+ microsecond
+ us
@@ -649,14 +568,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 10^[-12] s." [NIST:NIST]
+ picosecond
+ ps
@@ -664,15 +579,11 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 60 seconds." [Wikipedia:Wikipedia]
+ minute
+ min
@@ -680,15 +591,11 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 3600 seconds or 60 minutes." [Wikipedia:Wikipedia]
+ hour
+ h
@@ -696,15 +603,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 24 hours." [Wikipedia:Wikipedia]
+ day
@@ -712,15 +614,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 7 days." [Wikipedia:Wikipedia]
+ week
@@ -728,15 +625,10 @@
-
-
-
-
-
-
-
+ "A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days." [Wikipedia:Wikipedia]
+ month
@@ -744,15 +636,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days." [Wikipedia:Wikipedia]
+ year
@@ -771,14 +658,10 @@
-
-
-
-
-
-
-
+ "An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A." [UOC:GVG]
+ milliampere
+ mA
@@ -797,14 +680,10 @@
-
-
-
-
-
-
-
+ "An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A." [UOC:GVG]
+ microampere
+ uA
@@ -823,14 +702,10 @@
-
-
-
-
-
-
-
+ "A substance unit equal to a millionth of a mol or 10^[-6] mol." [NIST:NIST]
+ micromole
+ umol
@@ -849,14 +724,10 @@
-
-
-
-
-
-
-
+ "A substance unit equal to a thousandth of a mol or 10^[-3] mol." [NIST:NIST]
+ millimole
+ mmol
@@ -875,14 +746,10 @@
-
-
-
-
-
-
-
+ "A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol." [NIST:NIST]
+ nanomole
+ nmol
@@ -901,14 +768,10 @@
-
-
-
-
-
-
-
+ "A substance unit equal to 10^[-12] mol." [NIST:NIST]
+ picomole
+ pmol
@@ -927,14 +790,10 @@
-
-
-
-
-
-
-
+ "A substance unit equal to 10^[-15] mol." [NIST:NIST]
+ femtomole
+ fmol
@@ -953,14 +812,10 @@
-
-
-
-
-
-
-
+ "A substance unit equal to 10^[-18] mol." [NIST:NIST]
+ attomole
+ amol
@@ -1138,15 +993,11 @@
-
-
-
-
-
-
-
+ "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L)." [UOC:GVG]
+ molar
+ M
@@ -1165,14 +1016,10 @@
-
-
-
-
-
-
-
+ "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." [UOC:GVG]
+ millimolar
+ mM
@@ -1191,14 +1038,10 @@
-
-
-
-
-
-
-
+ "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M." [UOC:GVG]
+ micromolar
+ uM
@@ -1217,14 +1060,10 @@
-
-
-
-
-
-
-
+ "A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M." [UOC:GVG]
+ nanomolar
+ nM
@@ -1243,14 +1082,10 @@
-
-
-
-
-
-
-
+ "A unit of molarity which is equal to 10^[-12] M." [UOC:GVG]
+ picomolar
+ pM
@@ -1268,15 +1103,11 @@
-
-
-
-
-
-
-
+ "A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg)." [UOC:GVG]
+ molal
+ m
@@ -1295,14 +1126,10 @@
-
-
-
-
-
-
-
+ "A molality unit which is equal to one thousandth of a molal or 10^[-3] m." [UOC:GVG]
+ millimolal
+ mm
@@ -1321,14 +1148,10 @@
-
-
-
-
-
-
-
+ "A molality unit which is equal to one millionth of a molal or 10^[-6] m." [UOC:GVG]
+ micromolal
+ um
@@ -1347,14 +1170,10 @@
-
-
-
-
-
-
-
+ "A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m." [UOC:GVG]
+ nanomolal
+ nm
@@ -1373,14 +1192,10 @@
-
-
-
-
-
-
-
+ "A molality unit which is equal to 10^[-12] m." [UOC:GVG]
+ picomolal
+ pm
@@ -1399,14 +1214,10 @@
-
-
-
-
-
-
-
+ "A unit of molarity which is equal to 10^[-15] M." [UOC:GVG]
+ femtomolar
+ fM
@@ -1424,15 +1235,11 @@
-
-
-
-
-
-
-
+ "A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule." [Wikipedia:Wikipedia]
+ normal
+ N
@@ -1440,16 +1247,13 @@
-
-
-
-
-
-
-
+ "A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution." [Wikipedia:Wikipedia]
+ mole fraction
+ (x)
+ chi
@@ -1457,15 +1261,12 @@
-
-
-
-
-
-
-
+ "An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second." [NIST:NIST]
+ meter per second per second
+ m/s^[2]
+ metre per second per second
@@ -1473,15 +1274,12 @@
-
-
-
-
-
-
-
+ "An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second." [NIST:NIST]
+ radian per second per second
+ alpha
+ rad/s^[2]
@@ -1489,15 +1287,11 @@
-
-
-
-
-
-
-
+ "An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute)." [NIST:NIST]
+ radian per second
+ rad/s
@@ -1505,15 +1299,12 @@
-
-
-
-
-
-
-
+ "An area unit which is equal to an area enclosed by a square with sides each 1 meter long." [NIST:NIST]
+ square meter
+ m^[2]
+ square metre
@@ -1521,15 +1312,12 @@
-
-
-
-
-
-
-
+ "An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[2]." [NIST:NIST]
+ square centimeter
+ cm^[2]
+ square centimetre
@@ -1537,15 +1325,12 @@
-
-
-
-
-
-
-
+ "An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]." [NIST:NIST]
+ square millimeter
+ mm^[2]
+ square millimetre
@@ -1553,14 +1338,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters." [UOC:GVG]
+ kilogram per cubic meter
+ kg/m^[3]
+ kilogram per cubic metre
@@ -1568,15 +1350,12 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters." [UOC:GVG]
+ gram per cubic centimeter
+ g/cm^[3]
+ gram per cubic centimetre
@@ -1584,15 +1363,12 @@
-
-
-
-
-
-
-
+ "A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter." [NIST:NIST]
+ candela per square meter
+ candela per square metre
+ cd/m^[2]
@@ -1611,14 +1387,12 @@
-
-
-
-
-
-
-
+ "An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared." [NIST:NIST]
+ kilogram per square meter
+ Body Mass Index (BMI)
+ kg/m^[2]
+ kilogram per square metre
@@ -1637,14 +1411,10 @@
-
-
-
-
-
-
-
+ "A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound." [NIST:NIST]
+ kilogram per mole
+ kg/mol
@@ -1652,15 +1422,11 @@
-
-
-
-
-
-
-
+ "A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound." [NIST:NIST]
+ gram per mole
+ g/mol
@@ -1668,15 +1434,12 @@
-
-
-
-
-
-
-
+ "A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas." [NIST:NIST]
+ cubic meter per mole
+ cubic metre per mole
+ m^[3]/mol
@@ -1684,15 +1447,12 @@
-
-
-
-
-
-
-
+ "A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas." [NIST:NIST]
+ cubic centimeter per mole
+ cm^[3]/mol
+ cubic centimetre per mole
@@ -1700,14 +1460,11 @@
-
-
-
-
-
-
-
+ "A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second." [NIST:NIST]
+ kilogram meter per second
+ kg.m/s
+ kilogram metre per second
@@ -1715,15 +1472,12 @@
-
-
-
-
-
-
-
+ "A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second." [NIST:NIST]
+ turns per second
+ 1/s
+ one turn per second
@@ -1731,15 +1485,12 @@
-
-
-
-
-
-
-
+ "A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance." [NIST:NIST]
+ cubic meter per kilogram
+ cubic metre per kilogram
+ m^[3]/kg
@@ -1747,15 +1498,12 @@
-
-
-
-
-
-
-
+ "A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second." [NIST:NIST]
+ meter per second
+ m/s
+ metre per second
@@ -1773,15 +1521,12 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters." [NIST:NIST]
+ cubic meter
+ cubic metre
+ m^[3]
@@ -1789,19 +1534,17 @@
-
-
-
-
-
-
-
-
-
-
-
+ "A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml." [NIST:NIST]
+ cubic centimeter
+ cc
+ cm^3
+ cubic centimetre
+
+
+
+
@@ -1816,14 +1559,11 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter." [NIST:NIST]
+ milliliter
+ millilitre
+ ml
@@ -1831,15 +1571,13 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter." [NIST:NIST]
+ liter
+ L
+ l
+ litre
@@ -1847,15 +1585,12 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L." [NIST:NIST]
+ cubic decimeter
+ cubic decimetre
+ dm^[3]
@@ -1874,14 +1609,11 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to one millionth of a liter or 10^[-6] L." [NIST:NIST]
+ microliter
+ microlitre
+ ul
@@ -1900,14 +1632,11 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L." [NIST:NIST]
+ nanoliter
+ nanolitre
+ nl
@@ -1926,14 +1655,11 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to 10^[-12] L." [NIST:NIST]
+ picoliter
+ picolitre
+ pl
@@ -1952,14 +1678,11 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to 10^[-15] L." [NIST:NIST]
+ femtoliter
+ femtolitre
+ fl
@@ -1977,15 +1700,12 @@
-
-
-
-
-
-
-
+ "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second." [NIST:NIST]
+ hertz
+ Hz
+ s^1
@@ -2003,15 +1723,11 @@
-
-
-
-
-
-
-
+ "A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force." [NIST:NIST]
+ newton
+ N
@@ -2029,15 +1745,11 @@
-
-
-
-
-
-
-
+ "A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2]." [NIST:NIST]
+ pascal
+ Pa
@@ -2055,15 +1767,11 @@
-
-
-
-
-
-
-
+ "An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force." [NIST:NIST]
+ joule
+ J
@@ -2081,15 +1789,11 @@
-
-
-
-
-
-
-
+ "A power unit which is equal to the power used when work is done at the rate of 1 joule per second." [NIST:NIST]
+ watt
+ W
@@ -2107,15 +1811,11 @@
-
-
-
-
-
-
-
+ "An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2]." [NIST:NIST]
+ lux
+ lx
@@ -2133,15 +1833,11 @@
-
-
-
-
-
-
-
+ "A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela." [NIST:NIST]
+ lumen
+ lm
@@ -2159,15 +1855,11 @@
-
-
-
-
-
-
-
+ "A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second." [NIST:NIST]
+ katal
+ kat
@@ -2195,15 +1887,11 @@
-
-
-
-
-
-
-
+ "A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds." [NIST:NIST]
+ radian
+ rad
@@ -2221,15 +1909,11 @@
-
-
-
-
-
-
-
+ "A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared." [NIST:NIST]
+ steradian
+ sr
@@ -2287,15 +1971,11 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps)." [NIST:NIST]
+ becquerel
+ Bq
@@ -2303,15 +1983,11 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps)." [ORCBS:ORCBS]
+ curie
+ Ci
@@ -2319,15 +1995,11 @@
-
-
-
-
-
-
-
+ "An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter." [NIST:NIST]
+ gray
+ Gy
@@ -2335,15 +2007,10 @@
-
-
-
-
-
-
-
+ "An absorbed dose unit which is equal to 0.01 gray (Gy)." [Wikipedia:Wikipedia]
+ rad
@@ -2351,15 +2018,11 @@
-
-
-
-
-
-
-
+ "An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs." [Wikipedia:Wikipedia]
+ roentgen
+ R
@@ -2367,15 +2030,11 @@
-
-
-
-
-
-
-
+ "A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter." [NIST:NIST]
+ sievert
+ Sv
@@ -2394,14 +2053,10 @@
-
-
-
-
-
-
-
+ "A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv." [NIST:NIST]
+ millisievert
+ mSv
@@ -2420,14 +2075,10 @@
-
-
-
-
-
-
-
+ "A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv." [NIST:NIST]
+ microsievert
+ uSv
@@ -2435,15 +2086,11 @@
-
-
-
-
-
-
-
+ "A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem." [Wikipedia:Wikipedia]
+ Roentgen equivalent man
+ rem
@@ -2462,14 +2109,10 @@
-
-
-
-
-
-
-
+ "An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy." [NIST:NIST]
+ microgray
+ uGy
@@ -2488,14 +2131,10 @@
-
-
-
-
-
-
-
+ "An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy." [NIST:NIST]
+ milligray
+ mGy
@@ -2514,14 +2153,10 @@
-
-
-
-
-
-
-
+ "An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy." [NIST:NIST]
+ nanogray
+ nGy
@@ -2540,14 +2175,10 @@
-
-
-
-
-
-
-
+ "A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv." [NIST:NIST]
+ nanosievert
+ nSv
@@ -2566,14 +2197,10 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci." [ORCBS:ORCBS]
+ millicurie
+ mCi
@@ -2592,14 +2219,10 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci." [ORCBS:ORCBS]
+ microcurie
+ uCi
@@ -2607,15 +2230,11 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute." [ORCBS:ORCBS]
+ disintegrations per minute
+ dpm
@@ -2623,15 +2242,11 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute." [ORCBS:ORCBS]
+ counts per minute
+ cpm
@@ -2650,14 +2265,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s." [NIST:NIST]
+ nanosecond
+ ns
@@ -2665,15 +2276,10 @@
-
-
-
-
-
-
-
+ "A time unit which is equal to 100 years." [Wikipedia:Wikipedia]
+ century
@@ -2681,15 +2287,10 @@
-
-
-
-
-
-
-
+ "A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration." [MGED:MGED]
+ half life
@@ -2697,15 +2298,11 @@
-
-
-
-
-
-
-
+ "An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux." [Wikipedia:Wikipedia]
+ foot candle
+ ft-c
@@ -2723,15 +2320,12 @@
-
-
-
-
-
-
-
+ "An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area." [NIST:NIST]
+ watt per square meter
+ W/m^[2]
+ watt per square metre
@@ -2739,15 +2333,13 @@
-
-
-
-
-
-
-
+ "An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number." [Wikipedia:Wikipedia]
+ einstein per square meter per second
+ einstein per square metre per second
+ einstein/sm^[2]
+ mole per second and square meter mol/sm^2
@@ -2765,15 +2357,12 @@
-
-
-
-
-
-
-
+ "A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction." [NIST:NIST]
+ watt per steradian per square meter
+ W/sr m^[2]
+ watt per steradian per square metre
@@ -2802,14 +2391,12 @@
-
-
-
-
-
-
-
+ "An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2]." [Wikipedia:Wikipedia]
+ microeinstein per square meter per second
+ microeinstein per square metre per second
+ micromole per second and square meter mmol/sm^2
+ umicroeinstein/sm^[2]
@@ -2827,15 +2414,11 @@
-
-
-
-
-
-
-
+ "A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian." [NIST:NIST]
+ watt per steradian
+ W/sr
@@ -2843,16 +2426,13 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture." [Wikipedia:Wikipedia]
+ mass percentage
+ w/w
+ weight-weight percentage
@@ -2860,16 +2440,13 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG]
+ mass volume percentage
+ (w/v)
+ weight-volume percentage
@@ -2877,16 +2454,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution." [UOC:GVG]
+ volume percentage
+ % (v/v)
@@ -2904,15 +2477,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same." [UOC:GVG]
+ parts per hundred
+ 10^[-2]
+ pph
@@ -2920,15 +2490,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same." [UOC:GVG]
+ parts per thousand
+ 10^[-3]
+ ppth
@@ -2936,15 +2503,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6]." [UOC:GVG]
+ parts per million
+ 10^[-6]
+ ppm
@@ -2952,15 +2516,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9]." [UOC:GVG]
+ parts per billion
+ 10^[-9]
+ ppb
@@ -2968,15 +2529,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12]." [UOC:GVG]
+ parts per trillion
+ 10^[-12]
+ ppt
@@ -2984,15 +2542,12 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15]." [UOC:GVG]
+ parts per quadrillion
+ 10^[-15]
+ ppq
@@ -3000,15 +2555,12 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter." [UOC:GVG]
+ gram per milliliter
+ g/ml
+ gram per millilitre
@@ -3027,14 +2579,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters." [UOC:GVG]
+ kilogram per liter
+ kg/L
+ kilogram per litre
@@ -3042,15 +2591,12 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in grams divided by the volume in liters." [UOC:GVG]
+ gram per liter
+ g/L
+ gram per litre
@@ -3069,14 +2615,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters." [UOC:GVG]
+ milligram per milliliter
+ mg/ml
+ milligram per millilitre
@@ -3094,15 +2637,12 @@
-
-
-
-
-
-
-
+ "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter." [Webmd:Webmd]
+ unit per milliliter
+ U/ml
+ unit per millilitre
@@ -3110,15 +2650,12 @@
-
-
-
-
-
-
-
+ "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter." [UOC:GVG]
+ unit per liter
+ U/l
+ unit per litre
@@ -3126,15 +2663,10 @@
-
-
-
-
-
-
-
+ "A concentration unit which is a standard measure of the mass of a substance in a given volume (density)." [Wikipedia:Wikipedia]
+ mass per unit volume
@@ -3142,15 +2674,11 @@
-
-
-
-
-
-
-
+ "A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute." [Wikipedia:Wikipedia]
+ enzyme unit
+ U
@@ -3178,14 +2706,11 @@
-
-
-
-
-
-
-
+ "An area density unit which is equal to the mass of an object in kilograms divided by one meter." [NIST:NIST]
+ kilogram per meter
+ kg/m
+ kilogram per metre
@@ -3193,15 +2718,10 @@
-
-
-
-
-
-
-
+ "A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad." [Wikipedia:Wikipedia]
+ degree
@@ -3230,15 +2750,10 @@
-
-
-
-
-
-
-
+ "A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry." [Wikipedia:Wikipedia]
+ pi
@@ -3277,15 +2792,10 @@
-
-
-
-
-
-
-
+ "A dimensionless count unit which denotes the number of molecules." [MGED:MGED]
+ molecule count
@@ -3293,15 +2803,10 @@
-
-
-
-
-
-
-
+ "A dimensionless percent unit which denotes the homogeneity of a biomaterial." [MGED:MGED]
+ purity percentage
@@ -3309,15 +2814,10 @@
-
-
-
-
-
-
-
+ "A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture)." [MGED:MGED]
+ confluence percentage
@@ -3325,15 +2825,11 @@
-
-
-
-
-
-
-
+ "A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius." [Wikipedia:Wikipedia]
+ degree Fahrenheit
+ F
@@ -3341,16 +2837,11 @@
-
-
-
-
-
-
-
+ "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+)." [Wikipedia:Wikipedia]
+ pH
@@ -3358,18 +2849,15 @@
-
-
-
-
-
-
-
-
-
-
+ "A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance." [NIST:NIST]
+ liter per kilogram
+ l/kg
+ litre per kilogram
+
+
+
@@ -3385,14 +2873,11 @@
-
-
-
-
-
-
-
+ "A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg." [NIST:NIST]
+ milliliter per kilogram
+ millilitre per kilogram
+ ml/kg
@@ -3411,14 +2896,11 @@
-
-
-
-
-
-
-
+ "A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg." [NIST:NIST]
+ microliter per kilogram
+ microlitre per kilogram
+ ul/kg
@@ -3436,15 +2918,12 @@
-
-
-
-
-
-
-
+ "A unit of cell concentration which is equal to one cell in a volume of 1 milliliter." [Bioedonline:Bioedonline]
+ cells per milliliter
+ cells per millilitre
+ cells per ml
@@ -3462,15 +2941,12 @@
-
-
-
-
-
-
-
+ "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter." [NIST:NIST]
+ katal per cubic meter
+ kat/m^[3]
+ katal per cubic metre
@@ -3478,15 +2954,12 @@
-
-
-
-
-
-
-
+ "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter." [NIST:NIST]
+ katal per liter
+ kat/l
+ katal per litre
@@ -3504,14 +2977,11 @@
-
-
-
-
-
-
-
+ "A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution." [NIST:NIST]
+ milliliter per cubic meter
+ millilitre per cubic metre
+ ml/m^[3]
@@ -3519,14 +2989,11 @@
-
-
-
-
-
-
-
+ "A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution." [NIST:NIST]
+ milliliter per liter
+ millilitre per litre
+ ml/l
@@ -3534,15 +3001,12 @@
-
-
-
-
-
-
-
+ "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters." [UOC:GVG]
+ gram per deciliter
+ g/dl
+ gram per decilitre
@@ -3561,14 +3025,11 @@
-
-
-
-
-
-
-
+ "A volume unit which is equal to one tenth of a liter or 10^[-1] L." [NIST:NIST]
+ deciliter
+ decilitre
+ dl
@@ -3576,15 +3037,11 @@
-
-
-
-
-
-
-
+ "A dimensionless count unit which a measure of viable bacterial numbers." [Wikipedia:Wikipedia]
+ colony forming unit
+ cfu
@@ -3592,15 +3049,11 @@
-
-
-
-
-
-
-
+ "A dimensionless count unit which a measure of plague forming units in a given volume." [Wikipedia:Wikipedia]
+ plaque forming unit
+ pfu
@@ -3618,15 +3071,12 @@
-
-
-
-
-
-
-
+ "A colony forming unit which a measure of viable bacterial numbers in one milliliter." [Wikipedia:Wikipedia]
+ colony forming unit per milliliter
+ cfu/ml
+ colony forming unit per millilitre
@@ -3644,15 +3094,12 @@
-
-
-
-
-
-
-
+ "A concentration unit which a measure of plague forming units in one milliliter." [UOC:GVG]
+ plaque forming unit per milliliter
+ pfu/ml
+ plaque forming unit per millilitre
@@ -3660,15 +3107,11 @@
-
-
-
-
-
-
-
+ "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second." [ORCBS:ORCBS]
+ disintegrations per second
+ dps
@@ -3686,15 +3129,11 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy." [Wikipedia:Wikipedia]
+ volt
+ V
@@ -3712,15 +3151,11 @@
-
-
-
-
-
-
-
+ "An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second." [WordNet:WordNet]
+ coulomb
+ C
@@ -3728,15 +3163,14 @@
-
-
-
-
-
-
-
+ "An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state." [Wikipedia:Wikipedia]
+ dalton
+ Da
+ amu
+ u
+ unified atomic mass unit
@@ -3755,14 +3189,10 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to one thousand daltons." [Wikipedia:Wikipedia]
+ kilodalton
+ kDa
@@ -3770,15 +3200,11 @@
-
-
-
-
-
-
-
+ "An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour." [Wikipedia:Wikipedia]
+ watt-hour
+ Wh
@@ -3797,14 +3223,9 @@
-
-
-
-
-
-
-
+ "An energy unit which is equal to 1,000 watt-hours." [Wikipedia:Wikipedia]
+ kilowatt-hour
@@ -3822,15 +3243,13 @@
-
-
-
-
-
-
-
+ "A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt." [ScienceLobby:ScienceLobby]
+ weber
+ V s
+ Wb
+ volt-second
@@ -3849,15 +3268,12 @@
-
-
-
-
-
-
-
+ "A magnetic flux density unit which is equal to one weber per square meter." [WordNet:WordNet]
+ tesla
+ T
+ Wb/m2
@@ -3865,15 +3281,11 @@
-
-
-
-
-
-
-
+ "A magnetic flux unit which is equal to 3600 Wb." [UOC:GVG]
+ volt-hour
+ Vh
@@ -3892,14 +3304,10 @@
-
-
-
-
-
-
-
+ "A magnetic flux unit which is equal to one thousand volt-hours." [UOC:GVG]
+ kilovolt-hour
+ kVh
@@ -3917,15 +3325,10 @@
-
-
-
-
-
-
-
+ "An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1)." [Wikipedia:Wikipedia]
+ bit
@@ -3933,15 +3336,11 @@
-
-
-
-
-
-
-
+ "An information unit which is equal to 8 bits." [Wikipedia:Wikipedia]
+ byte
+ B
@@ -3960,14 +3359,10 @@
-
-
-
-
-
-
-
+ "An information unit which is equal to 1000 bytes." [Wikipedia:Wikipedia]
+ kilobyte
+ kB
@@ -3986,14 +3381,10 @@
-
-
-
-
-
-
-
+ "An information unit which is equal to 1000 kB." [Wikipedia:Wikipedia]
+ megabyte
+ MB
@@ -4011,15 +3402,10 @@
-
-
-
-
-
-
-
+ "An image resolution unit which is a standard measure of the amount of spatial detail in an image." [Wikipedia:Wikipedia]
+ chroma sampling unit
@@ -4027,15 +3413,10 @@
-
-
-
-
-
-
-
+ "An image resolution unit which is a standard measure of the amount of contrast available in a pixel." [Wikipedia:Wikipedia]
+ dynamic range unit
@@ -4053,15 +3434,11 @@
-
-
-
-
-
-
-
+ "A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space." [Wikipedia:Wikipedia]
+ dots per inch
+ dpi
@@ -4069,14 +3446,10 @@
-
-
-
-
-
-
-
+ "A spatial resolution unit which is equal to a pixel size of one micrometer." [Wikipedia:Wikipedia]
+ micron pixel
+ micrometer pixel
@@ -4084,15 +3457,12 @@
-
-
-
-
-
-
-
+ "A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions." [Wikipedia:Wikipedia]
+ pixels per inch
+ pixel density
+ ppi
@@ -4100,15 +3470,11 @@
-
-
-
-
-
-
-
+ "A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image." [Wikipedia:Wikipedia]
+ pixels per millimeter
+ pixels per millimetre
@@ -4116,15 +3482,12 @@
-
-
-
-
-
-
-
+ "A count unit which contains one nucleotide." [UO:GVG]
+ base pair
+ basepair
+ bp
@@ -4132,15 +3495,11 @@
-
-
-
-
-
-
-
+ "An information unit which is equal to 1024 B." [NIST:NIST]
+ kibibyte
+ KiB
@@ -4148,15 +3507,11 @@
-
-
-
-
-
-
-
+ "An information unit which is equal to 1024 KiB." [NIST:NIST]
+ mebibyte
+ MiB
@@ -4175,14 +3530,10 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V." [UOC:GVG]
+ millivolt
+ mV
@@ -4201,14 +3552,10 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to one thousand volts or 10^[3] V." [UOC:GVG]
+ kilovolt
+ kV
@@ -4227,14 +3574,10 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V." [UOC:GVG]
+ microvolt
+ uV
@@ -4253,14 +3596,10 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V." [UOC:GVG]
+ nanovolt
+ nV
@@ -4279,14 +3618,10 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V." [UOC:GVG]
+ picovolt
+ pV
@@ -4305,14 +3640,10 @@
-
-
-
-
-
-
-
+ "An electric potential difference unit which is equal to one million volts or 10^[6] V." [UOC:GVG]
+ megavolt
+ MV
@@ -4330,15 +3661,12 @@
-
-
-
-
-
-
-
+ "A surface tension unit which is equal to one newton per meter." [NIST:NIST]
+ newton per meter
+ N/m
+ newton per metre
@@ -4346,15 +3674,11 @@
-
-
-
-
-
-
-
+ "A surface tension unit which is equal to one dyne per centimeter." [Wikipedia:Wikipedia]
+ dyne per cm
+ dyn/cm
@@ -4372,15 +3696,11 @@
-
-
-
-
-
-
-
+ "A viscosity unit which is equal to one pascale per second." [NIST:NIST]
+ pascal second
+ Pa s
@@ -4388,15 +3708,12 @@
-
-
-
-
-
-
-
+ "A viscosity unit which is equal to one dyne second per square centimeter." [Wikipedia:Wikipedia]
+ poise
+ P
+ dyne s/cm^2
@@ -4404,14 +3721,10 @@
-
-
-
-
-
-
-
+ "A ratio unit which is an indicator of sound power per unit area." [techtarget:techtarget]
+ decibel
+ dB
@@ -4419,15 +3732,10 @@
-
-
-
-
-
-
-
+ "A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human." [Wikipedia:Wikipedia]
+ effective dose unit
@@ -4465,15 +3773,13 @@
-
-
-
-
-
-
-
+ "An electrical conduction unit which is equal to A/V." [NIST:NIST]
+ siemens
+ A V^-1
+ mho
+ S
@@ -4481,15 +3787,12 @@
-
-
-
-
-
-
-
+ "An heat conduction unit which is equal to one watt divided by meter kelvin." [NIST:NIST]
+ watt per meter kelvin
+ W/m K
+ watt per metre kelvin
@@ -4497,15 +3800,12 @@
-
-
-
-
-
-
-
+ "A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J." [Wikipedia:Wikipedia]
+ electronvolt
+ eV
+ electron volt
@@ -4524,15 +3824,12 @@
-
-
-
-
-
-
-
+ "The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_field]
+ volt per meter
+ V/m
+ volt per metre
@@ -4540,15 +3837,11 @@
-
-
-
-
-
-
-
+ "A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light." [Wikipedia:http\://en.wikipedia.org/wiki/Absorbance]
+ absorbance unit
+ AU
@@ -4566,14 +3859,11 @@
-
-
-
-
-
-
-
+ "A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute." [UOC:GVG]
+ microliters per minute
+ microlitres per minute
+ uL/min
@@ -4581,14 +3871,11 @@
-
-
-
-
-
-
-
+ "A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth." [url:en.wiktionary.org/wiki/mmHg]
+ millimetres of mercury
+ millimeters of mercury
+ mmHg
@@ -4607,14 +3894,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters." [UOC:GVG]
+ milligram per liter
+ mg/L
+ milligram per litre
@@ -4633,14 +3917,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters." [UOC:GVG]
+ microgram per milliliter
+ microgram per millilitre
+ ug/ml
@@ -4659,14 +3940,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters." [UOC:GVG]
+ nanogram per milliliter
+ nanogram per millilitre
+ ng/ml
@@ -4674,14 +3952,11 @@
-
-
-
-
-
-
-
+ "A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter." [UOC:GVG]
+ milliunits per milliliter
+ mU/ml
+ milliunits per millilitre
@@ -4699,15 +3974,11 @@
-
-
-
-
-
-
-
+ "A rate unit which is equal to one over one nanomolar second." [UOC:GVG]
+ count per nanomolar second
+ nM^-1 s^-1
@@ -4715,15 +3986,11 @@
-
-
-
-
-
-
-
+ "A rate unit which is equal to one over one molar second." [UOC:GVG]
+ count per molar second
+ M^-1 s^-1
@@ -4731,14 +3998,9 @@
-
-
-
-
-
-
-
+ "An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares." [UO:GVG]
+ kilogram per hectare
@@ -4746,15 +4008,12 @@
-
-
-
-
-
-
-
+ "A rate unit which is equal to one over one nanomolar." [UO:GVG]
+ count per nanomolar
+ 1/nM
+ nM^-1
@@ -4762,15 +4021,12 @@
-
-
-
-
-
-
-
+ "A rate unit which is equal to one over one molar." [UO:GVG]
+ count per molar
+ 1/M
+ M^-1
@@ -4884,14 +4140,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters." [UOC:GVG]
+ microgram per liter
+ microgram per litre
+ ug/L
@@ -4945,14 +4198,9 @@
-
-
-
-
-
-
-
+ "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]
+ milligram per kilogram
@@ -4971,14 +4219,9 @@
-
-
-
-
-
-
-
+ "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per square meter of surface area of the recipient subject." [UO:PC]
+ milligram per square meter
@@ -4986,30 +4229,10 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+ "A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered over time to a recipient subject, expressed in terms of the size of the subject." [UO:PC]
+ dosage unit
@@ -5017,15 +4240,10 @@
-
-
-
-
-
-
-
+ "A derived unit which is a measure of relative light intensity, as typically measured by a luminometer, spectrophotometer, or fluorimeter in biological research applications." [UO:PC]
+ relative light unit
@@ -5033,15 +4251,9 @@
-
-
-
-
-
-
-
-
+ "A relative light unit which is a measure of relative luminescence intensity." [UO:PC]
+ relative luminescence unit
@@ -5049,15 +4261,9 @@
-
-
-
-
-
-
-
-
+ "A relative light unit which is a measure of relative fluorescence intensity." [UO:PC]
+ relative fluorescence unit
@@ -5065,14 +4271,10 @@
-
-
-
-
-
-
-
+ "A frequency unit which is equal to one million hertz or 10^[6] V." [UOC:GVG]
+ megaHertz
+ mH
@@ -5080,14 +4282,10 @@
-
-
-
-
-
-
-
+ "A unit used to express distances on a genetic map. In genetic mapping, distances between markers are determined by measuring the rate of meoitic recombination between them, which increases proportionately with the distance separating them. A cM is defined as the length of an interval in which there is a 1% probability of recombination. On the average, 1 cM is roughly equivalent to 1 megabase (Mb) of DNA, although this can vary widely due to hot and cold spots of recombination." [NCBI:http\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]
+ centiMorgan
+ cM
@@ -5095,14 +4293,10 @@
-
-
-
-
-
-
-
+ "A unit of genetic map distance defined corresponding to an interval in which there is a 1% probability of X-irradiation induced breakage. To be completely specified, the unit must be qualified by the radiation in dosage in rads (e.g. cR8000), because this determines the actual breakage probability." [NCBI:http\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]
+ centiRay
+ cR
@@ -5121,14 +4315,10 @@
-
-
-
-
-
-
-
-
+ "A unit equal to one million base pairs" [UOC:GVG]
+ mega base pair
+ Mb
+ megabasepair
@@ -5147,14 +4337,10 @@
-
-
-
-
-
-
-
-
+ "A unit equal to one billion base pairs." [UOC:GVG]
+ giga base pair
+ Gb
+ gigabasepair
@@ -5162,15 +4348,11 @@
-
-
-
-
-
-
-
+ "An area unit which is equal to an area enclosed by a square with sides each 1 micrometer long." [NIST:NIST]
+ square micrometer
+ square micrometre
@@ -5189,14 +4371,10 @@
-
-
-
-
-
-
-
+ "An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] siemens." [NIST:NIST]
+ millisiemens
+ mS
@@ -5204,14 +4382,9 @@
-
-
-
-
-
-
-
+ "A specific concentration unit which is equal to 1 micromole in a given volume of one thousandth of a cubic meter." [NIST:NIST]
+ micromole per litre
@@ -5219,14 +4392,9 @@
-
-
-
-
-
-
-
+ "A specific concentration unit which is equal to 1 micromole of a given substance per kilogram of solvent." [UOB:LKSR]
+ micromole per kilogram
@@ -5234,14 +4402,10 @@
-
-
-
-
-
-
-
+ "A speed/velocity unit which is equal to the speed of an object traveling 1 millimeter distance in one day." [UOB:LKSR]
+ millimeters per day
+ mm/day
@@ -5249,14 +4413,11 @@
-
-
-
-
-
-
-
+ "A speed/velocity unit which is equal to the speed of an object traveling 1 kilometer distance in one hour." [NIST:NIST]
+ kilometer per hour
+ kilometre per hour
+ km/h
@@ -5264,14 +4425,13 @@
-
-
-
-
-
-
-
+ "A mass unit which is equal to 1/12 the mass of 12C" [Wikipedia:Wikipedia]
+ milli
+ mDa
+ milli unified atomic mass unit
+ millidalton
+ mmu
@@ -5279,15 +4439,11 @@
-
-
-
-
-
-
-
+ "An area unit which is equal to an area of 10,000 square meters. Equivalent to 2.471 acres." [Wikipedia:Wikipedia]
+ hectare
+ HA
@@ -5295,16 +4451,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 0.0254 metres." [Wikipedia:Wikpiedia]
+ inch
+ in
@@ -5312,16 +4464,13 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 0.0254 millimetres." [Wikipedia:Wikpiedia]
+ thou
+ mil
+ th
@@ -5329,16 +4478,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 0.3048 metres, or 12 inches." [Wikipedia:Wikpiedia]
+ foot
+ ft
@@ -5346,16 +4491,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 0.9144 metres, or 3 feet." [Wikipedia:Wikpiedia]
+ yard
+ yd
@@ -5363,16 +4504,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards." [Wikipedia:Wikpiedia]
+ chain
+ ch
@@ -5380,16 +4517,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains." [Wikipedia:Wikpiedia]
+ furlong
+ fur
@@ -5397,16 +4530,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 1,609.344 metres, or 8 furlongs." [Wikipedia:Wikpiedia]
+ mile
+ mi
@@ -5414,16 +4543,12 @@
-
-
-
-
-
-
-
+ "A length unit which is equal to 3 miles, or 4,828.032 metres" [Wikipedia:Wikpiedia]
+ league
+ lea
@@ -5431,15 +4556,10 @@
-
-
-
-
-
-
-
+ "A maritime length unit is one used primarily at sea." [Wikipedia:Wikpiedia]
+ maritime length unit
@@ -5447,15 +4567,10 @@
-
-
-
-
-
-
-
-
+ "A maritime length unit which is equal to 6.08 feet, or 1.853184 metres" [Wikipedia:Wikpiedia]
+ fathom
+ ftm
@@ -5463,15 +4578,9 @@
-
-
-
-
-
-
-
-
+ "A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres" [Wikipedia:Wikpiedia]
+ cable
@@ -5479,15 +4588,9 @@
-
-
-
-
-
-
-
-
+ "A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,853.184 metres" [Wikipedia:Wikpiedia]
+ nautical mile
@@ -5495,15 +4598,10 @@
-
-
-
-
-
-
-
+ "An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod." [Wikipedia:Wikipedia]
+ perch
@@ -5511,15 +4609,10 @@
-
-
-
-
-
-
-
+ "An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,011.714,1056 square meters, or 40 square rods." [Wikipedia:Wikipedia]
+ rood
@@ -5527,15 +4620,10 @@
-
-
-
-
-
-
-
+ "An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,046.856,4224 square meters, or 43,500 square feet." [Wikipedia:Wikipedia]
+ acre
@@ -5543,15 +4631,11 @@
-
-
-
-
-
-
-
+ "An imperial volume unit which is equivalent to 28.413,0625 millilitres." [Wikipedia:Wikipedia]
+ fluid ounce
+ fl oz
@@ -5559,15 +4643,11 @@
-
-
-
-
-
-
-
+ "An imperial volume unit which is equivalent to 142.065,3125 millilitres." [Wikipedia:Wikipedia]
+ gill
+ gi
@@ -5575,15 +4655,11 @@
-
-
-
-
-
-
-
+ "An imperial volume unit which is equivalent to 568.261,25 millilitres." [Wikipedia:Wikipedia]
+ pint
+ pt
@@ -5591,15 +4667,11 @@
-
-
-
-
-
-
-
+ "An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints." [Wikipedia:Wikipedia]
+ quart
+ qt
@@ -5607,15 +4679,11 @@
-
-
-
-
-
-
-
+ "An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints." [Wikipedia:Wikipedia]
+ gallon
+ gal
@@ -5623,15 +4691,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 64.798,91 milligrams." [Wikipedia:Wikipedia]
+ grain
+ gr
@@ -5639,15 +4703,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound." [Wikipedia:Wikipedia]
+ drachm
+ dr
@@ -5655,15 +4715,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound." [Wikipedia:Wikipedia]
+ ounce
+ oz
@@ -5671,15 +4727,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 453.592,37 grams." [Wikipedia:Wikipedia]
+ pound
+ lb
@@ -5687,15 +4739,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds." [Wikipedia:Wikipedia]
+ stone
+ st
@@ -5703,15 +4751,12 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds." [Wikipedia:Wikipedia]
+ quarter
+ qr
+ qtr
@@ -5719,15 +4764,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 50.802,345,44 kilograms, 112 pounds, or 8 stone." [Wikipedia:Wikipedia]
+ hundredweight
+ cwt
@@ -5735,15 +4776,11 @@
-
-
-
-
-
-
-
+ "An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds." [Wikipedia:Wikipedia]
+ ton
+ t
@@ -5751,15 +4788,10 @@
-
-
-
-
-
-
-
+ "An imperial gravitational unit which is equivalent to a mass that accelerates by 1ft/s² when a force of one pound (lbf) is exerted on it." [Wikipedia:Wikipedia]
+ slug
@@ -5767,15 +4799,12 @@
-
-
-
-
-
-
-
+ "A metric teaspoon is a unit of measurement of volume widely used in cooking recipes and pharmaceutic prescriptions. It equals a 5mL volume." [Wikipedia:https://en.wikipedia.org/wiki/Teaspoon]
+ teaspoon
+ metric teaspoon
+ tsp
@@ -5794,14 +4823,10 @@
-
-
-
-
-
-
-
+ "A substance unit which is equal to one millionth of a mole." [UOB:LTS]
+ micromole
+ mmol
@@ -5809,15 +4834,12 @@
-
-
-
-
-
-
-
+ "An area density unit which is equal to the mass of an object in grams divided by the surface area in meters squared." [NIST:NIST]
+ gram per square meter
+ g/m^[2]
+ gram per square metre
@@ -5825,14 +4847,11 @@
-
-
-
-
-
-
-
+ "A mass unit density which is equal to mass of an object in nanograms divided by the volume in microliters." [UOB:LTS]
+ nanogram per microliter
+ nanogram per microlitre
+ ng/ul
@@ -5840,15 +4859,16 @@
-
-
-
-
-
-
-
+ "A unit of energy widely used in nutrition, equivalent to the amount of heat needed to cause one kilogram of water to rise in temperature by one degree Celsius." [Wikipedia:Wikipedia]
+ large calorie
+ big calorie
+ cal
+ calorie
+ food calorie
+ kcal
+ kilocalorie
@@ -5856,14 +4876,10 @@
-
-
-
-
-
-
-
+ "A unit of mass concentration defined as the number of micrograms of a substance per 250 ml Wheaton bottle." [UOB:LTS]
+ micrograms per wheaton bottle
+ micrograms per bottle
@@ -5882,14 +4898,10 @@
-
-
-
-
-
-
-
+ "An electric current unit current which is equal to one trillionth of an ampere or 10^[-12] A." [UOB:LTS]
+ picoampere
+ pA
@@ -5908,14 +4920,10 @@
-
-
-
-
-
-
-
+ "An absorbed dose unit which is equal to 0.01 gray (Gy)"
+ centigray
+ cGy
@@ -5934,14 +4942,10 @@
-
-
-
-
-
-
-
+ "A unit of energy that is equal to one thousand million electronvolts."
+ gigaelectronvolt
+ GeV
@@ -5949,14 +4953,10 @@
-
-
-
-
-
-
-
+ "Derived unit which is equal to the total kinetic energy of an atomic nucleus in GeV divided by the number of nucleons in the nucleus"
+ gigaelectronvolt per nucleon
+ GeV/nucleon
@@ -5964,14 +4964,10 @@
-
-
-
-
-
-
-
+ "Derived unit which is equal to the total kinetic energy of an atomic nucleus in MeV divided by the number of nucleons in the nucleus"
+ megaelectronvolt per nucleon
+ MeV/nucleon
@@ -5979,14 +4975,10 @@
-
-
-
-
-
-
-
+ "A derived unit equal to the energy deposited by ionizing radiation per micron of path length in matter"
+ kiloelectronvolt per micron
+ keV/micron
@@ -5994,15 +4986,11 @@
-
-
-
-
-
-
-
+ "A derived absorbed dose unit which is equal to one gray absorbed per minute."
+ gray per minute
+ Gy/min
@@ -6021,14 +5009,10 @@
-
-
-
-
-
-
-
+ "A derived absorbed dose unit which is equal to one centigray absorbed per minute."
+ centigray per minute
+ cGy/min
@@ -6047,14 +5031,10 @@
-
-
-
-
-
-
-
+ "A derived absorbed dose unit which is equal to one milligray absorbed per minute."
+ milligray per minute
+ mGy/min
@@ -6062,14 +5042,10 @@
-
-
-
-
-
-
-
+ "A derived absorbed dose unit which is equal to one milligray absorbed per day."
+ milligray per day
+ mGy/min
@@ -7567,3065 +6543,15 @@
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- m
- meter
- metre
- "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second." [BIPM:BIPM, NIST:NIST]
-
-
- kg
- kilogram
- "A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France." [BIPM:BIPM, NIST:NIST]
-
-
- s
- second
- "A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom." [BIPM:BIPM, NIST:NIST]
-
-
- "An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length." [BIPM:BIPM, NIST:NIST]
- ampere
- A
-
-
- "A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water." [BIPM:BIPM, NIST:NIST]
- K
- kelvin
-
-
- "A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12." [BIPM:BIPM, NIST:NIST]
- mol
- mole
-
-
- "A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian." [BIPM:BIPM, NIST:NIST]
- candela
- cd
-
-
- centimeter
- centimetre
- cm
- "A length unit which is equal to one hundredth of a meter or 10^[-2] m." [NIST:NIST]
-
-
- micrometre
- mm
- millimeter
- "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST]
-
-
- micron
- "A length unit which is equal to one millionth of a meter or 10^[-6] m." [NIST:NIST]
- micrometre
- um
- micrometer
-
-
- nm
- nanometre
- nanometer
- "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST]
-
-
- Å
- angstrom
- "A length unit which is equal to 10 [-10] m." [NIST:NIST]
-
-
- pm
- picometre
- picometer
- "A length unit which is equal to 10^[-12] m." [NIST:NIST]
-
-
- gram
- g
- "A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg." [NIST:NIST]
-
-
- milligram
- mg
- "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG]
-
-
- "A mass unit which is equal to one millionth of a gram or 10^[-6] g." [UOC:GVG]
- microgram
- ug
-
-
- ng
- "A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g." [UOC:GVG]
- nanogram
-
-
- pg
- "A mass unit which is equal to 10^[-12] g." [UOC:GVG]
- picogram
-
-
- "A mass unit which is equal to 10^[-15] g." [NIST:NIST]
- femtogram
- fg
-
-
- degree Celsius
- "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K." [NIST:NIST]
- C
-
-
- "A time unit which is equal to one thousandth of a second or 10^[-3] s." [NIST:NIST]
- millisecond
- ms
-
-
- us
- microsecond
- "A time unit which is equal to one millionth of a second or 10^[-6] s." [NIST:NIST]
-
-
- picosecond
- "A time unit which is equal to 10^[-12] s." [NIST:NIST]
- ps
-
-
- minute
- min
- "A time unit which is equal to 60 seconds." [Wikipedia:Wikipedia]
-
-
- hour
- h
- "A time unit which is equal to 3600 seconds or 60 minutes." [Wikipedia:Wikipedia]
-
-
- "A time unit which is equal to 24 hours." [Wikipedia:Wikipedia]
- day
-
-
- week
- "A time unit which is equal to 7 days." [Wikipedia:Wikipedia]
-
-
- month
- "A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days." [Wikipedia:Wikipedia]
-
-
- "A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days." [Wikipedia:Wikipedia]
- year
-
-
- "An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A." [UOC:GVG]
- mA
- milliampere
-
-
- microampere
- uA
- "An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A." [UOC:GVG]
-
-
- "A substance unit equal to a millionth of a mol or 10^[-6] mol." [NIST:NIST]
- umol
- micromole
-
-
- "A substance unit equal to a thousandth of a mol or 10^[-3] mol." [NIST:NIST]
- millimole
- mmol
-
-
- nmol
- "A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol." [NIST:NIST]
- nanomole
-
-
- "A substance unit equal to 10^[-12] mol." [NIST:NIST]
- pmol
- picomole
-
-
- femtomole
- "A substance unit equal to 10^[-15] mol." [NIST:NIST]
- fmol
-
-
- amol
- attomole
- "A substance unit equal to 10^[-18] mol." [NIST:NIST]
-
-
- "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L)." [UOC:GVG]
- M
- molar
-
-
- millimolar
- mM
- "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." [UOC:GVG]
-
-
- micromolar
- uM
- "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M." [UOC:GVG]
-
-
- "A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M." [UOC:GVG]
- nanomolar
- nM
-
-
- "A unit of molarity which is equal to 10^[-12] M." [UOC:GVG]
- picomolar
- pM
-
-
- molal
- "A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg)." [UOC:GVG]
- m
-
-
- mm
- millimolal
- "A molality unit which is equal to one thousandth of a molal or 10^[-3] m." [UOC:GVG]
-
-
- micromolal
- "A molality unit which is equal to one millionth of a molal or 10^[-6] m." [UOC:GVG]
- um
-
-
- nanomolal
- "A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m." [UOC:GVG]
- nm
-
-
- picomolal
- pm
- "A molality unit which is equal to 10^[-12] m." [UOC:GVG]
-
-
- fM
- femtomolar
- "A unit of molarity which is equal to 10^[-15] M." [UOC:GVG]
-
-
- normal
- "A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule." [Wikipedia:Wikipedia]
- N
-
-
- (x)
- chi
- mole fraction
- "A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution." [Wikipedia:Wikipedia]
-
-
- meter per second per second
- metre per second per second
- "An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second." [NIST:NIST]
- m/s^[2]
-
-
- "An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second." [NIST:NIST]
- alpha
- rad/s^[2]
- radian per second per second
-
-
- rad/s
- "An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute)." [NIST:NIST]
- radian per second
-
-
- "An area unit which is equal to an area enclosed by a square with sides each 1 meter long." [NIST:NIST]
- m^[2]
- square meter
- square metre
-
-
- square centimetre
- cm^[2]
- "An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[2]." [NIST:NIST]
- square centimeter
-
-
- square millimeter
- "An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]." [NIST:NIST]
- square millimetre
- mm^[2]
-
-
- kg/m^[3]
- "A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters." [UOC:GVG]
- kilogram per cubic metre
- kilogram per cubic meter
-
-
- gram per cubic centimeter
- "A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters." [UOC:GVG]
- gram per cubic centimetre
- g/cm^[3]
-
-
- cd/m^[2]
- candela per square metre
- candela per square meter
- "A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter." [NIST:NIST]
-
-
- "An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared." [NIST:NIST]
- kilogram per square metre
- Body Mass Index (BMI)
- kilogram per square meter
- kg/m^[2]
-
-
- kg/mol
- "A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound." [NIST:NIST]
- kilogram per mole
-
-
- g/mol
- "A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound." [NIST:NIST]
- gram per mole
-
-
- cubic meter per mole
- m^[3]/mol
- cubic metre per mole
- "A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas." [NIST:NIST]
-
-
- cm^[3]/mol
- cubic centimetre per mole
- cubic centimeter per mole
- "A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas." [NIST:NIST]
-
-
- "A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second." [NIST:NIST]
- kg.m/s
- kilogram metre per second
- kilogram meter per second
-
-
- one turn per second
- "A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second." [NIST:NIST]
- turns per second
- 1/s
-
-
- cubic metre per kilogram
- "A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance." [NIST:NIST]
- m^[3]/kg
- cubic meter per kilogram
-
-
- m/s
- meter per second
- "A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second." [NIST:NIST]
- metre per second
-
-
- cubic meter
- m^[3]
- cubic metre
- "A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters." [NIST:NIST]
-
-
- cubic centimetre
- cubic centimeter
- cm^3
- cc
- "A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml." [NIST:NIST]
-
-
- "A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter." [NIST:NIST]
- milliliter
- ml
- millilitre
-
-
- litre
- l
- L
- "A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter." [NIST:NIST]
- liter
-
-
- "A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L." [NIST:NIST]
- dm^[3]
- cubic decimeter
- cubic decimetre
-
-
- microliter
- microlitre
- ul
- "A volume unit which is equal to one millionth of a liter or 10^[-6] L." [NIST:NIST]
-
-
- nl
- nanoliter
- "A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L." [NIST:NIST]
- nanolitre
-
-
- picoliter
- pl
- picolitre
- "A volume unit which is equal to 10^[-12] L." [NIST:NIST]
-
-
- femtolitre
- femtoliter
- "A volume unit which is equal to 10^[-15] L." [NIST:NIST]
- fl
-
-
- Hz
- "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second." [NIST:NIST]
- hertz
- s^1
-
-
- "A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force." [NIST:NIST]
- N
- newton
-
-
- pascal
- Pa
- "A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2]." [NIST:NIST]
-
-
- joule
- "An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force." [NIST:NIST]
- J
-
-
- watt
- "A power unit which is equal to the power used when work is done at the rate of 1 joule per second." [NIST:NIST]
- W
-
-
- lux
- "An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2]." [NIST:NIST]
- lx
-
-
- lumen
- "A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela." [NIST:NIST]
- lm
-
-
- katal
- "A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second." [NIST:NIST]
- kat
-
-
- "A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds." [NIST:NIST]
- radian
- rad
-
-
- sr
- "A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared." [NIST:NIST]
- steradian
-
-
- becquerel
- Bq
- "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps)." [NIST:NIST]
-
-
- "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps)." [ORCBS:ORCBS]
- curie
- Ci
-
-
- "An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter." [NIST:NIST]
- Gy
- gray
-
-
- "An absorbed dose unit which is equal to 0.01 gray (Gy)." [Wikipedia:Wikipedia]
- rad
-
-
- "An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs." [Wikipedia:Wikipedia]
- roentgen
- R
-
-
- "A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter." [NIST:NIST]
- sievert
- Sv
-
-
- mSv
- millisievert
- "A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv." [NIST:NIST]
-
-
- "A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv." [NIST:NIST]
- uSv
- microsievert
-
-
- "A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem." [Wikipedia:Wikipedia]
- rem
- Roentgen equivalent man
-
-
- microgray
- "An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy." [NIST:NIST]
- uGy
-
-
- "An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy." [NIST:NIST]
- mGy
- milligray
-
-
- "An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy." [NIST:NIST]
- nanogray
- nGy
-
-
- nSv
- "A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv." [NIST:NIST]
- nanosievert
-
-
- "An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci." [ORCBS:ORCBS]
- millicurie
- mCi
-
-
- microcurie
- "An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci." [ORCBS:ORCBS]
- uCi
-
-
- disintegrations per minute
- "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute." [ORCBS:ORCBS]
- dpm
-
-
- "An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute." [ORCBS:ORCBS]
- counts per minute
- cpm
-
-
- nanosecond
- "A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s." [NIST:NIST]
- ns
-
-
- "A time unit which is equal to 100 years." [Wikipedia:Wikipedia]
- century
-
-
- half life
- "A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration." [MGED:MGED]
-
-
- "An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux." [Wikipedia:Wikipedia]
- foot candle
- ft-c
-
-
- watt per square metre
- "An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area." [NIST:NIST]
- W/m^[2]
- watt per square meter
-
-
- einstein per square metre per second
- einstein per square meter per second
- mole per second and square meter mol/sm^2
- "An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number." [Wikipedia:Wikipedia]
- einstein/sm^[2]
-
-
- W/sr m^[2]
- "A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction." [NIST:NIST]
- watt per steradian per square metre
- watt per steradian per square meter
-
-
- microeinstein per square metre per second
- microeinstein per square meter per second
- umicroeinstein/sm^[2]
- micromole per second and square meter mmol/sm^2
- "An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2]." [Wikipedia:Wikipedia]
-
-
- watt per steradian
- "A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian." [NIST:NIST]
- W/sr
-
-
- w/w
- weight-weight percentage
- mass percentage
- "A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture." [Wikipedia:Wikipedia]
-
-
- mass volume percentage
- weight-volume percentage
- "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG]
- (w/v)
-
-
- volume percentage
- "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution." [UOC:GVG]
- % (v/v)
-
-
- pph
- parts per hundred
- "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same." [UOC:GVG]
- 10^[-2]
-
-
- ppth
- 10^[-3]
- parts per thousand
- "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same." [UOC:GVG]
-
-
- 10^[-6]
- "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6]." [UOC:GVG]
- ppm
- parts per million
-
-
- parts per billion
- "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9]." [UOC:GVG]
- 10^[-9]
- ppb
-
-
- "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12]." [UOC:GVG]
- 10^[-12]
- parts per trillion
- ppt
-
-
- "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15]." [UOC:GVG]
- 10^[-15]
- parts per quadrillion
- ppq
-
-
- gram per millilitre
- gram per milliliter
- "A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter." [UOC:GVG]
- g/ml
-
-
- kilogram per litre
- kilogram per liter
- "A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters." [UOC:GVG]
- kg/L
-
-
- gram per litre
- "A mass unit density which is equal to mass of an object in grams divided by the volume in liters." [UOC:GVG]
- gram per liter
- g/L
-
-
- mg/ml
- "A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters." [UOC:GVG]
- milligram per milliliter
- milligram per millilitre
-
-
- unit per milliliter
- U/ml
- unit per millilitre
- "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter." [Webmd:Webmd]
-
-
- unit per liter
- U/l
- "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter." [UOC:GVG]
- unit per litre
-
-
- "A concentration unit which is a standard measure of the mass of a substance in a given volume (density)." [Wikipedia:Wikipedia]
- mass per unit volume
-
-
- enzyme unit
- U
- "A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute." [Wikipedia:Wikipedia]
-
-
- kg/m
- "An area density unit which is equal to the mass of an object in kilograms divided by one meter." [NIST:NIST]
- kilogram per metre
- kilogram per meter
-
-
- "A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad." [Wikipedia:Wikipedia]
- degree
-
-
- "A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry." [Wikipedia:Wikipedia]
- pi
-
-
- "A dimensionless count unit which denotes the number of molecules." [MGED:MGED]
- molecule count
-
-
- "A dimensionless percent unit which denotes the homogeneity of a biomaterial." [MGED:MGED]
- purity percentage
-
-
- "A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture)." [MGED:MGED]
- confluence percentage
-
-
- F
- "A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius." [Wikipedia:Wikipedia]
- degree Fahrenheit
-
-
- pH
- "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+)." [Wikipedia:Wikipedia]
-
-
- "A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance." [NIST:NIST]
- litre per kilogram
- liter per kilogram
- l/kg
-
-
- millilitre per kilogram
- milliliter per kilogram
- ml/kg
- "A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg." [NIST:NIST]
-
-
- microliter per kilogram
- ul/kg
- microlitre per kilogram
- "A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg." [NIST:NIST]
-
-
- cells per ml
- "A unit of cell concentration which is equal to one cell in a volume of 1 milliliter." [Bioedonline:Bioedonline]
- cells per millilitre
- cells per milliliter
-
-
- kat/m^[3]
- katal per cubic metre
- "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter." [NIST:NIST]
- katal per cubic meter
-
-
- "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter." [NIST:NIST]
- katal per litre
- katal per liter
- kat/l
-
-
- millilitre per cubic metre
- ml/m^[3]
- "A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution." [NIST:NIST]
- milliliter per cubic meter
-
-
- ml/l
- milliliter per liter
- millilitre per litre
- "A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution." [NIST:NIST]
-
-
- "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters." [UOC:GVG]
- g/dl
- gram per decilitre
- gram per deciliter
-
-
- deciliter
- "A volume unit which is equal to one tenth of a liter or 10^[-1] L." [NIST:NIST]
- decilitre
- dl
-
-
- cfu
- colony forming unit
- "A dimensionless count unit which a measure of viable bacterial numbers." [Wikipedia:Wikipedia]
-
-
- pfu
- plaque forming unit
- "A dimensionless count unit which a measure of plague forming units in a given volume." [Wikipedia:Wikipedia]
-
-
- colony forming unit per millilitre
- colony forming unit per milliliter
- "A colony forming unit which a measure of viable bacterial numbers in one milliliter." [Wikipedia:Wikipedia]
- cfu/ml
-
-
- plaque forming unit per millilitre
- plaque forming unit per milliliter
- pfu/ml
- "A concentration unit which a measure of plague forming units in one milliliter." [UOC:GVG]
-
-
- dps
- disintegrations per second
- "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second." [ORCBS:ORCBS]
-
-
- "An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy." [Wikipedia:Wikipedia]
- volt
- V
-
-
- "An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second." [WordNet:WordNet]
- C
- coulomb
-
-
- Da
- dalton
- u
- amu
- unified atomic mass unit
- "An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state." [Wikipedia:Wikipedia]
-
-
- kilodalton
- kDa
- "A mass unit which is equal to one thousand daltons." [Wikipedia:Wikipedia]
-
-
- Wh
- "An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour." [Wikipedia:Wikipedia]
- watt-hour
-
-
- "An energy unit which is equal to 1,000 watt-hours." [Wikipedia:Wikipedia]
- kilowatt-hour
-
-
- weber
- "A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt." [ScienceLobby:ScienceLobby]
- Wb
- V s
- volt-second
-
-
- Wb/m2
- tesla
- "A magnetic flux density unit which is equal to one weber per square meter." [WordNet:WordNet]
- T
-
-
- Vh
- volt-hour
- "A magnetic flux unit which is equal to 3600 Wb." [UOC:GVG]
-
-
- kilovolt-hour
- kVh
- "A magnetic flux unit which is equal to one thousand volt-hours." [UOC:GVG]
-
-
- "An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1)." [Wikipedia:Wikipedia]
- bit
-
-
- B
- "An information unit which is equal to 8 bits." [Wikipedia:Wikipedia]
- byte
-
-
- "An information unit which is equal to 1000 bytes." [Wikipedia:Wikipedia]
- kilobyte
- kB
-
-
- megabyte
- "An information unit which is equal to 1000 kB." [Wikipedia:Wikipedia]
- MB
-
-
- "An image resolution unit which is a standard measure of the amount of spatial detail in an image." [Wikipedia:Wikipedia]
- chroma sampling unit
-
-
- "An image resolution unit which is a standard measure of the amount of contrast available in a pixel." [Wikipedia:Wikipedia]
- dynamic range unit
-
-
- dots per inch
- dpi
- "A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space." [Wikipedia:Wikipedia]
-
-
- "A spatial resolution unit which is equal to a pixel size of one micrometer." [Wikipedia:Wikipedia]
- micron pixel
- micrometer pixel
-
-
- pixel density
- "A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions." [Wikipedia:Wikipedia]
- pixels per inch
- ppi
-
-
- "A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image." [Wikipedia:Wikipedia]
- pixels per millimeter
- pixels per millimetre
-
-
- "A count unit which contains one nucleotide." [UO:GVG]
- bp
- base pair
- basepair
-
-
- kibibyte
- KiB
- "An information unit which is equal to 1024 B." [NIST:NIST]
-
-
- "An information unit which is equal to 1024 KiB." [NIST:NIST]
- mebibyte
- MiB
-
-
- millivolt
- mV
- "An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V." [UOC:GVG]
-
-
- "An electric potential difference unit which is equal to one thousand volts or 10^[3] V." [UOC:GVG]
- kV
- kilovolt
-
-
- microvolt
- uV
- "An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V." [UOC:GVG]
-
-
- "An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V." [UOC:GVG]
- nV
- nanovolt
-
-
- pV
- "An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V." [UOC:GVG]
- picovolt
-
-
- "An electric potential difference unit which is equal to one million volts or 10^[6] V." [UOC:GVG]
- megavolt
- MV
-
-
- "A surface tension unit which is equal to one newton per meter." [NIST:NIST]
- N/m
- newton per meter
- newton per metre
-
-
- dyn/cm
- "A surface tension unit which is equal to one dyne per centimeter." [Wikipedia:Wikipedia]
- dyne per cm
-
-
- pascal second
- "A viscosity unit which is equal to one pascale per second." [NIST:NIST]
- Pa s
-
-
- P
- poise
- dyne s/cm^2
- "A viscosity unit which is equal to one dyne second per square centimeter." [Wikipedia:Wikipedia]
-
-
- dB
- "A ratio unit which is an indicator of sound power per unit area." [techtarget:techtarget]
- decibel
-
-
- "A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human." [Wikipedia:Wikipedia]
- effective dose unit
-
-
- A V^-1
- mho
- "An electrical conduction unit which is equal to A/V." [NIST:NIST]
- siemens
- S
-
-
- "An heat conduction unit which is equal to one watt divided by meter kelvin." [NIST:NIST]
- watt per meter kelvin
- W/m K
- watt per metre kelvin
-
-
- electron volt
- eV
- "A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J." [Wikipedia:Wikipedia]
- electronvolt
-
-
- volt per metre
- volt per meter
- "The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_field]
- V/m
-
-
- absorbance unit
- "A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light." [Wikipedia:http\://en.wikipedia.org/wiki/Absorbance]
- AU
-
-
- microliters per minute
- uL/min
- microlitres per minute
- "A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute." [UOC:GVG]
-
-
- "A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth." [url:en.wiktionary.org/wiki/mmHg]
- millimeters of mercury
- mmHg
- millimetres of mercury
-
-
- "A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters." [UOC:GVG]
- milligram per litre
- milligram per liter
- mg/L
-
-
- "A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters." [UOC:GVG]
- ug/ml
- microgram per milliliter
- microgram per millilitre
-
-
- ng/ml
- nanogram per millilitre
- nanogram per milliliter
- "A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters." [UOC:GVG]
-
-
- "A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter." [UOC:GVG]
- milliunits per milliliter
- milliunits per millilitre
- mU/ml
-
-
- nM^-1 s^-1
- "A rate unit which is equal to one over one nanomolar second." [UOC:GVG]
- count per nanomolar second
-
-
- "A rate unit which is equal to one over one molar second." [UOC:GVG]
- count per molar second
- M^-1 s^-1
-
-
- "An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares." [UO:GVG]
- kilogram per hectare
-
-
- 1/nM
- "A rate unit which is equal to one over one nanomolar." [UO:GVG]
- count per nanomolar
- nM^-1
-
-
- 1/M
- count per molar
- "A rate unit which is equal to one over one molar." [UO:GVG]
- M^-1
-
-
- "A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters." [UOC:GVG]
- microgram per litre
- ug/L
- microgram per liter
-
-
- "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]
- milligram per kilogram
-
-
- "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per square meter of surface area of the recipient subject." [UO:PC]
- milligram per square meter
-
-
- "A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered over time to a recipient subject, expressed in terms of the size of the subject." [UO:PC]
- dosage unit
-
milligram per kilogram per day
"A dosage unit which is equal to 1 milligram per day of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]
-
- relative light unit
- "A derived unit which is a measure of relative light intensity, as typically measured by a luminometer, spectrophotometer, or fluorimeter in biological research applications." [UO:PC]
-
-
- "A relative light unit which is a measure of relative luminescence intensity." [UO:PC]
- relative luminescence unit
-
-
- relative fluorescence unit
- "A relative light unit which is a measure of relative fluorescence intensity." [UO:PC]
-
-
- mH
- "A frequency unit which is equal to one million hertz or 10^[6] V." [UOC:GVG]
- megaHertz
-
-
- cM
- "A unit used to express distances on a genetic map. In genetic mapping, distances between markers are determined by measuring the rate of meoitic recombination between them, which increases proportionately with the distance separating them. A cM is defined as the length of an interval in which there is a 1% probability of recombination. On the average, 1 cM is roughly equivalent to 1 megabase (Mb) of DNA, although this can vary widely due to hot and cold spots of recombination." [NCBI:http\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]
- centiMorgan
-
-
- centiRay
- cR
- "A unit of genetic map distance defined corresponding to an interval in which there is a 1% probability of X-irradiation induced breakage. To be completely specified, the unit must be qualified by the radiation in dosage in rads (e.g. cR8000), because this determines the actual breakage probability." [NCBI:http\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]
-
-
- "A unit equal to one million base pairs" [UOC:GVG]
- mega base pair
- Mb
- megabasepair
-
-
- "A unit equal to one billion base pairs." [UOC:GVG]
- gigabasepair
- giga base pair
- Gb
-
-
- square micrometer
- square micrometre
- "An area unit which is equal to an area enclosed by a square with sides each 1 micrometer long." [NIST:NIST]
-
-
- mS
- millisiemens
- "An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] siemens." [NIST:NIST]
-
-
- micromole per litre
- "A specific concentration unit which is equal to 1 micromole in a given volume of one thousandth of a cubic meter." [NIST:NIST]
-
-
- micromole per kilogram
- "A specific concentration unit which is equal to 1 micromole of a given substance per kilogram of solvent." [UOB:LKSR]
-
-
- mm/day
- millimeters per day
- "A speed/velocity unit which is equal to the speed of an object traveling 1 millimeter distance in one day." [UOB:LKSR]
-
-
- kilometre per hour
- km/h
- "A speed/velocity unit which is equal to the speed of an object traveling 1 kilometer distance in one hour." [NIST:NIST]
- kilometer per hour
-
-
- mmu
- mDa
- "A mass unit which is equal to 1/12 the mass of 12C" [Wikipedia:Wikipedia]
- milli unified atomic mass unit
- milli
- millidalton
-
-
- hectare
- HA
- "An area unit which is equal to an area of 10,000 square meters. Equivalent to 2.471 acres." [Wikipedia:Wikipedia]
-
-
- "A length unit which is equal to 0.0254 metres." [Wikipedia:Wikpiedia]
- inch
- in
-
-
- thou
- "A length unit which is equal to 0.0254 millimetres." [Wikipedia:Wikpiedia]
- mil
- th
-
-
- ft
- "A length unit which is equal to 0.3048 metres, or 12 inches." [Wikipedia:Wikpiedia]
- foot
-
-
- yard
- "A length unit which is equal to 0.9144 metres, or 3 feet." [Wikipedia:Wikpiedia]
- yd
-
-
- "A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards." [Wikipedia:Wikpiedia]
- ch
- chain
-
-
- "A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains." [Wikipedia:Wikpiedia]
- fur
- furlong
-
-
- "A length unit which is equal to 1,609.344 metres, or 8 furlongs." [Wikipedia:Wikpiedia]
- mi
- mile
-
-
- league
- lea
- "A length unit which is equal to 3 miles, or 4,828.032 metres" [Wikipedia:Wikpiedia]
-
-
- maritime length unit
- "A maritime length unit is one used primarily at sea." [Wikipedia:Wikpiedia]
-
-
- "A maritime length unit which is equal to 6.08 feet, or 1.853184 metres" [Wikipedia:Wikpiedia]
- ftm
- fathom
-
-
- "A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres" [Wikipedia:Wikpiedia]
- cable
-
-
- "A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,853.184 metres" [Wikipedia:Wikpiedia]
- nautical mile
-
-
- perch
- "An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod." [Wikipedia:Wikipedia]
-
-
- "An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,011.714,1056 square meters, or 40 square rods." [Wikipedia:Wikipedia]
- rood
-
-
- acre
- "An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,046.856,4224 square meters, or 43,500 square feet." [Wikipedia:Wikipedia]
-
-
- fluid ounce
- "An imperial volume unit which is equivalent to 28.413,0625 millilitres." [Wikipedia:Wikipedia]
- fl oz
-
-
- gill
- "An imperial volume unit which is equivalent to 142.065,3125 millilitres." [Wikipedia:Wikipedia]
- gi
-
-
- pint
- pt
- "An imperial volume unit which is equivalent to 568.261,25 millilitres." [Wikipedia:Wikipedia]
-
-
- quart
- qt
- "An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints." [Wikipedia:Wikipedia]
-
-
- gallon
- "An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints." [Wikipedia:Wikipedia]
- gal
-
-
- gr
- "An imperial mass unit which is equivalent to 64.798,91 milligrams." [Wikipedia:Wikipedia]
- grain
-
-
- drachm
- "An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound." [Wikipedia:Wikipedia]
- dr
-
-
- "An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound." [Wikipedia:Wikipedia]
- oz
- ounce
-
-
- lb
- pound
- "An imperial mass unit which is equivalent to 453.592,37 grams." [Wikipedia:Wikipedia]
-
-
- stone
- "An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds." [Wikipedia:Wikipedia]
- st
-
-
- qr
- "An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds." [Wikipedia:Wikipedia]
- qtr
- quarter
-
-
- hundredweight
- "An imperial mass unit which is equivalent to 50.802,345,44 kilograms, 112 pounds, or 8 stone." [Wikipedia:Wikipedia]
- cwt
-
-
- "An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds." [Wikipedia:Wikipedia]
- ton
- t
-
-
- slug
- "An imperial gravitational unit which is equivalent to a mass that accelerates by 1ft/s² when a force of one pound (lbf) is exerted on it." [Wikipedia:Wikipedia]
-
-
- "A metric teaspoon is a unit of measurement of volume widely used in cooking recipes and pharmaceutic prescriptions. It equals a 5mL volume." [Wikipedia:https://en.wikipedia.org/wiki/Teaspoon]
- teaspoon
- metric teaspoon
- tsp
-
-
- micromole
- "A substance unit which is equal to one millionth of a mole." [UOB:LTS]
- mmol
-
-
- gram per square metre
- gram per square meter
- "An area density unit which is equal to the mass of an object in grams divided by the surface area in meters squared." [NIST:NIST]
- g/m^[2]
-
-
- nanogram per microliter
- ng/ul
- "A mass unit density which is equal to mass of an object in nanograms divided by the volume in microliters." [UOB:LTS]
- nanogram per microlitre
-
-
- kilocalorie
- food calorie
- large calorie
- cal
- big calorie
- calorie
- "A unit of energy widely used in nutrition, equivalent to the amount of heat needed to cause one kilogram of water to rise in temperature by one degree Celsius." [Wikipedia:Wikipedia]
- kcal
-
-
- "A unit of mass concentration defined as the number of micrograms of a substance per 250 ml Wheaton bottle." [UOB:LTS]
- micrograms per bottle
- micrograms per wheaton bottle
-
-
- pA
- "An electric current unit current which is equal to one trillionth of an ampere or 10^[-12] A." [UOB:LTS]
- picoampere
-
-
- centigray
- cGy
- "An absorbed dose unit which is equal to 0.01 gray (Gy)"
-
-
- gigaelectronvolt
- GeV
- "A unit of energy that is equal to one thousand million electronvolts."
-
-
- gigaelectronvolt per nucleon
- GeV/nucleon
- "Derived unit which is equal to the total kinetic energy of an atomic nucleus in GeV divided by the number of nucleons in the nucleus"
-
-
- "Derived unit which is equal to the total kinetic energy of an atomic nucleus in MeV divided by the number of nucleons in the nucleus"
- megaelectronvolt per nucleon
- MeV/nucleon
-
-
- "A derived unit equal to the energy deposited by ionizing radiation per micron of path length in matter"
- kiloelectronvolt per micron
- keV/micron
-
-
- Gy/min
- gray per minute
- "A derived absorbed dose unit which is equal to one gray absorbed per minute."
-
-
- centigray per minute
- cGy/min
- "A derived absorbed dose unit which is equal to one centigray absorbed per minute."
-
-
- milligray per minute
- "A derived absorbed dose unit which is equal to one milligray absorbed per minute."
- mGy/min
-
-
- milligray per day
- mGy/min
- "A derived absorbed dose unit which is equal to one milligray absorbed per day."
-
diff --git a/src/ontology/srpdio-odk.yaml b/src/ontology/srpdio-odk.yaml
index ae4883f..808577d 100644
--- a/src/ontology/srpdio-odk.yaml
+++ b/src/ontology/srpdio-odk.yaml
@@ -63,8 +63,7 @@ import_pattern_ontology: false
license: CC-BY
namespaces: null
obo_format_options: ''
-pattern_group:
- directory: ../patterns/
+pattern_group: null
pattern_pipelines_group: null
primary_release: full
public_release: none
@@ -85,5 +84,5 @@ subset_group: null
title: Superfund Research Project Data Integration Ontology
travis_emails: null
uribase: http://purl.obolibrary.org/obo
-use_dosdps: true
+use_dosdps: false
use_external_date: false
diff --git a/srpdio-base.owl b/srpdio-base.owl
index d5a8cc4..0caac42 100644
--- a/srpdio-base.owl
+++ b/srpdio-base.owl
@@ -9,42 +9,13 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
- None
- Superfund Researc Project Data Integration Ontology
+
+ An ontology for use with the NIEHS Superfund Research Project.
+ Superfund Research Project Data Integration Ontology
-
- 2021-12-26
+
+ 2022-01-01
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
diff --git a/srpdio-full.owl b/srpdio-full.owl
index 41f0567..0446c81 100644
--- a/srpdio-full.owl
+++ b/srpdio-full.owl
@@ -10,9 +10,8 @@
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
+ xmlns:envo="http://purl.obolibrary.org/obo/envo#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
- xmlns:obo2="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/"
xmlns:pato="http://purl.obolibrary.org/obo/pato#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
@@ -21,18 +20,19 @@
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/"
+ xmlns:chebi2="http://purl.obolibrary.org/obo/chebi#2"
xmlns:chebi3="http://purl.obolibrary.org/obo/chebi#3"
xmlns:chebi4="http://purl.obolibrary.org/obo/chebi#1"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
+ xmlns:taxslim="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
- xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
xmlns:oboInOwl1="oboInOwl:">
-
- None
- Superfund Researc Project Data Integration Ontology
-
- 2021-12-26
+
+ An ontology for use with the NIEHS Superfund Research Project.
+ Superfund Research Project Data Integration Ontology
+
+ 2022-01-01
@@ -54,6 +54,18 @@
+
+
+
+
+
+
+
+
+
+
+
+
@@ -86,49 +98,13 @@
-
- definition
- definition
- textual definition
-
- The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
- 2012-04-05:
-Barry Smith
-
-The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
-
-Can you fix to something like:
-
-A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
-
-Alan Ruttenberg
-
-Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
-
-On the specifics of the proposed definition:
-
-We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
-
-Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
-
-We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
- PERSON:Daniel Schober
- GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
-
- definition
- definition
- textual definition
-
+
-
-
- editor note
-
+
@@ -150,12 +126,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
-
-
@@ -204,14 +174,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
- term replaced by
-
-
-
-
@@ -268,12 +230,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
-
-
@@ -404,6 +360,14 @@ We also have the outstanding issue of how to aim different definitions to differ
+
+
+
+
+
+
+
+
@@ -454,6 +418,14 @@ We also have the outstanding issue of how to aim different definitions to differ
+
+
+
+
+
+
+
+
@@ -574,17 +546,9 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
-
-
-
+
-
-
-
+
@@ -639,7 +603,6 @@ We also have the outstanding issue of how to aim different definitions to differ
- Term for angiosperms
@@ -648,7 +611,6 @@ We also have the outstanding issue of how to aim different definitions to differ
- Term used for Arabidopsis
@@ -657,7 +619,6 @@ We also have the outstanding issue of how to aim different definitions to differ
- Term used for mosses, liverworts, and/or hornworts
@@ -666,7 +627,6 @@ We also have the outstanding issue of how to aim different definitions to differ
- plant cells
@@ -688,19 +648,9 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
- Japanese synonym (exact)
-
-
-
-
- Term used for maize
@@ -714,18 +664,9 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
- Plural
-
-
-
-
- Term used for grasses
@@ -750,21 +691,11 @@ We also have the outstanding issue of how to aim different definitions to differ
- Term used for rice
-
-
-
-
- Spanish synonym (exact)
-
-
-
-
@@ -776,7 +707,6 @@ We also have the outstanding issue of how to aim different definitions to differ
- Plant Functional Traits
@@ -785,7 +715,6 @@ We also have the outstanding issue of how to aim different definitions to differ
- reference plant structure term
@@ -799,11 +728,9 @@ We also have the outstanding issue of how to aim different definitions to differ
-
+
-
-
-
+
@@ -813,59 +740,24 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
- Description may include but is not limited to: an abstract,
- table of contents, reference to a graphical representation
- of content or a free-text account of the content.
- An account of the content of the resource.
-
- Description
- Description
-
-
-
-
-
-
-
-
-
-
-
-
-
- Mark Miller
- 2018-05-11T13:47:29Z
-
-
-
-
-
-
-
-
-
-
@@ -876,9 +768,7 @@ We also have the outstanding issue of how to aim different definitions to differ
-
- subset_property
-
+
@@ -896,72 +786,49 @@ We also have the outstanding issue of how to aim different definitions to differ
-
- has_alternative_id
-
+
-
- has_broad_synonym
-
+
-
- database_cross_reference
-
+
-
-
- has_exact_synonym
-
+
-
- has_narrow_synonym
-
+
-
- has_obo_namespace
-
+
-
- has_related_synonym
-
-
-
-
-
-
-
+
-
- has_synonym_type
-
+
@@ -973,23 +840,13 @@ We also have the outstanding issue of how to aim different definitions to differ
-
- in_subset
-
-
-
-
-
-
-
+
-
- shorthand
-
+
@@ -999,24 +856,6 @@ We also have the outstanding issue of how to aim different definitions to differ
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
@@ -1143,7 +982,6 @@ A continuant cannot be part of an occurrent: use 'participates in'. An
BFO:0000050
external
plant_ontology
- plant_trait_ontology
quality
source
uberon
@@ -1199,7 +1037,6 @@ A continuant cannot have an occurrent as part: use 'participates in'.
BFO:0000051
external
plant_ontology
- plant_trait_ontology
quality
source
uberon
@@ -1370,16 +1207,11 @@ A continuant cannot have an occurrent as part: use 'participates in'.
occurs_in
unfolds in
unfolds_in
- BFO:0000066
- plant_trait_ontology
- occurs_in
- occurs_in
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
- occurs in
occurs in
@@ -1397,17 +1229,6 @@ A continuant cannot have an occurrent as part: use 'participates in'.
-
-
-
-
-
-
-
-
-
-
-
@@ -1524,6 +1345,7 @@ every c that is a concretization of g specifically denotes r
Alan Ruttenberg
PERSON:Bjoern Peters
+ is_specified_input_of
is_specified_input_of
@@ -1576,6 +1398,39 @@ every c that is a concretization of g specifically denotes r
+
+
+
+
+
+
+ achieves_planned_objective
+ A cell sorting process achieves the objective specification 'material separation objective'
+
+ This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
+ BP, AR, PPPB branch
+ PPPB branch derived
+ modified according to email thread from 1/23/09 in accordince with DT and PPPB branch
+ achieves_planned_objective
+
+
+
+
+
+
+
+
+
+ objective_achieved_by
+
+ This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
+ OBI
+ OBI
+ objective_achieved_by
+
+
+
+
@@ -1600,18 +1455,18 @@ every c that is a concretization of g specifically denotes r
inheres in
+ this fragility inheres in this vase
this fragility is a characteristic of this vase
+ this red color inheres in this apple
this red color is a characteristic of this apple
a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
+ a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
+ A dependent inheres in its bearer at all times for which the dependent exists.
inheres_in
- RO:0000052
- plant_trait_ontology
- inheres_in
- inheres_in
Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
characteristic of
- inheres in
+ inheres in
@@ -1625,6 +1480,7 @@ every c that is a concretization of g specifically denotes r
this apple is bearer of this red color
this vase is bearer of this fragility
Inverse of characteristic_of
+ a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
bearer_of
is bearer of
@@ -1635,6 +1491,7 @@ every c that is a concretization of g specifically denotes r
bearer_of
bearer_of
bearer of
+ bearer of
has characteristic
@@ -1871,54 +1728,15 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- is location of
- my head is the location of my brain
- this cage is the location of this rat
- a relation between two independent continuants, the location and the target, in which the target is entirely within the location
- Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
- location_of
-
- location of
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- contained in
-
-
-
-
-
-
-
- contains
+ this cell derives from this parent cell (cell division)
+ this nucleus derives from this parent nucleus (nuclear division)
+
+ a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
+ This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
+ derives_from
+ This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
+
+ derives from
@@ -1926,29 +1744,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
located in
my brain is located in my head
this rat is located in this cage
@@ -1958,27 +1753,9 @@ every c that is a concretization of g specifically denotes r
located_in
http://www.obofoundry.org/ro/#OBO_REL:located_in
- rwalls
- 2012-05-23T09:52:02Z
- RO:0001025
- plant_ontology
- located_in
- located_in
+
located in
- located_in
-
-
-
-
- This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.
-
-
-
-
-
- This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.
-
@@ -2057,17 +1834,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
-
- A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.
- has ligand
-
-
-
-
@@ -2130,7 +1896,6 @@ every c that is a concretization of g specifically denotes r
-
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
dos
@@ -2147,6 +1912,18 @@ every c that is a concretization of g specifically denotes r
+
+
+
+
+ David Osumi-Sutherland
+
+ Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
+ during which ends
+
+
+
+
@@ -2233,10 +2010,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
@@ -2271,15 +2044,6 @@ every c that is a concretization of g specifically denotes r
true
-
-
-
-
-
-
-
- true
-
@@ -2319,10 +2083,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
@@ -2337,8 +2097,17 @@ every c that is a concretization of g specifically denotes r
+
A is spatially_disjoint_from B if and only if they have no parts in common
+ There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
+ Chris Mungall
+
+ Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
+ BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
+
+
spatially disjoint from
+ https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern
@@ -2508,12 +2277,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
-
-
@@ -2551,10 +2314,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
Chris Mungall
has function in
@@ -2578,37 +2337,6 @@ every c that is a concretization of g specifically denotes r
true
-
-
-
-
-
-
-
- true
-
-
-
-
-
-
-
-
-
- x actively participates in y if and only if x participates in y and x realizes some active role
- actively participates in
-
-
-
-
-
-
-
-
- x has participant y if and only if x realizes some active role that inheres in y
- obsolete has active participant
- true
-
@@ -2616,7 +2344,12 @@ every c that is a concretization of g specifically denotes r
-
+
+ x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
+ Chris Mungall
+
+ surrounded by
+ surrounded by
@@ -2625,24 +2358,26 @@ every c that is a concretization of g specifically denotes r
-
-
+ A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
+ The epidermis layer of a vertebrate is adjacent to the dermis.
+ The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
+ The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
+
x adjacent to y if and only if x and y share a boundary.
- RO:0002220
- plant_ontology
- adjacent_to
- adjacent_to
+ This relation acts as a join point with BSPO
+ Chris Mungall
+
+
+
+
adjacent to
- adjacent_to
-
-
-
-
-
-
-
-
+
+
+
+ A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
+
+
@@ -2690,6 +2425,23 @@ every c that is a concretization of g specifically denotes r
+
+
+
+
+
+ p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.
+ Chris Mungall
+ produces
+
+
+
+
+ has output
+
+
+
+
@@ -2809,6 +2561,40 @@ every c that is a concretization of g specifically denotes r
+
+
+
+
+
+ p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
+ This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
+ Chris Mungall
+ results_in_developmental_progression_of
+ results in developmental progression of
+
+
+
+
+
+
+
+
+
+
+ an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
+ every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
+
+ Chris Mungall
+ GOC:mtg_berkeley_2013
+
+
+
+ results_in_formation_of
+ results in formation of
+
+
+
+
@@ -2855,22 +2641,22 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
+ q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.
Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
+ Because part_of is transitive, inheres in is a sub-relation of inheres in part of
Chris Mungall
inheres in part of
characteristic of part of
+ inheres in part of
+
@@ -2881,15 +2667,6 @@ every c that is a concretization of g specifically denotes r
true
-
-
-
-
-
-
-
- true
-
@@ -2904,14 +2681,7 @@ every c that is a concretization of g specifically denotes r
-
- A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
- Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
- Chris Mungall
- Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
-
- ecologically related to
-
+
@@ -2992,10 +2762,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
this relation holds between c and p when c is part of some c', and c' is capable of p.
Chris Mungall
false
@@ -3014,15 +2780,6 @@ every c that is a concretization of g specifically denotes r
true
-
-
-
-
-
-
-
- true
-
@@ -3030,7 +2787,6 @@ every c that is a concretization of g specifically denotes r
-
@@ -3055,11 +2811,6 @@ every c that is a concretization of g specifically denotes r
-
-
-
-
-
inverse of enables
Chris Mungall
@@ -3175,18 +2926,26 @@ every c that is a concretization of g specifically denotes r
-
+
-
-
-
-
-
-
-
-
- x spatially_coextensive_with y if and inly if x and y have the same location
- spatially coextensive with
+
+
+
+ inverse of has output
+ Chris Mungall
+
+
+ output of
+
+
+
+
+
+
+
+
+ Chris Mungall
+ formed as result of
@@ -3283,7 +3042,6 @@ every c that is a concretization of g specifically denotes r
-
This relation groups causal relations between material entities and causal relations between processes
This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
@@ -3479,10 +3237,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
-
-
-
A protein that enables activity in a cytosol.
c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
Chris Mungall
@@ -3500,20 +3254,11 @@ Each of these 3 primitives can be composed to yield a cross-product of different
true
-
-
-
-
-
-
-
- true
-
c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
- GOC:cjm
+ GOC:cjm
GOC:dos
@@ -3577,7 +3322,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
-
@@ -3586,7 +3330,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different
- Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
@@ -3594,7 +3337,6 @@ A and B can be physically interacting but not necessarily. Immediately upstream
Vasundra Touré
molecularly controls
- activity directly regulates activity of
directly regulates activity of
@@ -3611,14 +3353,12 @@ A and B can be physically interacting but not necessarily. Immediately upstream
- Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
Chris Mungall
Vasundra Touré
directly inhibits
molecularly decreases activity of
- activity directly negatively regulates activity of
directly negatively regulates activity of
@@ -3635,14 +3375,12 @@ For example, A and B may be gene products and binding of B by A negatively regul
- Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
Chris Mungall
Vasundra Touré
directly activates
molecularly increases activity of
- activity directly positively regulates activity of
directly positively regulates activity of
@@ -3663,6 +3401,13 @@ For example, A and B may be gene products and binding of B by A positively regul
+ 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
+ x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
+ Chris Mungall
+
+
+
+ composed primarily of
@@ -3676,10 +3421,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
Chris Mungall
@@ -3694,15 +3435,6 @@ For example, A and B may be gene products and binding of B by A positively regul
true
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- true
-
@@ -3761,16 +3493,13 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between entities
- causal relation between material entities
@@ -3781,17 +3510,16 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
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-
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-
-
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-
+ A coral reef environment is determined by a particular coral reef
+ s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.
+ The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future
+ Chris Mungall
+
+ determined by (system to material entity)
+ Chris Mungall
+ Pier Buttigieg
+
+ determined by
@@ -3801,22 +3529,11 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
+ s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.
+ Chris Mungall
+
+ determined by part of
-
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- true
-
@@ -3875,7 +3592,6 @@ For example, A and B may be gene products and binding of B by A positively regul
- Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b
The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
Chris Mungall
Vasundra Touré
@@ -3887,21 +3603,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
- A relation that holds between an attribute or a qualifier and another attribute.
- Chris Mungall
-
- This relation is intended to be used in combination with PATO, to be able to refine PATO quality classes using modifiers such as 'abnormal' and 'normal'. It has yet to be formally aligned into an ontological framework; it's not clear what the ontological status of the "modifiers" are.
-
- has modifier
-
-
-
-
@@ -4020,12 +3721,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
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@@ -4212,14 +3907,6 @@ For example, A and B may be gene products and binding of B by A positively regul
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@@ -4318,9 +4005,7 @@ For example, A and B may be gene products and binding of B by A positively regul
-
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-
+
@@ -4330,6 +4015,12 @@ For example, A and B may be gene products and binding of B by A positively regul
+
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+
@@ -4360,37 +4051,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
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@@ -4496,6 +4156,69 @@ For example, A and B may be gene products and binding of B by A positively regul
+
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+
+ sighting
+ A trip camera capture of an image of a jaguar is an observation, because it is "selected" by the camera as worthy of obsevation simply by virtue of moving in front of the camera.
+ Observing and recording the presence or absence of butterflies during a transect walk.
+ Seeing three pelicans flying overhead on Christmas day and report them as part of the Christmas Bird Count.
+
+ A process in which a person or machine sees or detects a material entity and selects it as worthy of observation, and which has as output an information content entity about the selected material entity.
+ This class replaces class bco_0000003, which was made obsolete because of identifier format.
+ We are having conversation with OBI developers about how this term relates to OBI:assay (). Is it equivalent, broader, narrower? What does it mean to be the input to an observation.
+ Biocode Commons Ontology Hackathon
+ An observing process is distinguished from a specimen collecting process in by having an information content entity as an output rather than a specimen. The information artifact may be written or recorded or just be stored in someone's head (specifically depenedent upon that person). In the context of a taxonomic inventory, an observing process may be called a sighting, which is an ad hoc reporting of, typically, a single taxon occurrence, usually motivated by rarity, individual interest in the taxon, or atypicality of circumstances.
+ observing process
+
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+
+ the role borne by a bird during a Christmas Bird Count
+
+ A role that is borne by some material entity and is realized by the material entity being the input of an observing process.
+ This term replaced bco_0000046, which was made obsolete because of incorrect identifier format.
+ Biocode Commons Ontology Hackathon
+ material target of observation role
+
+
+
+
@@ -4510,7 +4233,6 @@ For example, A and B may be gene products and binding of B by A positively regul
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
- entity
entity
@@ -4534,24 +4256,6 @@ For example, A and B may be gene products and binding of B by A positively regul
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@@ -4567,11 +4271,12 @@ For example, A and B may be gene products and binding of B by A positively regul
continuant
Continuant
- An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
+ continuant
An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
+
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
@@ -4581,7 +4286,6 @@ For example, A and B may be gene products and binding of B by A positively regul
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
- continuant
continuant
@@ -4645,18 +4349,6 @@ For example, A and B may be gene products and binding of B by A positively regul
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@@ -4671,7 +4363,6 @@ For example, A and B may be gene products and binding of B by A positively regul
occurrent
Occurrent
- An entity that has temporal parts and that happens, unfolds or develops through time.
An entity that has temporal parts and that happens, unfolds or develops through time.
BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
@@ -4684,7 +4375,6 @@ For example, A and B may be gene products and binding of B by A positively regul
(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
- occurrent
occurrent
@@ -4737,12 +4427,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
@@ -4763,9 +4447,7 @@ For example, A and B may be gene products and binding of B by A positively regul
an organism
the bottom right portion of a human torso
the interior of your mouth
- A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
- b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
@@ -4774,15 +4456,8 @@ For example, A and B may be gene products and binding of B by A positively regul
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
- independent continuant
independent continuant
-
-
-
- b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
- http://purl.obolibrary.org/obo/bfo/axiom/017-002
-
@@ -4822,25 +4497,11 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
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-
- spatial region
-
-
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+
+
process
Process
a process of cell-division, \ a beating of the heart
@@ -4850,9 +4511,7 @@ For example, A and B may be gene products and binding of B by A positively regul
the flight of a bird
the life of an organism
your process of aging.
- An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
- p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
@@ -4865,12 +4524,6 @@ For example, A and B may be gene products and binding of B by A positively regul
process
process
-
-
-
- p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
- http://purl.obolibrary.org/obo/bfo/axiom/083-003
-
@@ -4900,12 +4553,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
@@ -4920,17 +4567,40 @@ For example, A and B may be gene products and binding of B by A positively regul
the function of your reproductive organs
the role of being a doctor
the role of this boundary to delineate where Utah and Colorado meet
- A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
+ https://orcid.org/0000-0001-8815-0078
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
- realizable entity
realizable entity
+
+
+
+ To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
+
+
+
+
+
+ All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
+
+
+
+
+
+ (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
+
+
+
+
+
+ (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
+
+
@@ -4938,19 +4608,12 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
- quality
quality
@@ -4960,12 +4623,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
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-
@@ -4975,6 +4632,7 @@ For example, A and B may be gene products and binding of B by A positively regul
sdc
SpecificallyDependentContinuant
+ specifically dependent continuant
Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
of one-sided specifically dependent continuants: the mass of this tomato
of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
@@ -4986,25 +4644,22 @@ For example, A and B may be gene products and binding of B by A positively regul
the role of being a doctor
the shape of this hole.
the smell of this portion of mozzarella
- A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
- b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
- b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
+
(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
- specifically dependent continuant
specifically dependent continuant
- b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
- http://purl.obolibrary.org/obo/bfo/axiom/050-003
+ b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
+
@@ -5019,6 +4674,12 @@ For example, A and B may be gene products and binding of B by A positively regul
per discussion with Barry Smith
+
+
+
+ (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
+
+
@@ -5033,11 +4694,34 @@ For example, A and B may be gene products and binding of B by A positively regul
- A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
+ role
+ Role
+ John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
+ the priest role
+ the role of a boundary to demarcate two neighboring administrative territories
+ the role of a building in serving as a military target
+ the role of a stone in marking a property boundary
+ the role of subject in a clinical trial
+ the student role
A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
- role
+ BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
+ b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
+ (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
+
role
+
+
+
+ b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
+
+
+
+
+
+ (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
+
+
@@ -5045,8 +4729,8 @@ For example, A and B may be gene products and binding of B by A positively regul
- fiat object
- fiat object part
+ fiat object
+ fiat object part
@@ -5055,59 +4739,8 @@ For example, A and B may be gene products and binding of B by A positively regul
- object-aggregate
- ObjectAggregate
- a collection of cells in a blood biobank.
- a swarm of bees is an aggregate of members who are linked together through natural bonds
- a symphony orchestra
- an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
- defined by fiat: the aggregate of members of an organization
- defined through physical attachment: the aggregate of atoms in a lump of granite
- defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
- defined via attributive delimitations such as: the patients in this hospital
- the aggregate of bearings in a constant velocity axle joint
- the aggregate of blood cells in your body
- the nitrogen atoms in the atmosphere
- the restaurants in Palo Alto
- your collection of Meissen ceramic plates.
- An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
- BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
- ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
- b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
- (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
-
object aggregate
-
-
-
- An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
-
-
-
-
-
- An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
-
-
-
-
-
- ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
-
-
-
-
-
- b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
-
-
-
-
-
- (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
-
-
@@ -5115,7 +4748,7 @@ For example, A and B may be gene products and binding of B by A positively regul
- object
+ object
@@ -5170,15 +4803,9 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
-
material
MaterialEntity
+ material entity
a flame
a forest fire
a human being
@@ -5191,7 +4818,6 @@ For example, A and B may be gene products and binding of B by A positively regul
an energy wave
an epidemic
the undetached arm of a human being
- An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
@@ -5206,7 +4832,6 @@ For example, A and B may be gene products and binding of B by A positively regul
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
- material entity
material entity
@@ -5248,21 +4873,6 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
-
-
-
-
- immaterial entity
-
-
-
-
@@ -5324,7 +4934,7 @@ For example, A and B may be gene products and binding of B by A positively regul
PMID:21614077
- Europe PMC
+ Europe PMC
@@ -5398,7 +5008,41 @@ For example, A and B may be gene products and binding of B by A positively regul
-
+
+
+ chebi_ontology
+ CHEBI:131925
+
+ elemental tungsten
+
+
+
+
+
+
+
+
+ An atom of an element that exhibits properties that are between those of metals and nonmetals, or that has a mixture of them. The term generally includes boron, silicon, germanium, arsenic, antimony, and tellurium, while carbon, aluminium, selenium, polonium, and astatine are less commonly included.
+ Wikipedia:Metalloid
+ chebi_ontology
+ metalloid
+ metalloids
+ CHEBI:137980
+
+ metalloid atom
+
+
+
+
+ metalloid
+ ChEBI
+
+
+
+
+ metalloids
+ ChEBI
+
@@ -5442,9 +5086,13 @@ For example, A and B may be gene products and binding of B by A positively regul
Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
+ Wikipedia:https://en.wikipedia.org/wiki/Gas
+ chebi_ontology
gas molecular entities
gaseous molecular entities
gaseous molecular entity
+ CHEBI:138675
+
gas molecular entity
@@ -5468,62 +5116,12 @@ For example, A and B may be gene products and binding of B by A positively regul
-
+
-
-
- A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.
- Acceptor
- acceptor
- A
- Akzeptor
- Hydrogen-acceptor
- Oxidized donor
- accepteur
- acceptor
-
-
-
-
- Acceptor
- KEGG_COMPOUND
-
-
-
-
- acceptor
- UniProt
-
-
-
-
- A
- KEGG_COMPOUND
-
-
-
-
- Akzeptor
- ChEBI
-
-
-
-
- Hydrogen-acceptor
- KEGG_COMPOUND
-
-
-
-
- Oxidized donor
- KEGG_COMPOUND
-
-
-
-
- accepteur
- ChEBI
-
+
+
+ electron donor
+
@@ -5533,35831 +5131,36916 @@ For example, A and B may be gene products and binding of B by A positively regul
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms.
- WATER
- Water
- oxidane
- water
- BOUND WATER
- H2O
- HOH
- Wasser
- [OH2]
- acqua
- agua
- aqua
- dihydridooxygen
- dihydrogen oxide
- eau
- hydrogen hydroxide
water
-
-
-
- WATER
- PDBeChem
-
-
-
-
- Water
- KEGG_COMPOUND
-
-
-
-
- oxidane
- IUPAC
-
-
-
-
-
- water
- IUPAC
-
-
-
-
-
- BOUND WATER
- PDBeChem
-
-
-
-
- H2O
- KEGG_COMPOUND
-
-
-
-
- H2O
- UniProt
-
-
-
-
- HOH
- ChEBI
-
-
-
-
- Wasser
- ChEBI
-
-
-
-
- [OH2]
- IUPAC
-
-
-
-
- acqua
- ChEBI
-
-
-
-
- agua
- ChEBI
-
-
-
-
- aqua
- ChEBI
-
-
-
-
- dihydridooxygen
- IUPAC
-
-
-
-
- dihydrogen oxide
- IUPAC
-
-
-
-
- eau
- ChEBI
-
-
-
-
- hydrogen hydroxide
- ChEBI
-
+
+
+
+
+
+
+
+
+
+ dioxygen
+
-
+
+
+ An element in the cobalt group of the periodic table with atomic number 27, atomic mass 58.933, M.P. 1495 C, and B.P. 2927 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Cobalt
+ chebi_ontology
+ CHEBI:155865
+
+ elemental cobalt
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Cobalt
+ SUBMITTER
+
-
+
+
+ An element in the chromium group of the periodic table with atomic number 24, atomic mass 51.996, M.P. 1907 C, and B.P. 2671 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Chromium
+ chebi_ontology
+ CHEBI:155866
+
+ elemental chromium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Chromium
+ SUBMITTER
+
-
+
+
+ An element in the hydrogen group of the periodic table with atomic number 3, atomic mass 6.94, M.P. 180.50 C, and B.P. 1330 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Lithium
+ chebi_ontology
+ CHEBI:155867
+
+ elemental lithium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Lithium
+ SUBMITTER
+
-
+
+
+ An element in the nickel group of the periodic table with atomic number 28, atomic mass 58.69, M.P. 1455 C, and B.P. 2730 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Nickel
+ chebi_ontology
+ CHEBI:155868
+
+ elemental nickel
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Nickel
+ SUBMITTER
+
-
+
+
+ An element in the scandium group of the periodic table with atomic number 21, atomic mass 44.956, M.P. 1541 C, and B.P. 2836 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Scandium
+ chebi_ontology
+ CHEBI:155869
+
+ elemental scandium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Scandium
+ SUBMITTER
+
-
+
+
+ An element in the titanium group of the periodic table with atomic number 22, atomic mass 47.867, M.P. 1668 C, and B.P. 3287 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Titanium
+ chebi_ontology
+ CHEBI:155870
+
+ elemental titanium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Titanium
+ SUBMITTER
+
-
+
+
+ An element in the hydrogen group of the periodic table with atomic number 55, atomic mass 132.9055, M.P. 28.5 C, and B.P. 671 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Caesium
+ chebi_ontology
+ elemental cesium
+ CHEBI:155919
+
+ elemental caesium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Caesium
+ SUBMITTER
+
+
+
+
+ elemental cesium
+ SUBMITTER
+
-
+
+
+ An element in the boron group of the periodic table with atomic number 31, atomic mass 69.723, M.P. 29.7646 C, and B.P. 2400 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Gallium
+ chebi_ontology
+ CHEBI:155920
+
+ elemental gallium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Gallium
+ SUBMITTER
+
-
+
+
+ An element in the scandium group of the periodic table with atomic number 57, atomic mass 138.91, M.P. 920 C, and B.P. 3464 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Lanthanum
+ chebi_ontology
+ CHEBI:155921
+
+ elemental lanthanum
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Lanthanum
+ SUBMITTER
+
-
+
+
+ An element in the vanadium group of the periodic table with atomic number 41, atomic mass 92.906, M.P. 2477 C, and B.P. 4744 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Niobium
+ chebi_ontology
+ CHEBI:155922
+
+ elemental niobium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Niobium
+ SUBMITTER
+
-
+
+
+ An element in the hydrogen group of the periodic table with atomic number 37, atomic mass 85.468, M.P. 39.30 C, and B.P. 688 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Rubidium
+ chebi_ontology
+ CHEBI:155923
+
+ elemental rubidium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Rubidium
+ SUBMITTER
+
-
+
+
+ An element in the cerium group of the periodic table with atomic number 90, atomic mass 232.04, M.P. 1750 C, and B.P. 4788 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Thorium
+ chebi_ontology
+ CHEBI:155924
+
+ elemental thorium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Thorium
+ SUBMITTER
+
-
+
+
+ An element in the scandium group of the periodic table with atomic number 39, atomic mass 88.906, M.P. 1526 C, and B.P. 2930 C.
+ Wikipedia:https://en.wikipedia.org/wiki/Yttrium
+ chebi_ontology
+ CHEBI:155925
+
+ elemental yttrium
+
+
+
+
+ Wikipedia:https://en.wikipedia.org/wiki/Yttrium
+ SUBMITTER
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
-
+
- hydridooxygenate(1-)
- hydroxide
- oxidanide
- HO-
- HYDROXIDE ION
- Hydroxide ion
- OH(-)
- OH-
- hydroxide
+ -1
+ Br
+ InChI=1S/BrH/h1H/p-1
+ CPELXLSAUQHCOX-UHFFFAOYSA-M
+ 79.90400
+ 78.91889
+ [Br-]
+ CHEBI:13918
+ CHEBI:3178
+ CHEBI:49515
+ Beilstein:3587179
+ CAS:24959-67-9
+ Gmelin:14908
+ KEGG:C00720
+ KEGG:C01324
+ PDBeChem:BR
+ Bromide
+ bromide
+ bromide(1-)
+ chebi_ontology
+ BROMIDE ION
+ Br(-)
+ Br-
+ bromine anion
+ CHEBI:15858
+
+ bromide
-
-
- hydridooxygenate(1-)
- IUPAC
-
+
+
+ Beilstein:3587179
+ Beilstein
+
+
+
+
+ CAS:24959-67-9
+ ChemIDplus
+
+
+
+
+ CAS:24959-67-9
+ KEGG COMPOUND
+
+
+
+
+ CAS:24959-67-9
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:14908
+ Gmelin
-
+
- hydroxide
- IUPAC
-
+ Bromide
+ KEGG_COMPOUND
-
+
- oxidanide
+ bromide
IUPAC
-
-
- HO-
- KEGG_COMPOUND
+
+
+ bromide
+ UniProt
-
-
- HYDROXIDE ION
- PDBeChem
+
+
+ bromide(1-)
+ IUPAC
+
-
+
- Hydroxide ion
- KEGG_COMPOUND
+ BROMIDE ION
+ PDBeChem
-
+
- OH(-)
+ Br(-)
IUPAC
-
+
- OH(-)
- UniProt
+ Br-
+ KEGG_COMPOUND
-
+
- OH-
- KEGG_COMPOUND
+ bromine anion
+ NIST_Chemistry_WebBook
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
-
-
- A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
- CHEBI:14202
- CHEBI:4697
- KEGG:C01351
- Donor
- donor
+
+
+
+ A monoatomic monoanion resulting from the addition of an electron to any halogen atom.
+ -1
+ X
+ 0.0
+ 0.0
+ [*-]
+ CHEBI:14384
+ CHEBI:5605
+ KEGG:C00462
+ halide ions
chebi_ontology
- Donator
- donneur
- CHEBI:17891
+ HX
+ Halide
+ a halide anion
+ halide anions
+ halide(1-)
+ halides
+ halogen anion
+ CHEBI:16042
- donor
+ halide anion
-
+
- Donor
+ halide ions
+ IUPAC
+
+
+
+
+
+ HX
KEGG_COMPOUND
-
-
- donor
+
+
+ Halide
+ KEGG_COMPOUND
+
+
+
+
+ a halide anion
UniProt
-
+
- Donator
+ halide anions
ChEBI
-
+
- donneur
+ halide(1-)
+ ChEBI
+
+
+
+
+ halides
+ ChEBI
+
+
+
+
+ halogen anion
ChEBI
-
-
-
-
-
-
-
+
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-
+
- A phosphate ion that is the conjugate base of hydrogenphosphate.
- -3
- O4P
- InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
- NBIIXXVUZAFLBC-UHFFFAOYSA-K
- 94.97136
- 94.95507
- [O-]P([O-])([O-])=O
- CHEBI:14791
- CHEBI:45024
- CHEBI:7793
- Beilstein:3903772
- CAS:14265-44-2
- Gmelin:1997
- KEGG:C00009
- PDBeChem:PO4
- Reaxys:3903772
- phosphate
- tetraoxidophosphate(3-)
- tetraoxophosphate(3-)
- tetraoxophosphate(V)
+ An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms.
+ 0
+ H3N
+ InChI=1S/H3N/h1H3
+ QGZKDVFQNNGYKY-UHFFFAOYSA-N
+ 17.03056
+ 17.02655
+ [H]N([H])[H]
+ CHEBI:13405
+ CHEBI:13406
+ CHEBI:13407
+ CHEBI:13771
+ CHEBI:22533
+ CHEBI:44269
+ CHEBI:44284
+ CHEBI:44404
+ CHEBI:7434
+ Beilstein:3587154
+ CAS:7664-41-7
+ Drug_Central:4625
+ Gmelin:79
+ HMDB:HMDB0000051
+ KEGG:C00014
+ KEGG:D02916
+ KNApSAcK:C00007267
+ MetaCyc:AMMONIA
+ MolBase:930
+ PDBeChem:NH3
+ PMID:110589
+ PMID:11139349
+ PMID:11540049
+ PMID:11746427
+ PMID:11783653
+ PMID:13753780
+ PMID:14663195
+ PMID:15092448
+ PMID:15094021
+ PMID:15554424
+ PMID:15969015
+ PMID:16008360
+ PMID:16050680
+ PMID:16348008
+ PMID:16349403
+ PMID:16614889
+ PMID:16664306
+ PMID:16842901
+ PMID:17025297
+ PMID:17439666
+ PMID:17569513
+ PMID:17737668
+ PMID:18670398
+ PMID:22002069
+ PMID:22081570
+ PMID:22088435
+ PMID:22100291
+ PMID:22130175
+ PMID:22150211
+ PMID:22240068
+ PMID:22290316
+ PMID:22342082
+ PMID:22385337
+ PMID:22443779
+ PMID:22560242
+ Reaxys:3587154
+ Wikipedia:Ammonia
+ AMMONIA
+ Ammonia
+ ammonia
+ azane
chebi_ontology
- Orthophosphate
- PHOSPHATE ION
- PO4(3-)
- Phosphate
- [PO4](3-)
- CHEBI:18367
+ Ammoniak
+ NH3
+ R-717
+ [NH3]
+ ammoniac
+ amoniaco
+ spirit of hartshorn
+ CHEBI:16134
- phosphate(3-)
+ ammonia
-
+
- Beilstein:3903772
- Beilstein
+ Beilstein:3587154
+ Beilstein
-
+
- CAS:14265-44-2
- ChemIDplus
+ CAS:7664-41-7
+ ChemIDplus
-
+
- CAS:14265-44-2
- KEGG COMPOUND
+ CAS:7664-41-7
+ KEGG COMPOUND
-
+
- Gmelin:1997
- Gmelin
+ CAS:7664-41-7
+ NIST Chemistry WebBook
-
+
- PDBeChem:PO4
- ChEBI
+ Drug_Central:4625
+ DrugCentral
-
+
- Reaxys:3903772
- Reaxys
+ Gmelin:79
+ Gmelin
-
-
- phosphate
- IUPAC
-
+
+
+ PMID:110589
+ Europe PMC
-
-
- tetraoxidophosphate(3-)
- IUPAC
-
+
+
+ PMID:11139349
+ Europe PMC
-
-
- tetraoxophosphate(3-)
- IUPAC
-
+
+
+ PMID:11540049
+ Europe PMC
-
-
- tetraoxophosphate(V)
- IUPAC
-
+
+
+ PMID:11746427
+ Europe PMC
-
-
- Orthophosphate
- KEGG_COMPOUND
+
+
+ PMID:11783653
+ Europe PMC
-
-
- PHOSPHATE ION
- PDBeChem
+
+
+ PMID:13753780
+ Europe PMC
-
-
- PO4(3-)
- IUPAC
+
+
+ PMID:14663195
+ Europe PMC
-
-
- Phosphate
+
+
+ PMID:15092448
+ Europe PMC
+
+
+
+
+ PMID:15094021
+ Europe PMC
+
+
+
+
+ PMID:15554424
+ Europe PMC
+
+
+
+
+ PMID:15969015
+ Europe PMC
+
+
+
+
+ PMID:16008360
+ Europe PMC
+
+
+
+
+ PMID:16050680
+ Europe PMC
+
+
+
+
+ PMID:16348008
+ Europe PMC
+
+
+
+
+ PMID:16349403
+ Europe PMC
+
+
+
+
+ PMID:16614889
+ Europe PMC
+
+
+
+
+ PMID:16664306
+ Europe PMC
+
+
+
+
+ PMID:16842901
+ Europe PMC
+
+
+
+
+ PMID:17025297
+ Europe PMC
+
+
+
+
+ PMID:17439666
+ Europe PMC
+
+
+
+
+ PMID:17569513
+ Europe PMC
+
+
+
+
+ PMID:17737668
+ Europe PMC
+
+
+
+
+ PMID:18670398
+ Europe PMC
+
+
+
+
+ PMID:22002069
+ Europe PMC
+
+
+
+
+ PMID:22081570
+ Europe PMC
+
+
+
+
+ PMID:22088435
+ Europe PMC
+
+
+
+
+ PMID:22100291
+ Europe PMC
+
+
+
+
+ PMID:22130175
+ Europe PMC
+
+
+
+
+ PMID:22150211
+ Europe PMC
+
+
+
+
+ PMID:22240068
+ Europe PMC
+
+
+
+
+ PMID:22290316
+ Europe PMC
+
+
+
+
+ PMID:22342082
+ Europe PMC
+
+
+
+
+ PMID:22385337
+ Europe PMC
+
+
+
+
+ PMID:22443779
+ Europe PMC
+
+
+
+
+ PMID:22560242
+ Europe PMC
+
+
+
+
+ Reaxys:3587154
+ Reaxys
+
+
+
+
+ AMMONIA
+ PDBeChem
+
+
+
+
+ Ammonia
KEGG_COMPOUND
-
-
- [PO4](3-)
+
+
+ ammonia
IUPAC
+
-
-
-
-
-
-
-
-
-
- alkali metals
- Alkalimetall
- Alkalimetalle
- alkali metal
- metal alcalin
- metal alcalino
- metales alcalinos
- metaux alcalins
- alkali metal atom
-
-
+
- alkali metals
+ azane
IUPAC
-
+
- Alkalimetall
- ChEBI
+ Ammoniak
+ ChemIDplus
-
+
- Alkalimetalle
- ChEBI
+ NH3
+ IUPAC
-
+
- alkali metal
- ChEBI
+ NH3
+ KEGG_COMPOUND
-
+
- metal alcalin
- ChEBI
+ NH3
+ UniProt
-
+
- metal alcalino
+ R-717
ChEBI
-
+
- metales alcalinos
+ [NH3]
+ MolBase
+
+
+
+
+ ammoniac
ChEBI
-
+
- metaux alcalins
+ amoniaco
ChEBI
+
+
+
+ spirit of hartshorn
+ ChemIDplus
+
-
+
-
-
- A monoatomic or polyatomic species having one or more elementary charges of the electron.
- Anion
- anion
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid.
+ -2
+ O4S
+ InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
+ QAOWNCQODCNURD-UHFFFAOYSA-L
+ 96.06360
+ 95.95283
+ [O-]S([O-])(=O)=O
+ CHEBI:15135
+ CHEBI:45687
+ CHEBI:9335
+ Beilstein:3648446
+ CAS:14808-79-8
+ Gmelin:2120
+ HMDB:HMDB0001448
+ KEGG:C00059
+ KEGG:D05963
+ MetaCyc:SULFATE
+ PDBeChem:SO4
+ PMID:11200094
+ PMID:11452993
+ PMID:11581495
+ PMID:11798107
+ PMID:12166931
+ PMID:12668033
+ PMID:14597181
+ PMID:15093386
+ PMID:15984785
+ PMID:16186560
+ PMID:16345535
+ PMID:16347366
+ PMID:16348007
+ PMID:16483812
+ PMID:16534979
+ PMID:16656509
+ PMID:16742508
+ PMID:16742518
+ PMID:17120760
+ PMID:17420092
+ PMID:17439666
+ PMID:17709180
+ PMID:18398178
+ PMID:18815700
+ PMID:18846414
+ PMID:19047345
+ PMID:19244483
+ PMID:19544990
+ PMID:19628332
+ PMID:19812358
+ PMID:30398859
+ Reaxys:3648446
+ Wikipedia:Sulfate
+ Sulfate
+ sulfate
+ tetraoxidosulfate(2-)
+ tetraoxosulfate(2-)
+ tetraoxosulfate(VI)
chebi_ontology
- Anionen
- aniones
- anions
- CHEBI:22563
+ SO4(2-)
+ SULFATE ION
+ Sulfate anion(2-)
+ Sulfate dianion
+ Sulfate(2-)
+ Sulfuric acid ion(2-)
+ [SO4](2-)
+ sulphate
+ sulphate ion
+ CHEBI:16189
- anion
+ sulfate
-
+
+
+ Beilstein:3648446
+ Beilstein
+
+
+
+
+ CAS:14808-79-8
+ ChemIDplus
+
+
+
+
+ CAS:14808-79-8
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:2120
+ Gmelin
+
+
+
+
+ PMID:11200094
+ Europe PMC
+
+
+
+
+ PMID:11452993
+ Europe PMC
+
+
+
+
+ PMID:11581495
+ Europe PMC
+
+
+
+
+ PMID:11798107
+ Europe PMC
+
+
+
+
+ PMID:12166931
+ Europe PMC
+
+
+
+
+ PMID:12668033
+ Europe PMC
+
+
+
+
+ PMID:14597181
+ Europe PMC
+
+
+
+
+ PMID:15093386
+ Europe PMC
+
+
+
+
+ PMID:15984785
+ Europe PMC
+
+
+
+
+ PMID:16186560
+ Europe PMC
+
+
+
+
+ PMID:16345535
+ Europe PMC
+
+
+
+
+ PMID:16347366
+ Europe PMC
+
+
+
+
+ PMID:16348007
+ Europe PMC
+
+
+
+
+ PMID:16483812
+ Europe PMC
+
+
+
+
+ PMID:16534979
+ Europe PMC
+
+
+
+
+ PMID:16656509
+ Europe PMC
+
+
+
+
+ PMID:16742508
+ Europe PMC
+
+
+
+
+ PMID:16742518
+ Europe PMC
+
+
+
+
+ PMID:17120760
+ Europe PMC
+
+
+
+
+ PMID:17420092
+ Europe PMC
+
+
+
+
+ PMID:17439666
+ Europe PMC
+
+
+
+
+ PMID:17709180
+ Europe PMC
+
+
+
+
+ PMID:18398178
+ Europe PMC
+
+
+
+
+ PMID:18815700
+ Europe PMC
+
+
+
+
+ PMID:18846414
+ Europe PMC
+
+
+
+
+ PMID:19047345
+ Europe PMC
+
+
+
+
+ PMID:19244483
+ Europe PMC
+
+
+
+
+ PMID:19544990
+ Europe PMC
+
+
+
+
+ PMID:19628332
+ Europe PMC
+
+
+
+
+ PMID:19812358
+ Europe PMC
+
+
+
+
+ PMID:30398859
+ Europe PMC
+
+
+
+
+ Reaxys:3648446
+ Reaxys
+
+
+
- Anion
- ChEBI
+ Sulfate
+ KEGG_COMPOUND
-
+
- anion
- ChEBI
+ sulfate
+ IUPAC
+
-
+
- anion
+ sulfate
+ UniProt
+
+
+
+
+ tetraoxidosulfate(2-)
IUPAC
-
-
- Anionen
- ChEBI
+
+
+ tetraoxosulfate(2-)
+ IUPAC
+
-
-
- aniones
- ChEBI
+
+
+ tetraoxosulfate(VI)
+ IUPAC
+
-
+
- anions
+ SO4(2-)
IUPAC
-
-
-
-
-
-
-
- A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
- Base
- base
- Base1
- Base2
- Basen
- Nucleobase
- bases
- base
-
-
-
- Base
- ChEBI
+
+
+ SULFATE ION
+ PDBeChem
-
-
- base
- ChEBI
+
+
+ Sulfate anion(2-)
+ HMDB
-
-
- base
- IUPAC
-
+
+
+ Sulfate dianion
+ HMDB
-
+
- Base1
- KEGG_COMPOUND
+ Sulfate(2-)
+ HMDB
-
+
- Base2
- KEGG_COMPOUND
+ Sulfuric acid ion(2-)
+ HMDB
-
+
- Basen
- ChEBI
+ [SO4](2-)
+ IUPAC
-
+
- Nucleobase
- KEGG_COMPOUND
+ sulphate
+ ChEBI
-
+
- bases
+ sulphate ion
ChEBI
-
+
-
-
+
+
+
+
-
+
- chlorine
- 17Cl
- Chlor
- Cl
- chlore
- chlorine
- chlorum
- cloro
- chlorine atom
+
+
+
+
+
+
+ The nitrogen oxoanion formed by loss of a proton from nitrous acid.
+ -1
+ NO2
+ InChI=1S/HNO2/c2-1-3/h(H,2,3)/p-1
+ IOVCWXUNBOPUCH-UHFFFAOYSA-M
+ 46.00554
+ 45.99345
+ [O-]N=O
+ CHEBI:14658
+ CHEBI:44396
+ CHEBI:7585
+ CAS:14797-65-0
+ Gmelin:977
+ KEGG:C00088
+ PDBeChem:NO2
+ Wikipedia:Nitrite
+ Nitrite
+ dioxidonitrate(1-)
+ dioxonitrate(1-)
+ dioxonitrate(III)
+ nitrite
+ chebi_ontology
+ NITRITE ION
+ NO2
+ NO2(-)
+ Nitrit
+ [NO2](-)
+ nitrite anion
+ nitrite(1-)
+ nitrous acid, ion(1-)
+ CHEBI:16301
+
+ nitrite
-
+
+
+ CAS:14797-65-0
+ ChemIDplus
+
+
+
+
+ CAS:14797-65-0
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:977
+ Gmelin
+
+
+
- chlorine
+ Nitrite
+ KEGG_COMPOUND
+
+
+
+
+ dioxidonitrate(1-)
IUPAC
-
-
- 17Cl
+
+
+ dioxonitrate(1-)
IUPAC
+
-
+
+
+ dioxonitrate(III)
+ IUPAC
+
+
+
+
+
+ nitrite
+ IUPAC
+
+
+
+
+
+ nitrite
+ UniProt
+
+
+
- Chlor
+ NITRITE ION
+ PDBeChem
+
+
+
+
+ NO2
ChEBI
-
+
- Cl
+ NO2(-)
IUPAC
-
+
- chlore
+ Nitrit
ChEBI
-
+
- chlorine
- ChEBI
+ [NO2](-)
+ IUPAC
-
+
- chlorum
- ChEBI
+ nitrite anion
+ ChemIDplus
-
+
- cloro
- ChEBI
+ nitrite(1-)
+ ChemIDplus
+
+
+
+
+ nitrous acid, ion(1-)
+ ChemIDplus
-
+
-
-
-
-
-
-
-
-
- A halogen molecular entity containing one or more atoms of chlorine.
- chlorine molecular entity
+
+
+
+
+ carbon dioxide
-
+
-
-
- An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
- Wikipedia:Cofactor_(biochemistry)
- cofactor
- cofactors
+
+
+
+
+
+
+
+
+
+ -1
+ F
+ InChI=1S/FH/h1H/p-1
+ KRHYYFGTRYWZRS-UHFFFAOYSA-M
+ 18.99840
+ 18.99895
+ [F-]
+ CHEBI:14271
+ CHEBI:49593
+ CHEBI:5113
+ CAS:16984-48-8
+ Gmelin:14905
+ KEGG:C00742
+ PDBeChem:F
+ Fluoride
+ fluoride
+ fluoride(1-)
chebi_ontology
- CHEBI:23357
+ F(-)
+ F-
+ FLUORIDE ION
+ Fluoride ion
+ Fluorine anion
+ CHEBI:17051
- cofactor
+ fluoride
-
+
+
+ CAS:16984-48-8
+ ChemIDplus
+
+
+
+
+ CAS:16984-48-8
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:14905
+ Gmelin
+
+
+
- cofactor
- IUPAC
+ Fluoride
+ KEGG_COMPOUND
-
+
- cofactors
+ fluoride
IUPAC
-
-
-
-
-
-
-
- Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
- molecular entity
- chebi_ontology
- entidad molecular
- entidades moleculares
- entite moleculaire
- molecular entities
- molekulare Entitaet
- CHEBI:23367
-
- molecular entity
-
-
+
- molecular entity
+ fluoride
+ UniProt
+
+
+
+
+ fluoride(1-)
IUPAC
-
+
- entidad molecular
+ F(-)
IUPAC
-
+
- entidades moleculares
- IUPAC
+ F-
+ KEGG_COMPOUND
-
+
- entite moleculaire
- IUPAC
+ FLUORIDE ION
+ PDBeChem
-
+
- molecular entities
- IUPAC
+ Fluoride ion
+ KEGG_COMPOUND
-
+
- molekulare Entitaet
- ChEBI
+ Fluorine anion
+ NIST_Chemistry_WebBook
-
+
-
-
- A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
- chemical entity
+
+
+
+
+
+
+
+
+
+
+ A nitrogen oxoanion formed by loss of a proton from nitric acid. Principal species present at pH 7.3.
+ -1
+ NO3
+ InChI=1S/NO3/c2-1(3)4/q-1
+ NHNBFGGVMKEFGY-UHFFFAOYSA-N
+ 62.00490
+ 61.98837
+ [O-][N+]([O-])=O
+ CHEBI:14654
+ CHEBI:44487
+ CHEBI:71263
+ Beilstein:3587575
+ CAS:14797-55-8
+ Gmelin:1574
+ MetaCyc:NITRATE
+ PDBeChem:NO3
+ Wikipedia:Nitrate
+ nitrate
+ trioxidonitrate(1-)
+ trioxonitrate(1-)
+ trioxonitrate(V)
chebi_ontology
- CHEBI:24431
+ NITRATE ION
+ NO3
+ NO3(-)
+ [NO3](-)
+ nitrate(1-)
+ CHEBI:17632
- chemical entity
+ nitrate
-
+
+
+ Beilstein:3587575
+ Beilstein
+
+
+
+
+ CAS:14797-55-8
+ ChemIDplus
+
+
+
+
+ CAS:14797-55-8
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:1574
+ Gmelin
+
+
+
+
+ MetaCyc:NITRATE
+ SUBMITTER
+
+
+
- chemical entity
+ nitrate
+ IUPAC
+
+
+
+
+
+ nitrate
UniProt
-
-
-
-
-
-
-
-
- A role played by the molecular entity or part thereof within a biological context.
- chebi_ontology
- biological function
- CHEBI:24432
-
- biological role
-
-
-
- biological function
- ChEBI
+
+
+ trioxidonitrate(1-)
+ IUPAC
+
-
-
-
-
-
-
-
-
-
-
-
-
-
- A defined linked collection of atoms or a single atom within a molecular entity.
- group
- chebi_ontology
- Gruppe
- Rest
- groupe
- grupo
- grupos
- CHEBI:24433
-
- group
-
-
+
- group
+ trioxonitrate(1-)
IUPAC
-
+
+
+ trioxonitrate(V)
+ IUPAC
+
+
+
+
- Gruppe
- ChEBI
+ NITRATE ION
+ PDBeChem
-
+
- Rest
+ NO3
ChEBI
-
+
- groupe
+ NO3(-)
IUPAC
-
+
- grupo
+ [NO3](-)
IUPAC
-
+
- grupos
- IUPAC
+ nitrate(1-)
+ ChemIDplus
-
+
-
-
+
+
+
+
+
-
-
+
+
- halogen molecular entity
- halogen compounds
- halogen molecular entities
- halogen molecular entity
+
+
+
+
+
+
+
+
+
+
+
+
+ A mononuclear parent hydride consisting of covalently bonded hydrogen and chlorine atoms.
+ 0
+ ClH
+ HCl
+ InChI=1S/ClH/h1H
+ VEXZGXHMUGYJMC-UHFFFAOYSA-N
+ 36.46064
+ 35.97668
+ Cl[H]
+ CHEBI:13364
+ CHEBI:24635
+ CHEBI:5590
+ CAS:7647-01-0
+ Drug_Central:4568
+ Gmelin:322
+ HMDB:HMDB0002306
+ KEGG:C01327
+ KEGG:D02057
+ MetaCyc:HCL
+ PMID:15823700
+ PMID:17492841
+ PMID:22804993
+ Reaxys:1098214
+ Wikipedia:HCl
+ Wikipedia:Hydrochloric_acid
+ Hydrogen chloride
+ chlorane
+ chloridohydrogen
+ hydrogen chloride
+ chebi_ontology
+ Chlorwasserstoff
+ HCl
+ Hydrochloride
+ Hydrogenchlorid
+ Wasserstoffchlorid
+ [HCl]
+ chlorure d'hydrogene
+ cloruro de hidrogeno
+ hydrochloric acid
+ CHEBI:17883
+
+ hydrogen chloride
-
-
- halogen molecular entity
- ChEBI
+
+
+ CAS:7647-01-0
+ ChemIDplus
-
-
- halogen compounds
- ChEBI
+
+
+ CAS:7647-01-0
+ KEGG COMPOUND
-
-
- halogen molecular entities
- ChEBI
+
+
+ CAS:7647-01-0
+ NIST Chemistry WebBook
-
-
-
-
-
-
-
-
- halogen
- halogens
- Halogene
- group 17 elements
- group VII elements
- halogene
- halogenes
- halogeno
- halogenos
- halogen
-
-
+
+
+ Drug_Central:4568
+ DrugCentral
+
+
+
+
+ Gmelin:322
+ Gmelin
+
+
+
+
+ PMID:15823700
+ Europe PMC
+
+
+
+
+ PMID:17492841
+ Europe PMC
+
+
+
+
+ PMID:22804993
+ Europe PMC
+
+
+
+
+ Reaxys:1098214
+ Reaxys
+
+
+
- halogen
+ Hydrogen chloride
+ KEGG_COMPOUND
+
+
+
+
+ chlorane
IUPAC
-
+
- halogens
+ chloridohydrogen
IUPAC
-
+
+
+ hydrogen chloride
+ IUPAC
+
+
+
+
- Halogene
+ Chlorwasserstoff
ChEBI
-
+
- group 17 elements
- ChEBI
+ HCl
+ KEGG_COMPOUND
-
+
- group VII elements
- ChEBI
+ Hydrochloride
+ KEGG_COMPOUND
-
+
- halogene
+ Hydrogenchlorid
ChEBI
-
+
- halogenes
+ Wasserstoffchlorid
ChEBI
-
+
- halogeno
+ [HCl]
+ IUPAC
+
+
+
+
+ chlorure d'hydrogene
ChEBI
-
+
- halogenos
+ cloruro de hidrogeno
ChEBI
+
+
+
+ hydrochloric acid
+ ChemIDplus
+
-
+
-
-
-
-
-
-
-
-
-
-
- Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
+
+
+ A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
+ CHEBI:14202
+ CHEBI:4697
+ KEGG:C01351
+ Donor
chebi_ontology
- CHEBI:24651
+ Donator
+ donneur
+ CHEBI:17891
- hydroxides
+ donor
+
+
+
+ Donor
+ KEGG_COMPOUND
+
+
+
+
+ Donator
+ ChEBI
+
+
+
+
+ donneur
+ ChEBI
+
-
+
-
-
+
+
+
-
+
- A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
- oxoacid
- oxoacids
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A halide anion formed when chlorine picks up an electron to form an an anion.
+ -1
+ Cl
+ InChI=1S/ClH/h1H/p-1
+ VEXZGXHMUGYJMC-UHFFFAOYSA-M
+ 35.45270
+ 34.96940
+ [Cl-]
+ CHEBI:13291
+ CHEBI:13970
+ CHEBI:3616
+ CHEBI:3731
+ CHEBI:48804
+ Beilstein:3587171
+ CAS:16887-00-6
+ Gmelin:14910
+ KEGG:C00115
+ KEGG:C00698
+ PDBeChem:CL
+ UM-BBD_compID:c0884
+ Chloride
+ chloride
+ chloride(1-)
chebi_ontology
- oxacids
- oxiacids
- oxo acid
- oxy-acids
- oxyacids
- CHEBI:24833
+ CHLORIDE ION
+ Chloride ion
+ Chloride(1-)
+ Chlorine anion
+ Cl(-)
+ Cl-
+ CHEBI:17996
- oxoacid
+ chloride
-
+
+
+ Beilstein:3587171
+ Beilstein
+
+
+
+
+ CAS:16887-00-6
+ ChemIDplus
+
+
+
+
+ CAS:16887-00-6
+ KEGG COMPOUND
+
+
+
+
+ CAS:16887-00-6
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:14910
+ Gmelin
+
+
+
+
+ UM-BBD_compID:c0884
+ UM-BBD
+
+
+
- oxoacid
+ Chloride
+ KEGG_COMPOUND
+
+
+
+
+ chloride
IUPAC
-
+
- oxoacids
+ chloride
+ UniProt
+
+
+
+
+ chloride(1-)
IUPAC
-
+
- oxacids
- ChEBI
+ CHLORIDE ION
+ PDBeChem
-
+
- oxiacids
- ChEBI
+ Chloride ion
+ KEGG_COMPOUND
-
+
- oxo acid
- ChEBI
+ Chloride(1-)
+ ChemIDplus
-
+
- oxy-acids
- ChEBI
+ Chlorine anion
+ NIST_Chemistry_WebBook
-
+
- oxyacids
- ChEBI
+ Cl(-)
+ IUPAC
+
+
+
+
+ Cl-
+ KEGG_COMPOUND
-
+
-
-
-
- chebi_ontology
- inorganic anions
- CHEBI:24834
-
- inorganic anion
+
+
+
+
+ dinitrogen
-
-
-
- inorganic anions
- ChEBI
-
-
+
-
-
- A molecular entity that contains no carbon.
+
+
+
+
+
+
+
+
+ 0
+ HX
+ 1.008
+ 1.00783
+ [F,Cl,Br,I]
+ CHEBI:13368
+ CHEBI:37140
+ CHEBI:5599
+ hydrogen halide
+ hydrogen halides
chebi_ontology
- anorganische Verbindungen
- inorganic compounds
- inorganic entity
- inorganic molecular entities
- inorganics
- CHEBI:24835
+ HX
+ hydrogen halides
+ CHEBI:18140
- inorganic molecular entity
+ hydrogen halide
-
-
- anorganische Verbindungen
- ChEBI
-
-
-
-
- inorganic compounds
- ChEBI
+
+
+ hydrogen halide
+ IUPAC
-
-
- inorganic entity
- ChEBI
+
+
+ hydrogen halides
+ IUPAC
+
-
+
- inorganic molecular entities
- ChEBI
+ HX
+ UniProt
-
+
- inorganics
+ hydrogen halides
ChEBI
-
+
-
-
+
+
-
-
+
+
-
-
-
-
- A salt is an assembly of cations and anions.
- salt
- Salz
- Salze
- ionic compound
- ionic compounds
- sal
- sales
- salts
- sel
- sels
- salt
+
+
+
+
+ An iron group element atom that has atomic number 26.
+ 0
+ Fe
+ InChI=1S/Fe
+ XEEYBQQBJWHFJM-UHFFFAOYSA-N
+ 55.84500
+ 55.93494
+ [Fe]
+ CHEBI:13322
+ CHEBI:24872
+ CHEBI:5974
+ CAS:7439-89-6
+ DrugBank:DB01592
+ HMDB:HMDB0015531
+ KEGG:C00023
+ Reaxys:4122945
+ WebElements:Fe
+ iron
+ chebi_ontology
+ 26Fe
+ Eisen
+ Fe
+ Iron
+ fer
+ ferrum
+ hierro
+ iron
+ CHEBI:18248
+
+ iron atom
-
+
+
+ CAS:7439-89-6
+ ChemIDplus
+
+
+
+
+ CAS:7439-89-6
+ KEGG COMPOUND
+
+
+
+
+ CAS:7439-89-6
+ NIST Chemistry WebBook
+
+
+
+
+ Reaxys:4122945
+ Reaxys
+
+
+
- salt
+ iron
IUPAC
-
+
- Salz
- ChEBI
+ 26Fe
+ IUPAC
-
+
- Salze
+ Eisen
ChEBI
-
+
- ionic compound
- ChEBI
-
-
-
-
- ionic compounds
- ChEBI
+ Fe
+ IUPAC
-
+
- sal
- ChEBI
+ Iron
+ KEGG_COMPOUND
-
+
- sales
+ fer
ChEBI
-
+
- salts
- ChEBI
+ ferrum
+ IUPAC
-
+
- sel
+ hierro
ChEBI
-
+
- sels
+ iron
ChEBI
-
+
-
-
- A molecular entity having a net electric charge.
- Ion
- ion
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 0
+ Mn
+ InChI=1S/Mn
+ PWHULOQIROXLJO-UHFFFAOYSA-N
+ 54.93805
+ 54.93804
+ [Mn]
+ CHEBI:13382
+ CHEBI:25153
+ CHEBI:6681
+ CAS:7439-96-5
+ KEGG:C00034
+ WebElements:Mn
+ manganese
chebi_ontology
- Ionen
- iones
- ions
- CHEBI:24870
+ 25Mn
+ Mangan
+ Manganese
+ Mn
+ manganese
+ manganeso
+ manganum
+ CHEBI:18291
- ion
+ manganese atom
-
-
- Ion
- ChEBI
+
+
+ CAS:7439-96-5
+ ChemIDplus
-
-
- ion
- ChEBI
+
+
+ CAS:7439-96-5
+ KEGG COMPOUND
-
+
- ion
+ manganese
IUPAC
-
+
- Ionen
- ChEBI
+ 25Mn
+ IUPAC
-
+
- iones
- ChEBI
+ Mangan
+ NIST_Chemistry_WebBook
-
+
- ions
- ChEBI
+ Manganese
+ KEGG_COMPOUND
-
-
-
-
-
-
-
- Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
- CHEBI:26619
- CHEBI:35220
- metabolite
- chebi_ontology
- metabolites
- primary metabolites
- secondary metabolites
- CHEBI:25212
-
- metabolite
-
-
-
- metabolite
+
+
+ Mn
IUPAC
-
-
+
- metabolites
+ manganese
ChEBI
-
+
- primary metabolites
+ manganeso
ChEBI
-
+
- secondary metabolites
+ manganum
ChEBI
-
+
-
-
- Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
- molecule
- Molekuel
- molecula
- molecules
- neutral molecular compounds
- molecule
+
+
+
+
+
+
+
+
+
+ A phosphate ion that is the conjugate base of hydrogenphosphate.
+ -3
+ O4P
+ InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
+ NBIIXXVUZAFLBC-UHFFFAOYSA-K
+ 94.97136
+ 94.95507
+ [O-]P([O-])([O-])=O
+ CHEBI:14791
+ CHEBI:45024
+ CHEBI:7793
+ Beilstein:3903772
+ CAS:14265-44-2
+ Gmelin:1997
+ KEGG:C00009
+ PDBeChem:PO4
+ Reaxys:3903772
+ phosphate
+ tetraoxidophosphate(3-)
+ tetraoxophosphate(3-)
+ tetraoxophosphate(V)
+ chebi_ontology
+ Orthophosphate
+ PHOSPHATE ION
+ PO4(3-)
+ Phosphate
+ [PO4](3-)
+ CHEBI:18367
+
+ phosphate(3-)
-
+
+
+ Beilstein:3903772
+ Beilstein
+
+
+
+
+ CAS:14265-44-2
+ ChemIDplus
+
+
+
+
+ CAS:14265-44-2
+ KEGG COMPOUND
+
+
+
+
+ Gmelin:1997
+ Gmelin
+
+
+
+
+ PDBeChem:PO4
+ ChEBI
+
+
+
+
+ Reaxys:3903772
+ Reaxys
+
+
+
+
+ phosphate
+ IUPAC
+
+
+
+
+
+ tetraoxidophosphate(3-)
+ IUPAC
+
+
+
+
+
+ tetraoxophosphate(3-)
+ IUPAC
+
+
+
+
- molecule
+ tetraoxophosphate(V)
IUPAC
+
-
+
- Molekuel
- ChEBI
+ Orthophosphate
+ KEGG_COMPOUND
-
+
- molecula
- IUPAC
+ PHOSPHATE ION
+ PDBeChem
-
+
- molecules
+ PO4(3-)
IUPAC
-
+
+
+ Phosphate
+ KEGG_COMPOUND
+
+
+
- neutral molecular compounds
+ [PO4](3-)
IUPAC
-
+
-
-
-
-
-
-
-
-
-
- nitrogen
- 7N
- N
- Stickstoff
- azote
- nitrogen
- nitrogeno
- nitrogen atom
+
+
+
+
+ alkaline earth metals
+ chebi_ontology
+ Erdalkalimetall
+ Erdalkalimetalle
+ alkaline earth metal
+ alkaline-earth metal
+ alkaline-earth metals
+ metal alcalino-terreux
+ metal alcalinoterreo
+ metales alcalinoterreos
+ metaux alcalino-terreux
+ CHEBI:22313
+
+ alkaline earth metal atom
-
+
- nitrogen
+ alkaline earth metals
IUPAC
-
+
- 7N
- IUPAC
+ Erdalkalimetall
+ ChEBI
-
+
- N
- IUPAC
+ Erdalkalimetalle
+ ChEBI
-
+
- Stickstoff
+ alkaline earth metal
ChEBI
-
+
- azote
- IUPAC
+ alkaline-earth metal
+ ChEBI
-
+
- nitrogen
+ alkaline-earth metals
ChEBI
-
+
- nitrogeno
+ metal alcalino-terreux
+ ChEBI
+
+
+
+
+ metal alcalinoterreo
+ ChEBI
+
+
+
+
+ metales alcalinoterreos
+ ChEBI
+
+
+
+
+ metaux alcalino-terreux
ChEBI
-
+
-
-
- nonmetal
+
+
+
+
+ alkali metals
chebi_ontology
- Nichtmetall
- Nichtmetalle
- no metal
- no metales
- non-metal
- non-metaux
- nonmetal
- nonmetals
- CHEBI:25585
+ Alkalimetall
+ Alkalimetalle
+ alkali metal
+ metal alcalin
+ metal alcalino
+ metales alcalinos
+ metaux alcalins
+ CHEBI:22314
- nonmetal atom
+ alkali metal atom
-
+
- nonmetal
+ alkali metals
IUPAC
-
-
- Nichtmetall
- ChEBI
-
-
-
+
- Nichtmetalle
+ Alkalimetall
ChEBI
-
+
- no metal
+ Alkalimetalle
ChEBI
-
+
- no metales
+ alkali metal
ChEBI
-
+
- non-metal
+ metal alcalin
ChEBI
-
+
- non-metaux
+ metal alcalino
ChEBI
-
+
- nonmetal
+ metales alcalinos
ChEBI
-
+
- nonmetals
+ metaux alcalins
ChEBI
-
+
-
-
-
- An oxide is a chemical compound of oxygen with other chemical elements.
- oxide
+
+
+ A monoatomic or polyatomic species having one or more elementary charges of the electron.
+ Anion
+ anion
chebi_ontology
- oxides
- CHEBI:25741
+ Anionen
+ aniones
+ anions
+ CHEBI:22563
- oxide
+ anion
-
+
- oxide
+ Anion
ChEBI
-
+
+
+ anion
+ ChEBI
+
+
+
+
+ anion
+ IUPAC
+
+
+
+
- oxides
+ Anionen
+ ChEBI
+
+
+
+
+ aniones
ChEBI
+
+
+
+ anions
+ IUPAC
+
-
+
-
-
-
+
+
-
-
+
+
- 0
- O
- InChI=1S/O
- QVGXLLKOCUKJST-UHFFFAOYSA-N
- 15.99940
- 15.99491
- [O]
- KEGG:C00007
- WebElements:O
- oxygen
+ arsenic molecular entity
chebi_ontology
- 8O
- O
- Sauerstoff
- oxigeno
- oxygen
- oxygene
- CHEBI:25805
+ arsenic compounds
+ arsenic molecular entities
+ CHEBI:22632
- oxygen atom
+ arsenic molecular entity
-
+
- oxygen
- IUPAC
-
+ arsenic molecular entity
+ ChEBI
-
+
- 8O
- IUPAC
+ arsenic compounds
+ ChEBI
-
+
- O
+ arsenic molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+ A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
+ KEGG:C00701
+ Base
+ base
+ chebi_ontology
+ Base1
+ Base2
+ Basen
+ Nucleobase
+ bases
+ CHEBI:22695
+
+ base
+
+
+
+
+ Base
+ ChEBI
+
+
+
+
+ base
+ ChEBI
+
+
+
+
+ base
IUPAC
+
-
+
- Sauerstoff
- ChEBI
+ Base1
+ KEGG_COMPOUND
-
+
- oxigeno
- ChEBI
+ Base2
+ KEGG_COMPOUND
-
+
- oxygen
+ Basen
ChEBI
-
+
- oxygene
+ Nucleobase
+ KEGG_COMPOUND
+
+
+
+
+ bases
ChEBI
-
+
-
-
+
+
-
+
- oxygen molecular entity
+ boron molecular entity
chebi_ontology
- oxygen molecular entities
- CHEBI:25806
+ boron compounds
+ boron molecular entities
+ CHEBI:22916
- oxygen molecular entity
+ boron molecular entity
-
+
- oxygen molecular entity
+ boron molecular entity
ChEBI
-
+
- oxygen molecular entities
+ boron compounds
+ ChEBI
+
+
+
+
+ boron molecular entities
ChEBI
-
+
-
-
- Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom.
- phosphates
+
+
+ 0
+ Cd
+ InChI=1S/Cd
+ BDOSMKKIYDKNTQ-UHFFFAOYSA-N
+ 112.41100
+ 113.90336
+ [Cd]
+ CAS:7440-43-9
+ KEGG:C01413
+ WebElements:Cd
+ cadmium
chebi_ontology
- phosphates
- CHEBI:26020
+ 48Cd
+ Cd
+ Kadmium
+ cadmio
+ cadmium
+ CHEBI:22977
- phosphate
+ cadmium atom
-
-
- phosphates
- IUPAC
-
+
+
+ CAS:7440-43-9
+ ChemIDplus
-
-
- phosphates
- ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.
- 0
- H3O4P
- InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
- NBIIXXVUZAFLBC-UHFFFAOYSA-N
- 97.99520
- 97.97690
- [H]OP(=O)(O[H])O[H]
- Beilstein:1921286
- CAS:7664-38-2
- Drug_Central:4478
- Gmelin:2000
- HMDB:HMDB0002142
- KEGG:C00009
- KEGG:D05467
- KNApSAcK:C00007408
- PMID:11455380
- PMID:15630224
- PMID:17439666
- PMID:17518491
- PMID:22282755
- PMID:22333268
- PMID:22381614
- PMID:22401268
- Reaxys:1921286
- Wikipedia:Phosphoric_Acid
- Phosphoric acid
- phosphoric acid
- tetraoxophosphoric acid
- trihydrogen tetraoxophosphate(3-)
- trihydroxidooxidophosphorus
- chebi_ontology
- H3PO4
- Orthophosphoric acid
- Phosphate
- Phosphorsaeure
- Phosphorsaeureloesungen
- [PO(OH)3]
- acide phosphorique
- acidum phosphoricum
- orthophosphoric acid
- CHEBI:26078
-
- phosphoric acid
-
-
-
-
- Beilstein:1921286
- Beilstein
-
-
-
-
- CAS:7664-38-2
- ChemIDplus
-
-
-
+
- CAS:7664-38-2
- KEGG COMPOUND
-
-
-
-
- CAS:7664-38-2
- NIST Chemistry WebBook
-
-
-
-
- Drug_Central:4478
- DrugCentral
+ CAS:7440-43-9
+ KEGG COMPOUND
-
+
- Gmelin:2000
- Gmelin
+ CAS:7440-43-9
+ NIST Chemistry WebBook
-
-
- PMID:11455380
- Europe PMC
+
+
+ cadmium
+ IUPAC
+
-
-
- PMID:15630224
- Europe PMC
+
+
+ 48Cd
+ IUPAC
-
-
- PMID:17439666
- Europe PMC
+
+
+ Cd
+ IUPAC
-
-
- PMID:17518491
- Europe PMC
+
+
+ Kadmium
+ NIST_Chemistry_WebBook
-
-
- PMID:22282755
- Europe PMC
+
+
+ cadmio
+ ChEBI
-
-
- PMID:22333268
- Europe PMC
+
+
+ cadmium
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ chebi_ontology
+ cadmium compounds
+ cadmium molecular entities
+ CHEBI:22978
+
+ cadmium molecular entity
+
-
-
- PMID:22381614
- Europe PMC
+
+
+ cadmium compounds
+ ChEBI
-
-
- PMID:22401268
- Europe PMC
+
+
+ cadmium molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 0
+ Ca
+ InChI=1S/Ca
+ OYPRJOBELJOOCE-UHFFFAOYSA-N
+ 40.07800
+ 39.96259
+ [Ca]
+ CAS:7440-70-2
+ DrugBank:DB01373
+ KEGG:C00076
+ WebElements:Ca
+ calcium
+ chebi_ontology
+ 20Ca
+ Ca
+ Calcium
+ Kalzium
+ calcio
+ calcium
+ CHEBI:22984
+
+ calcium atom
+
-
+
- Reaxys:1921286
- Reaxys
-
-
-
-
- Phosphoric acid
- KEGG_COMPOUND
-
-
-
-
- phosphoric acid
- IUPAC
-
-
-
-
- tetraoxophosphoric acid
- IUPAC
-
-
-
-
-
- trihydrogen tetraoxophosphate(3-)
- IUPAC
-
+ CAS:7440-70-2
+ ChemIDplus
-
+
- trihydroxidooxidophosphorus
+ calcium
IUPAC
-
+
- H3PO4
+ 20Ca
IUPAC
-
+
- Orthophosphoric acid
- KEGG_COMPOUND
+ Ca
+ IUPAC
-
+
- Phosphate
+ Calcium
KEGG_COMPOUND
-
+
- Phosphorsaeure
+ Kalzium
ChEBI
-
+
- Phosphorsaeureloesungen
+ calcio
ChEBI
-
+
- [PO(OH)3]
- IUPAC
+ calcium
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ calcium molecular entity
+ chebi_ontology
+ calcium compounds
+ calcium molecular entities
+ CHEBI:22985
+
+ calcium molecular entity
+
-
-
- acide phosphorique
+
+
+ calcium molecular entity
ChEBI
-
+
- acidum phosphoricum
+ calcium compounds
ChEBI
-
+
- orthophosphoric acid
- NIST_Chemistry_WebBook
+ calcium molecular entities
+ ChEBI
-
+
-
-
-
-
-
-
-
-
- chebi_ontology
- CHEBI:26079
-
- phosphoric acid derivative
+
+
+
+ carbon oxide
-
+
-
-
-
-
-
-
-
-
- chebi_ontology
- phosphorus molecular entities
- CHEBI:26082
-
- phosphorus molecular entity
+
+
+
+ chloride salt
-
-
-
- phosphorus molecular entities
- ChEBI
-
-
+
-
-
-
-
-
-
-
-
+
+
-
+
- potassium
- 19K
- K
- Kalium
- kalium
- potasio
- potassium
- potassium atom
+ 0
+ Cl
+ InChI=1S/Cl
+ ZAMOUSCENKQFHK-UHFFFAOYSA-N
+ 35.45270
+ 34.96885
+ [Cl]
+ WebElements:Cl
+ chlorine
+ chebi_ontology
+ 17Cl
+ Chlor
+ Cl
+ chlore
+ chlorine
+ chlorum
+ cloro
+ CHEBI:23116
+
+ chlorine atom
-
+
- potassium
+ chlorine
IUPAC
-
+
- 19K
+ 17Cl
IUPAC
-
+
- K
+ Chlor
+ ChEBI
+
+
+
+
+ Cl
IUPAC
-
+
- Kalium
- ChemIDplus
+ chlore
+ ChEBI
-
+
- kalium
- IUPAC
+ chlorine
+ ChEBI
-
+
- potasio
+ chlorum
ChEBI
-
+
- potassium
+ cloro
ChEBI
-
+
-
-
+
+
-
+
- potassium molecular entity
- potassium molecular entities
- potassium molecular entity
+ A halogen molecular entity containing one or more atoms of chlorine.
+ chebi_ontology
+ CHEBI:23117
+
+ chlorine molecular entity
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ chromium molecular entity
+ chebi_ontology
+ chromium compounds
+ chromium molecular entities
+ CHEBI:23237
+
+ chromium molecular entity
-
+
- potassium molecular entity
+ chromium molecular entity
ChEBI
-
+
- potassium molecular entities
+ chromium compounds
+ ChEBI
+
+
+
+
+ chromium molecular entities
ChEBI
-
+
-
-
-
-
-
-
-
-
- sodium
- 11Na
- Na
- Natrium
- natrium
- sodio
- sodium
- sodium atom
+
+
+ An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
+ Wikipedia:Cofactor_(biochemistry)
+ cofactor
+ cofactors
+ chebi_ontology
+ CHEBI:23357
+
+ cofactor
-
+
- sodium
+ cofactor
+ IUPAC
+
+
+
+
+ cofactors
IUPAC
+
+
+
+
+
+
+
+ Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
+ molecular entity
+ chebi_ontology
+ entidad molecular
+ entidades moleculares
+ entite moleculaire
+ molecular entities
+ molekulare Entitaet
+ CHEBI:23367
+
+ molecular entity
+
-
-
- 11Na
+
+
+ molecular entity
IUPAC
+
-
+
- Na
+ entidad molecular
IUPAC
-
+
- Natrium
- ChemIDplus
+ entidades moleculares
+ IUPAC
-
+
- natrium
+ entite moleculaire
IUPAC
-
+
- sodio
- ChemIDplus
+ molecular entities
+ IUPAC
-
+
- sodium
+ molekulare Entitaet
ChEBI
-
+
-
-
+
+
-
+
- sodium compounds
- sodium molecular entities
- sodium molecular entity
+ copper molecular entity
+ chebi_ontology
+ copper compounds
+ copper molecular entities
+ CHEBI:23377
+
+ copper molecular entity
-
+
+
+ copper molecular entity
+ ChEBI
+
+
+
- sodium compounds
+ copper compounds
ChEBI
-
+
- sodium molecular entities
+ copper molecular entities
ChEBI
-
+
-
-
- Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.
- micronutrients
- trace elements
- micronutrient
+
+
+
+ chebi_ontology
+ monoatomic anions
+ CHEBI:23905
+
+ monoatomic anion
-
+
- micronutrients
+ monoatomic anions
ChEBI
+
+
+
+
+
+
+
+
+ chebi_ontology
+ monoatomic cations
+ CHEBI:23906
+
+ monoatomic cation
+
-
+
- trace elements
+ monoatomic cations
ChEBI
-
+
-
-
-
-
-
-
-
-
-
- 0
- C
- InChI=1S/C
- OKTJSMMVPCPJKN-UHFFFAOYSA-N
- 12.01070
- 12.00000
- [C]
- CHEBI:23009
- CHEBI:3399
- CAS:7440-44-0
- KEGG:C06265
- WebElements:C
- carbon
+
+
+
+ A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
+ enzyme inhibitor
chebi_ontology
- 6C
- C
- Carbon
- Kohlenstoff
- carbon
- carbone
- carbonium
- carbono
- CHEBI:27594
+ enzyme inhibitors
+ inhibidor enzimatico
+ inhibidores enzimaticos
+ inhibiteur enzymatique
+ inhibiteurs enzymatiques
+ CHEBI:23924
- carbon atom
+ enzyme inhibitor
-
-
- CAS:7440-44-0
- ChemIDplus
-
-
-
-
- CAS:7440-44-0
- KEGG COMPOUND
-
-
-
+
- carbon
+ enzyme inhibitor
IUPAC
-
+
- 6C
- IUPAC
+ enzyme inhibitors
+ ChEBI
-
+
- C
- IUPAC
+ inhibidor enzimatico
+ ChEBI
-
+
- C
- KEGG_COMPOUND
+ inhibidores enzimaticos
+ ChEBI
-
+
- Carbon
- KEGG_COMPOUND
+ inhibiteur enzymatique
+ ChEBI
-
+
- Kohlenstoff
+ inhibiteurs enzymatiques
ChEBI
+
+
+
+
+
+
+
+ A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
+ chemical entity
+ chebi_ontology
+ CHEBI:24431
+
+ chemical entity
+
+
+
+
+ chemical entity
+ UniProt
+
+
+
+
+
+
+
+
+
+ A role played by the molecular entity or part thereof within a biological context.
+ chebi_ontology
+ biological function
+ CHEBI:24432
+
+ biological role
+
-
+
- carbon
+ biological function
ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A defined linked collection of atoms or a single atom within a molecular entity.
+ group
+ chebi_ontology
+ Gruppe
+ Rest
+ groupe
+ grupo
+ grupos
+ CHEBI:24433
+
+ group
+
-
+
+
+ group
+ IUPAC
+
+
+
+
- carbone
+ Gruppe
ChEBI
-
+
- carbonium
+ Rest
ChEBI
-
+
- carbono
- ChEBI
+ groupe
+ IUPAC
+
+
+
+
+ grupo
+ IUPAC
+
+
+
+
+ grupos
+ IUPAC
-
+
-
-
-
+
+
-
-
+
+
- 0
- P
- InChI=1S/P
- OAICVXFJPJFONN-UHFFFAOYSA-N
- 30.97376
- 30.97376
- [P]
- CHEBI:26080
- CHEBI:8168
- CAS:7723-14-0
- Gmelin:16235
- KEGG:C06262
- WebElements:P
- phosphorus
+ halogen molecular entity
chebi_ontology
- 15P
- P
- Phosphor
- Phosphorus
- fosforo
- phosphore
- phosphorus
- CHEBI:28659
+ halogen compounds
+ halogen molecular entities
+ CHEBI:24471
- phosphorus atom
+ halogen molecular entity
-
-
- CAS:7723-14-0
- ChemIDplus
+
+
+ halogen molecular entity
+ ChEBI
-
-
- CAS:7723-14-0
- KEGG COMPOUND
+
+
+ halogen compounds
+ ChEBI
-
-
- Gmelin:16235
- Gmelin
+
+
+ halogen molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+ halogen
+ halogens
+ chebi_ontology
+ Halogene
+ group 17 elements
+ group VII elements
+ halogene
+ halogenes
+ halogeno
+ halogenos
+ CHEBI:24473
+
+ halogen
+
-
+
- phosphorus
+ halogen
IUPAC
-
-
- 15P
+
+
+ halogens
IUPAC
+
-
+
- P
- IUPAC
+ Halogene
+ ChEBI
-
+
- P
- KEGG_COMPOUND
+ group 17 elements
+ ChEBI
-
+
- Phosphor
+ group VII elements
ChEBI
-
+
- Phosphorus
- KEGG_COMPOUND
+ halogene
+ ChEBI
-
+
- fosforo
+ halogenes
ChEBI
-
+
- phosphore
+ halogeno
ChEBI
-
+
- phosphorus
+ halogenos
ChEBI
-
-
-
-
-
-
-
+
-
+
+
+
+
+
+
+
+
+
+
+ Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
+ chebi_ontology
+ CHEBI:24651
+
+ hydroxides
+
-
+
-
-
-
+
+
-
-
+
+
- aquahydrogen(1+)
- oxidanium
- oxonium
- trihydridooxygen(1+)
- H3O(+)
- Hydronium cation
- Hydronium ion
- [OH3](+)
- oxonium
+ A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
+ oxoacid
+ oxoacids
+ chebi_ontology
+ oxacids
+ oxiacids
+ oxo acid
+ oxy-acids
+ oxyacids
+ CHEBI:24833
+
+ oxoacid
-
-
- aquahydrogen(1+)
- IUPAC
-
-
-
-
+
- oxidanium
+ oxoacid
IUPAC
-
+
- oxonium
+ oxoacids
IUPAC
-
-
- trihydridooxygen(1+)
- IUPAC
-
+
+
+ oxacids
+ ChEBI
-
+
- H3O(+)
- IUPAC
+ oxiacids
+ ChEBI
-
+
- Hydronium cation
- NIST_Chemistry_WebBook
+ oxo acid
+ ChEBI
-
+
- Hydronium ion
- ChemIDplus
+ oxy-acids
+ ChEBI
-
+
- [OH3](+)
- MolBase
+ oxyacids
+ ChEBI
-
+
-
-
-
- Intended use of the molecular entity or part thereof by humans.
+
+
+
chebi_ontology
- CHEBI:33232
+ inorganic anions
+ CHEBI:24834
- application
+ inorganic anion
+
+
+
+ inorganic anions
+ ChEBI
+
-
+
-
-
- A particle not known to have substructure.
- elementary particle
+
+
+ A molecular entity that contains no carbon.
chebi_ontology
- elementary particles
- CHEBI:33233
+ anorganische Verbindungen
+ inorganic compounds
+ inorganic entity
+ inorganic molecular entities
+ inorganics
+ CHEBI:24835
- fundamental particle
+ inorganic molecular entity
-
-
- elementary particle
- IUPAC
-
+
+
+ anorganische Verbindungen
+ ChEBI
-
+
- elementary particles
+ inorganic compounds
+ ChEBI
+
+
+
+
+ inorganic entity
+ ChEBI
+
+
+
+
+ inorganic molecular entities
+ ChEBI
+
+
+
+
+ inorganics
ChEBI
-
+
-
-
-
-
-
-
-
-
+
+
+
chebi_ontology
- oxoacid derivatives
- CHEBI:33241
+ inorganic oxides
+ CHEBI:24836
- oxoacid derivative
+ inorganic oxide
-
+
- oxoacid derivatives
+ inorganic oxides
ChEBI
-
+
-
+
-
- inorganic hydrides
- inorganic hydride
+
+ inorganic salt
-
-
-
- inorganic hydrides
- ChEBI
-
-
+
-
-
- Any substituent group which does not contain carbon.
+
+
+ salt
+
+
+
+
+
+
+
+
+
chebi_ontology
- inorganic groups
- CHEBI:33246
+ monoatomic ions
+ CHEBI:24867
- inorganic group
+ monoatomic ion
-
+
- inorganic groups
+ monoatomic ions
ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A chemical entity constituting the smallest component of an element having the chemical properties of the element.
- CHEBI:22671
- CHEBI:23907
- atom
+
+
+ A molecular entity having a net electric charge.
+ Ion
+ ion
chebi_ontology
- atome
- atomo
- atoms
- atomus
- element
- elements
- CHEBI:33250
+ Ionen
+ iones
+ ions
+ CHEBI:24870
- atom
+ ion
-
+
- atom
+ Ion
+ ChEBI
+
+
+
+
+ ion
+ ChEBI
+
+
+
+
+ ion
IUPAC
-
+
- atome
- IUPAC
+ Ionen
+ ChEBI
-
+
- atomo
- IUPAC
+ iones
+ ChEBI
-
+
- atoms
+ ions
ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ iron molecular entity
+ chebi_ontology
+ iron compounds
+ iron molecular entities
+ CHEBI:24873
+
+ iron molecular entity
+
-
-
- atomus
+
+
+ iron molecular entity
ChEBI
-
+
- element
+ iron compounds
ChEBI
-
+
- elements
+ iron molecular entities
ChEBI
-
+
-
-
+
+
+
-
-
+
+
- A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
- nucleus
+ Fe
+ 55.845
+ 55.93494
+ iron cation
chebi_ontology
- Atomkern
- Kern
- noyau
- noyau atomique
- nuclei
- nucleo
- nucleo atomico
- nucleus atomi
- CHEBI:33252
+ Fe cation
+ iron cations
+ CHEBI:24875
- atomic nucleus
+ iron cation
-
+
- nucleus
+ iron cation
IUPAC
-
+
- Atomkern
- ChEBI
+ Fe cation
+ UniProt
-
+
- Kern
+ iron cations
ChEBI
+
+
+
+
+
+
+
+
+ 0
+ Pb
+ InChI=1S/Pb
+ WABPQHHGFIMREM-UHFFFAOYSA-N
+ 207.20000
+ 207.97665
+ [Pb]
+ KEGG:C06696
+ WebElements:Pb
+ lead
+ chebi_ontology
+ 82Pb
+ Blei
+ Pb
+ lead
+ plomb
+ plomo
+ plumbum
+ CHEBI:25016
+
+ lead atom
+
-
-
- noyau
+
+
+ lead
IUPAC
+
-
+
- noyau atomique
- ChEBI
+ 82Pb
+ IUPAC
-
+
- nuclei
+ Blei
ChEBI
-
+
- nucleo
+ Pb
IUPAC
-
+
- nucleo atomico
+ lead
ChEBI
-
+
- nucleus atomi
+ plomb
+ ChEBI
+
+
+
+
+ plomo
ChEBI
+
+
+
+ plumbum
+ IUPAC
+
-
+
-
-
-
- Heavy nuclear particle: proton or neutron.
- nucleon
+
+
+
+
+
+
+
+
+ 0
+ Mg
+ InChI=1S/Mg
+ FYYHWMGAXLPEAU-UHFFFAOYSA-N
+ 24.30500
+ 23.98504
+ [Mg]
+ CAS:7439-95-4
+ DrugBank:DB01378
+ Gmelin:16207
+ KEGG:C00305
+ WebElements:Mg
+ magnesium
chebi_ontology
- Nukleon
- Nukleonen
- nucleons
- CHEBI:33253
+ 12Mg
+ Magnesium
+ Mg
+ magnesio
+ magnesium
+ CHEBI:25107
- nucleon
+ magnesium atom
-
-
- nucleon
- IUPAC
+
+
+ CAS:7439-95-4
+ ChemIDplus
-
+
+
+ Gmelin:16207
+ Gmelin
+
+
+
- nucleon
+ magnesium
IUPAC
-
+
- Nukleon
+ 12Mg
+ IUPAC
+
+
+
+
+ Magnesium
ChEBI
-
+
- Nukleonen
+ Mg
+ IUPAC
+
+
+
+
+ magnesio
ChEBI
-
+
- nucleons
+ magnesium
ChEBI
-
+
-
-
- A molecular entity all atoms of which have the same atomic number.
- homoatomic entity
- homoatomic molecular entities
- homoatomic molecular entity
- elemental molecular entity
+
+
+
+
+
+
+
+
+ magnesium molecular entity
+ chebi_ontology
+ magnesium compounds
+ magnesium molecular entities
+ CHEBI:25108
+
+ magnesium molecular entity
-
-
- homoatomic entity
+
+
+ magnesium molecular entity
ChEBI
-
+
- homoatomic molecular entities
+ magnesium compounds
ChEBI
-
+
- homoatomic molecular entity
+ magnesium molecular entities
ChEBI
-
-
-
-
-
- elemental nitrogen
-
-
-
-
-
+
-
-
-
- An anion consisting of more than one atom.
+
+
+
+
+
+
+
+
+ manganese molecular entity
chebi_ontology
- polyatomic anions
- CHEBI:33273
+ manganese compounds
+ manganese molecular entities
+ CHEBI:25154
- polyatomic anion
+ manganese molecular entity
-
+
+
+ manganese molecular entity
+ ChEBI
+
+
+
- polyatomic anions
+ manganese compounds
+ ChEBI
+
+
+
+
+ manganese molecular entities
ChEBI
-
+
-
-
- A nutrient is a food component that an organism uses to survive and grow.
+
+
+ 0
+ Hg
+ InChI=1S/Hg
+ QSHDDOUJBYECFT-UHFFFAOYSA-N
+ 200.59000
+ 201.97064
+ [Hg]
+ CAS:7439-97-6
+ WebElements:Hg
+ mercury
chebi_ontology
- nutrients
- CHEBI:33284
+ 80Hg
+ Hg
+ Quecksilber
+ azogue
+ hydrargyrum
+ liquid silver
+ mercure
+ mercurio
+ mercury
+ quicksilver
+ CHEBI:25195
- nutrient
+ mercury atom
-
+
+
+ CAS:7439-97-6
+ ChemIDplus
+
+
+
+
+ mercury
+ IUPAC
+
+
+
+
- nutrients
+ 80Hg
+ IUPAC
+
+
+
+
+ Hg
+ IUPAC
+
+
+
+
+ Quecksilber
+ ChemIDplus
+
+
+
+
+ azogue
+ ChEBI
+
+
+
+
+ hydrargyrum
+ IUPAC
+
+
+
+
+ liquid silver
+ ChemIDplus
+
+
+
+
+ mercure
+ ChemIDplus
+
+
+
+
+ mercurio
+ ChEBI
+
+
+
+
+ mercury
ChEBI
+
+
+
+ quicksilver
+ ChemIDplus
+
-
+
-
-
- A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
- heteroorganic entities
- organoelement compounds
- heteroorganic entity
+
+
+
+
+
+
+
+
+ chebi_ontology
+ mercury compounds
+ mercury molecular entities
+ CHEBI:25196
+
+ mercury molecular entity
-
+
- heteroorganic entities
+ mercury compounds
ChEBI
-
+
- organoelement compounds
+ mercury molecular entities
ChEBI
-
+
-
-
- An agrochemical is a substance that is used in agriculture or horticulture.
- Wikipedia:Agrochemical
+
+
+ Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
+ CHEBI:26619
+ CHEBI:35220
+ metabolite
chebi_ontology
- agrichemical
- agrichemicals
- agricultural chemicals
- agrochemicals
- CHEBI:33286
+ metabolites
+ primary metabolites
+ secondary metabolites
+ CHEBI:25212
- agrochemical
+ metabolite
-
-
- agrichemical
- ChEBI
+
+
+ metabolite
+ IUPAC
+
-
+
- agrichemicals
+ metabolites
ChEBI
-
+
- agricultural chemicals
+ primary metabolites
ChEBI
-
+
- agrochemicals
+ secondary metabolites
ChEBI
-
+
-
-
- A fertilizer is any substance that is added to soil or water to assist the growth of plants.
+
+
+
chebi_ontology
- fertiliser
- fertilizers
- CHEBI:33287
+ a metal cation
+ metal cations
+ CHEBI:25213
- fertilizer
+ metal cation
-
+
- fertiliser
- ChEBI
+ a metal cation
+ UniProt
-
+
- fertilizers
+ metal cations
ChEBI
-
+
-
-
+
+
+
+ elemental molecule
+
+
+
+
+
+
+
+
+ molecule
+
+
+
+
+
+
+
+
-
+
- A molecular entity containing one or more atoms of an alkali metal.
- alkali metal molecular entities
- alkali metal molecular entity
+ chebi_ontology
+ molybdenum compounds
+ molybdenum molecular entities
+ CHEBI:25370
+
+ molybdenum molecular entity
-
+
- alkali metal molecular entities
+ molybdenum compounds
+ ChEBI
+
+
+
+
+ molybdenum molecular entities
ChEBI
-
+
-
-
- Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
- pnictogens
+
+
+
+
+
+
+
+
+
+ 0
+ N
+ 14.007
+ 14.00307
+ WebElements:N
+ nitrogen
chebi_ontology
- group 15 elements
- group V elements
- nitrogenoideos
- nitrogenoides
- pnictogene
- pnictogenes
- CHEBI:33300
+ 7N
+ N
+ Stickstoff
+ azote
+ nitrogen
+ nitrogeno
+ CHEBI:25555
- pnictogen
+ nitrogen atom
-
+
- pnictogens
+ nitrogen
IUPAC
-
+
- group 15 elements
- ChEBI
+ 7N
+ IUPAC
-
+
- group V elements
- ChEBI
+ N
+ IUPAC
-
+
- nitrogenoideos
+ Stickstoff
ChEBI
-
+
- nitrogenoides
- ChEBI
+ azote
+ IUPAC
-
+
- pnictogene
+ nitrogen
ChEBI
-
+
- pnictogenes
+ nitrogeno
ChEBI
-
+
-
-
+
+
-
-
+
+
- A p-block molecular entity containing any pnictogen.
- pnictogen molecular entity
+ 0
+ HNO2
+ InChI=1S/HNO2/c2-1-3/h(H,2,3)
+ IOVCWXUNBOPUCH-UHFFFAOYSA-N
+ 47.01348
+ 47.00073
+ [H]ON=O
+ CAS:7782-77-6
+ Gmelin:983
+ KEGG:C00088
+ PDBeChem:NO2
+ dioxonitric acid
+ hydrogen dioxonitrate(1-)
+ hydroxidooxidonitrogen
+ nitrous acid
chebi_ontology
- pnictogen molecular entities
- CHEBI:33302
+ HNO2
+ [NO(OH)]
+ nitrosyl hydroxide
+ CHEBI:25567
- pnictogen molecular entity
+ nitrous acid
-
-
- pnictogen molecular entity
- ChEBI
+
+
+ CAS:7782-77-6
+ ChemIDplus
-
-
- pnictogen molecular entities
- ChEBI
+
+
+ CAS:7782-77-6
+ NIST Chemistry WebBook
-
-
-
-
-
-
-
- Any p-block element belonging to the group 16 family of the periodic table.
- PMID:17084588
- chalcogen
- chalcogens
- chebi_ontology
- Chalkogen
- Chalkogene
- anfigeno
- anfigenos
- calcogeno
- calcogenos
- chalcogene
- chalcogenes
- group 16 elements
- group VI elements
- CHEBI:33303
-
- chalcogen
-
-
+
- PMID:17084588
- Europe PMC
+ Gmelin:983
+ Gmelin
-
+
- chalcogen
+ dioxonitric acid
IUPAC
-
+
- chalcogens
+ hydrogen dioxonitrate(1-)
IUPAC
-
-
- Chalkogen
- ChEBI
+
+
+ hydroxidooxidonitrogen
+ IUPAC
+
-
-
- Chalkogene
- ChEBI
+
+
+ nitrous acid
+ IUPAC
+
-
+
- anfigeno
- ChEBI
+ HNO2
+ IUPAC
-
+
- anfigenos
- ChEBI
+ [NO(OH)]
+ IUPAC
-
+
- calcogeno
- ChEBI
-
-
-
-
- calcogenos
- ChEBI
-
-
-
-
- chalcogene
- ChEBI
-
-
-
-
- chalcogenes
- ChEBI
-
-
-
-
- group 16 elements
- ChEBI
-
-
-
-
- group VI elements
- ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any p-block molecular entity containing a chalcogen.
- chalcogen molecular entity
- chebi_ontology
- chalcogen compounds
- chalcogen molecular entities
- CHEBI:33304
-
- chalcogen molecular entity
-
-
-
-
- chalcogen molecular entity
- ChEBI
-
-
-
-
- chalcogen compounds
- ChEBI
-
-
-
-
- chalcogen molecular entities
- ChEBI
+ nitrosyl hydroxide
+ NIST_Chemistry_WebBook
-
+
-
-
- group 14 elements
+
+
+ nonmetal
chebi_ontology
- carbon group element
- carbon group elements
- carbonoides
- cristallogene
- cristallogenes
- group IV elements
- CHEBI:33306
+ Nichtmetall
+ Nichtmetalle
+ no metal
+ no metales
+ non-metal
+ non-metaux
+ nonmetal
+ nonmetals
+ CHEBI:25585
- carbon group element atom
+ nonmetal atom
-
+
- group 14 elements
+ nonmetal
IUPAC
-
-
- carbon group element
- ChEBI
-
-
-
-
- carbon group elements
- ChEBI
-
-
-
+
- carbonoides
+ Nichtmetall
ChEBI
-
+
- cristallogene
+ Nichtmetalle
ChEBI
-
+
- cristallogenes
+ no metal
ChEBI
-
+
- group IV elements
+ no metales
ChEBI
-
-
-
-
-
-
-
- An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
- main group elements
- chebi_ontology
- Hauptgruppenelement
- Hauptgruppenelemente
- main group element
- CHEBI:33318
-
- main group element atom
-
-
-
-
- main group elements
- IUPAC
-
-
-
+
- Hauptgruppenelement
+ non-metal
ChEBI
-
+
- Hauptgruppenelemente
+ non-metaux
ChEBI
-
+
- main group element
+ nonmetal
ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- chebi_ontology
- pnictogen oxoacids
- CHEBI:33408
-
- pnictogen oxoacid
-
-
+
- pnictogen oxoacids
+ nonmetals
ChEBI
-
+
-
-
-
- A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons.
- phosphorus oxoacid
- chebi_ontology
- Oxosaeure des Phosphors
- oxoacids of phosphorus
- phosphorus oxoacids
- CHEBI:33457
-
- phosphorus oxoacid
+
+
+
+ organic oxide
-
-
-
- phosphorus oxoacid
- ChEBI
-
-
-
-
- Oxosaeure des Phosphors
- ChEBI
-
-
-
-
- oxoacids of phosphorus
- ChEBI
-
-
-
-
- phosphorus oxoacids
- ChEBI
-
-
+
-
-
-
- pnictogen oxoanion
+
+
+
+ An oxide is a chemical compound of oxygen with other chemical elements.
+ oxide
chebi_ontology
- pnictogen oxoanions
- CHEBI:33459
+ oxides
+ CHEBI:25741
- pnictogen oxoanion
+ oxide
-
+
- pnictogen oxoanion
+ oxide
ChEBI
-
+
- pnictogen oxoanions
+ oxides
ChEBI
-
+
-
-
-
-
- phosphorus oxoanion
+
+
+
+
+
+
+
+
+
+ 0
+ O
+ InChI=1S/O
+ QVGXLLKOCUKJST-UHFFFAOYSA-N
+ 15.99940
+ 15.99491
+ [O]
+ KEGG:C00007
+ WebElements:O
+ oxygen
chebi_ontology
- oxoanions of phosphorus
- phosphorus oxoanions
- CHEBI:33461
+ 8O
+ O
+ Sauerstoff
+ oxigeno
+ oxygen
+ oxygene
+ CHEBI:25805
- phosphorus oxoanion
-
-
-
-
- phosphorus oxoanion
- ChEBI
-
-
-
-
- oxoanions of phosphorus
- ChEBI
-
-
-
-
- phosphorus oxoanions
- ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- elemental pnictogen
- elemental pnictogens
- elemental pnictogen
+ oxygen atom
-
+
- elemental pnictogen
- ChEBI
+ oxygen
+ IUPAC
+
-
+
- elemental pnictogens
- ChEBI
+ 8O
+ IUPAC
-
-
-
-
-
-
-
- An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
- elemental metal
- elemental metals
- metal element
- metal elements
- metals
- metal atom
-
-
+
- elemental metal
- ChEBI
+ O
+ IUPAC
-
+
- elemental metals
+ Sauerstoff
ChEBI
-
+
- metal element
+ oxigeno
ChEBI
-
+
- metal elements
+ oxygen
ChEBI
-
+
- metals
+ oxygene
ChEBI
-
+
-
-
+
+
+
+
+
+
+
+
+ oxygen molecular entity
chebi_ontology
- s-block element
- s-block elements
- CHEBI:33559
+ oxygen molecular entities
+ CHEBI:25806
- s-block element atom
+ oxygen molecular entity
-
-
- s-block element
+
+
+ oxygen molecular entity
ChEBI
-
+
- s-block elements
+ oxygen molecular entities
ChEBI
-
+
-
-
- Any main group element atom belonging to the p-block of the periodic table.
+
+
+ Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom.
+ phosphates
chebi_ontology
- p-block element
- p-block elements
- CHEBI:33560
+ phosphates
+ CHEBI:26020
- p-block element atom
+ phosphate
-
-
- p-block element
- ChEBI
+
+
+ phosphates
+ IUPAC
+
-
+
- p-block elements
+ phosphates
ChEBI
-
+
-
-
+
+
-
-
+
+
- A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
- chebi_ontology
- main group compounds
- main group molecular entities
- CHEBI:33579
-
- main group molecular entity
-
-
-
-
- main group compounds
- ChEBI
-
-
-
-
- main group molecular entities
- ChEBI
-
-
-
-
-
-
-
-
-
-
+
+
- carbon group molecular entity
- chebi_ontology
- carbon group molecular entities
- CHEBI:33582
-
- carbon group molecular entity
-
-
-
-
- carbon group molecular entity
- ChEBI
-
-
-
-
- carbon group molecular entities
- ChEBI
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.
+ 0
+ H3O4P
+ InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
+ NBIIXXVUZAFLBC-UHFFFAOYSA-N
+ 97.99520
+ 97.97690
+ [H]OP(=O)(O[H])O[H]
+ Beilstein:1921286
+ CAS:7664-38-2
+ Drug_Central:4478
+ Gmelin:2000
+ HMDB:HMDB0002142
+ KEGG:C00009
+ KEGG:D05467
+ KNApSAcK:C00007408
+ PMID:11455380
+ PMID:15630224
+ PMID:17439666
+ PMID:17518491
+ PMID:22282755
+ PMID:22333268
+ PMID:22381614
+ PMID:22401268
+ Reaxys:1921286
+ Wikipedia:Phosphoric_Acid
+ Phosphoric acid
+ phosphoric acid
+ tetraoxophosphoric acid
+ trihydrogen tetraoxophosphate(3-)
+ trihydroxidooxidophosphorus
chebi_ontology
- hydrogen compounds
- hydrogen molecular entities
- CHEBI:33608
+ H3PO4
+ Orthophosphoric acid
+ Phosphate
+ Phosphorsaeure
+ Phosphorsaeureloesungen
+ [PO(OH)3]
+ acide phosphorique
+ acidum phosphoricum
+ orthophosphoric acid
+ CHEBI:26078
- hydrogen molecular entity
+ phosphoric acid
-
+
+
+ Beilstein:1921286
+ Beilstein
+
+
+
+
+ CAS:7664-38-2
+ ChemIDplus
+
+
+
+
+ CAS:7664-38-2
+ KEGG COMPOUND
+
+
+
+
+ CAS:7664-38-2
+ NIST Chemistry WebBook
+
+
+
+
+ Drug_Central:4478
+ DrugCentral
+
+
+
+
+ Gmelin:2000
+ Gmelin
+
+
+
+
+ PMID:11455380
+ Europe PMC
+
+
+
+
+ PMID:15630224
+ Europe PMC
+
+
+
+
+ PMID:17439666
+ Europe PMC
+
+
+
+
+ PMID:17518491
+ Europe PMC
+
+
+
+
+ PMID:22282755
+ Europe PMC
+
+
+
+
+ PMID:22333268
+ Europe PMC
+
+
+
+
+ PMID:22381614
+ Europe PMC
+
+
+
+
+ PMID:22401268
+ Europe PMC
+
+
+
+
+ Reaxys:1921286
+ Reaxys
+
+
+
+
+ Phosphoric acid
+ KEGG_COMPOUND
+
+
+
+
+ phosphoric acid
+ IUPAC
+
+
+
+
+ tetraoxophosphoric acid
+ IUPAC
+
+
+
+
+
+ trihydrogen tetraoxophosphate(3-)
+ IUPAC
+
+
+
+
+
+ trihydroxidooxidophosphorus
+ IUPAC
+
+
+
+
- hydrogen compounds
+ H3PO4
+ IUPAC
+
+
+
+
+ Orthophosphoric acid
+ KEGG_COMPOUND
+
+
+
+
+ Phosphate
+ KEGG_COMPOUND
+
+
+
+
+ Phosphorsaeure
ChEBI
-
+
- hydrogen molecular entities
+ Phosphorsaeureloesungen
ChEBI
+
+
+
+ [PO(OH)3]
+ IUPAC
+
+
+
+
+ acide phosphorique
+ ChEBI
+
+
+
+
+ acidum phosphoricum
+ ChEBI
+
+
+
+
+ orthophosphoric acid
+ NIST_Chemistry_WebBook
+
-
+
-
+
+
+
+
+
+
+
+
+ chebi_ontology
+ CHEBI:26079
+
+ phosphoric acid derivative
+
-
+
-
+
+
+
+
+
+
+
+
+ chebi_ontology
+ phosphorus molecular entities
+ CHEBI:26082
+
+ phosphorus molecular entity
+
+
+
+
+ phosphorus molecular entities
+ ChEBI
+
-
+
-
-
+
+
-
-
+
+
- An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
- s-block molecular entity
+
+
+
+
+
+
+ 0
+ K
+ InChI=1S/K
+ ZLMJMSJWJFRBEC-UHFFFAOYSA-N
+ 39.09830
+ 38.96371
+ [K]
+ CAS:7440-09-7
+ DrugBank:DB01345
+ KEGG:C00238
+ WebElements:K
+ potassium
chebi_ontology
- s-block compounds
- s-block molecular entities
- CHEBI:33674
+ 19K
+ K
+ Kalium
+ kalium
+ potasio
+ potassium
+ CHEBI:26216
- s-block molecular entity
+ potassium atom
-
+
+
+ CAS:7440-09-7
+ ChemIDplus
+
+
+
- s-block molecular entity
- ChEBI
+ potassium
+ IUPAC
+
-
+
- s-block compounds
+ 19K
+ IUPAC
+
+
+
+
+ K
+ IUPAC
+
+
+
+
+ Kalium
+ ChemIDplus
+
+
+
+
+ kalium
+ IUPAC
+
+
+
+
+ potasio
ChEBI
-
+
- s-block molecular entities
+ potassium
ChEBI
-
+
-
-
+
+
-
+
- A main group molecular entity that contains one or more atoms of a p-block element.
+ potassium molecular entity
chebi_ontology
- p-block compounds
- p-block molecular entities
- p-block molecular entitiy
- CHEBI:33675
+ potassium molecular entities
+ CHEBI:26217
- p-block molecular entity
+ potassium molecular entity
-
-
- p-block compounds
- ChEBI
-
-
-
-
- p-block molecular entities
+
+
+ potassium molecular entity
ChEBI
-
+
- p-block molecular entitiy
+ potassium molecular entities
ChEBI
-
-
-
-
-
- Hydrides are chemical compounds of hydrogen with other chemical elements.
- hydrides
-
-
-
-
-
+
-
-
- oxygen hydride
- hydrides of oxygen
- oxygen hydrides
- oxygen hydride
+
+
+
+
+
+
+
+
+ selenium molecular entity
+ chebi_ontology
+ selenium molecular entities
+ CHEBI:26628
+
+ selenium molecular entity
-
+
- oxygen hydride
- ChEBI
-
-
-
-
- hydrides of oxygen
+ selenium molecular entity
ChEBI
-
+
- oxygen hydrides
+ selenium molecular entities
ChEBI
-
+
-
-
-
- A macromolecule formed by a living organism.
- biopolymer
- Biopolymere
- biomacromolecules
- biopolymers
- biomacromolecule
+
+
+
+
+
+
+
+
+ silicon molecular entity
+ chebi_ontology
+ silicon compounds
+ silicon molecular entities
+ CHEBI:26677
+
+ silicon molecular entity
-
+
- biopolymer
- IUPAC
-
-
-
-
-
- Biopolymere
+ silicon molecular entity
ChEBI
-
+
- biomacromolecules
+ silicon compounds
ChEBI
-
+
- biopolymers
+ silicon molecular entities
ChEBI
-
-
-
-
-
-
-
+
-
-
- A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
- macromolecule
- macromolecules
- polymer
- polymer molecule
- polymers
- macromolecule
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 0
+ Na
+ InChI=1S/Na
+ KEAYESYHFKHZAL-UHFFFAOYSA-N
+ 22.98977
+ 22.98977
+ [Na]
+ CAS:7440-23-5
+ Gmelin:16221
+ KEGG:C01330
+ WebElements:Na
+ sodium
+ chebi_ontology
+ 11Na
+ Na
+ Natrium
+ natrium
+ sodio
+ sodium
+ CHEBI:26708
+
+ sodium atom
-
+
+
+ CAS:7440-23-5
+ ChemIDplus
+
+
+
+
+ Gmelin:16221
+ Gmelin
+
+
+
- macromolecule
+ sodium
IUPAC
-
+
- macromolecules
- ChEBI
+ 11Na
+ IUPAC
-
+
- polymer
- ChEBI
+ Na
+ IUPAC
+
+
+
+
+ Natrium
+ ChemIDplus
-
+
- polymer molecule
+ natrium
IUPAC
-
+
+
+ sodio
+ ChemIDplus
+
+
+
- polymers
+ sodium
ChEBI
-
+
-
-
- Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.
+
+
+
+ sodium chloride
+
+
+
+
+
+
+
+
+
+
+
+
+
+
chebi_ontology
- macronutrients
- CHEBI:33937
+ sodium compounds
+ sodium molecular entities
+ CHEBI:26712
- macronutrient
+ sodium molecular entity
-
+
- macronutrients
+ sodium compounds
+ ChEBI
+
+
+
+
+ sodium molecular entities
ChEBI
-
+
-
+
+
+
+ sodium salt
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
- CHEBI:33274
- CHEBI:33436
- oxoanion
+
+
+
+
+
+
+
+
+
+ 0
+ S
+ InChI=1S/S
+ NINIDFKCEFEMDL-UHFFFAOYSA-N
+ 32.06600
+ 31.97207
+ [S]
+ CAS:7704-34-9
+ KEGG:C00087
+ KEGG:D06527
+ PPDB:605
+ WebElements:S
+ sulfur
chebi_ontology
- oxoacid anions
- oxoanions
- CHEBI:35406
+ 16S
+ Elemental sulfur
+ S
+ Schwefel
+ azufre
+ soufre
+ sulfur
+ sulphur
+ theion
+ CHEBI:26833
- oxoanion
+ sulfur atom
-
+
+
+ CAS:7704-34-9
+ ChemIDplus
+
+
+
+
+ CAS:7704-34-9
+ NIST Chemistry WebBook
+
+
+
- oxoanion
- ChEBI
+ sulfur
+ IUPAC
+
-
+
- oxoacid anions
+ 16S
+ IUPAC
+
+
+
+
+ Elemental sulfur
+ KEGG_COMPOUND
+
+
+
+
+ S
+ IUPAC
+
+
+
+
+ S
+ KEGG_COMPOUND
+
+
+
+
+ Schwefel
ChEBI
-
+
- oxoanions
+ azufre
ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A phosphorus oxoanion that is the conjugate base of phosphoric acid.
- chebi_ontology
- Pi
- phosphate
- phosphate ions
- CHEBI:35780
-
- phosphate ion
-
-
+
- Pi
+ soufre
ChEBI
-
+
- phosphate
+ sulfur
ChEBI
-
+
- phosphate ions
+ sulfur
+ UniProt
+
+
+
+
+ sulphur
ChEBI
+
+
+
+ theion
+ IUPAC
+
-
-
-
-
-
-
-
+
-
-
-
- Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
+
+
+
+
+
+
+
+
+ sulfur molecular entity
chebi_ontology
- leptons
- CHEBI:36338
+ sulfur molecular entities
+ CHEBI:26835
- lepton
+ sulfur molecular entity
-
+
+
+ sulfur molecular entity
+ ChEBI
+
+
+
- leptons
+ sulfur molecular entities
ChEBI
-
+
-
-
-
- Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A sulfur oxoacid that consists of two oxo and two hydroxy groups joined covalently to a central sulfur atom.
+ 0
+ H2O4S
+ InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)
+ QAOWNCQODCNURD-UHFFFAOYSA-N
+ 98.07948
+ 97.96738
+ [H]OS(=O)(=O)O[H]
+ CAS:7664-93-9
+ Gmelin:2122
+ KEGG:C00059
+ KEGG:D05963
+ KNApSAcK:C00007530
+ MolBase:4
+ PMID:13568755
+ PMID:16122922
+ PMID:19397353
+ PMID:22047659
+ PMID:22136045
+ PMID:22204399
+ PMID:22267186
+ PMID:22296037
+ PMID:22364556
+ PMID:22435616
+ PPDB:606
+ Reaxys:2037554
+ Wikipedia:Sulfuric_acid
+ Sulfuric acid
+ dihydrogen tetraoxosulfate
+ dihydroxidodioxidosulfur
+ hydrogen tetraoxosulfate(2-)
+ hydrogen tetraoxosulfate(VI)
+ sulfuric acid
+ tetraoxosulfuric acid
chebi_ontology
- baryons
- CHEBI:36339
+ Acide sulfurique
+ Acido sulfurico
+ Acidum sulfuricum
+ H2SO4
+ Schwefelsaeureloesungen
+ [S(OH)2O2]
+ [SO2(OH)2]
+ sulphuric acid
+ CHEBI:26836
- baryon
+ sulfuric acid
-
-
- baryons
+
+
+ CAS:7664-93-9
+ ChemIDplus
+
+
+
+
+ CAS:7664-93-9
+ KEGG COMPOUND
+
+
+
+
+ CAS:7664-93-9
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:2122
+ Gmelin
+
+
+
+
+ PMID:13568755
+ Europe PMC
+
+
+
+
+ PMID:16122922
+ Europe PMC
+
+
+
+
+ PMID:19397353
+ Europe PMC
+
+
+
+
+ PMID:22047659
+ Europe PMC
+
+
+
+
+ PMID:22136045
+ Europe PMC
+
+
+
+
+ PMID:22204399
+ Europe PMC
+
+
+
+
+ PMID:22267186
+ Europe PMC
+
+
+
+
+ PMID:22296037
+ Europe PMC
+
+
+
+
+ PMID:22364556
+ Europe PMC
+
+
+
+
+ PMID:22435616
+ Europe PMC
+
+
+
+
+ Reaxys:2037554
+ Reaxys
+
+
+
+
+ Sulfuric acid
+ KEGG_COMPOUND
+
+
+
+
+ dihydrogen tetraoxosulfate
+ IUPAC
+
+
+
+
+
+ dihydroxidodioxidosulfur
+ IUPAC
+
+
+
+
+
+ hydrogen tetraoxosulfate(2-)
+ IUPAC
+
+
+
+
+
+ hydrogen tetraoxosulfate(VI)
+ IUPAC
+
+
+
+
+
+ sulfuric acid
ChEBI
+
+
+
+ sulfuric acid
+ IUPAC
+
+
+
+
+
+ tetraoxosulfuric acid
+ IUPAC
+
+
+
+
+
+ Acide sulfurique
+ ChemIDplus
+
+
+
+
+ Acido sulfurico
+ ChemIDplus
+
+
+
+
+ Acidum sulfuricum
+ ChemIDplus
+
+
+
+
+ H2SO4
+ IUPAC
+
+
+
+
+ Schwefelsaeureloesungen
+ ChemIDplus
+
+
+
+
+ [S(OH)2O2]
+ MolBase
+
+
+
+
+ [SO2(OH)2]
+ IUPAC
+
+
+
+
+ sulphuric acid
+ MolBase
+
-
+
-
-
- Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
- fermion
+
+
+
+
+
+
+
+
+
+ 0
+ Sn
+ InChI=1S/Sn
+ ATJFFYVFTNAWJD-UHFFFAOYSA-N
+ 118.71000
+ 119.90220
+ [Sn]
+ CAS:7440-31-5
+ UM-BBD_compID:c0585
+ WebElements:Sn
+ tin
chebi_ontology
- fermions
- CHEBI:36340
+ 50Sn
+ Sn
+ Zinn
+ estano
+ etain
+ stannum
+ tin
+ CHEBI:27007
- fermion
+ tin atom
-
+
+
+ CAS:7440-31-5
+ ChemIDplus
+
+
+
+
+ UM-BBD_compID:c0585
+ UM-BBD
+
+
+
- fermion
+ tin
IUPAC
-
+
- fermions
+ 50Sn
+ IUPAC
+
+
+
+
+ Sn
+ IUPAC
+
+
+
+
+ Zinn
+ ChemIDplus
+
+
+
+
+ estano
+ ChEBI
+
+
+
+
+ etain
+ ChEBI
+
+
+
+
+ stannum
+ IUPAC
+
+
+
+
+ tin
ChEBI
-
+
-
- A particle smaller than an atom.
- Wikipedia:Subatomic_particle
+
+
+
+
+
+
+
+
chebi_ontology
- subatomic particles
- CHEBI:36342
+ tin compounds
+ tin molecular entities
+ CHEBI:27008
- subatomic particle
+ tin molecular entity
-
+
- subatomic particles
+ tin compounds
+ ChEBI
+
+
+
+
+ tin molecular entities
ChEBI
-
+
-
-
- A subatomic particle known to have substructure (i.e. consisting of smaller particles).
+
+
+ Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.
+ Wikipedia:Micronutrient
chebi_ontology
- composite particles
- CHEBI:36343
+ micronutrients
+ trace elements
+ CHEBI:27027
- composite particle
+ micronutrient
-
+
- composite particles
+ micronutrients
+ ChEBI
+
+
+
+
+ trace elements
ChEBI
-
+
-
-
- Hadron is a subatomic particle which experiences the strong force.
+
+
+ An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell.
+ transition element
chebi_ontology
- hadrons
- CHEBI:36344
+ Uebergangselement
+ Uebergangsmetalle
+ metal de transicion
+ metal de transition
+ metales de transicion
+ metaux de transition
+ transition element
+ transition elements
+ transition metal
+ transition metals
+ CHEBI:27081
- hadron
+ transition element atom
-
+
+
+ transition element
+ IUPAC
+
+
+
+
- hadrons
+ Uebergangselement
+ ChEBI
+
+
+
+
+ Uebergangsmetalle
+ ChEBI
+
+
+
+
+ metal de transicion
+ ChEBI
+
+
+
+
+ metal de transition
+ ChEBI
+
+
+
+
+ metales de transicion
+ ChEBI
+
+
+
+
+ metaux de transition
+ ChEBI
+
+
+
+
+ transition element
+ ChEBI
+
+
+
+
+ transition elements
+ ChEBI
+
+
+
+
+ transition metal
+ ChEBI
+
+
+
+
+ transition metals
ChEBI
-
+
-
-
- A nucleus or any of its constituents in any of their energy states.
- nuclear particle
+
+
+ 0
+ U
+ InChI=1S/U
+ JFALSRSLKYAFGM-UHFFFAOYSA-N
+ 238.02890
+ 238.05079
+ [U]
+ CAS:7440-61-1
+ WebElements:U
+ uranium
chebi_ontology
- CHEBI:36347
+ 92U
+ U
+ Uran
+ uranio
+ uranium
+ CHEBI:27214
- nuclear particle
+ uranium atom
-
+
+
+ CAS:7440-61-1
+ ChemIDplus
+
+
+
- nuclear particle
+ uranium
IUPAC
+
+
+
+ 92U
+ IUPAC
+
+
+
+
+ U
+ IUPAC
+
+
+
+
+ Uran
+ ChEBI
+
+
+
+
+ uranio
+ ChEBI
+
+
+
+
+ uranium
+ ChEBI
+
-
+
-
-
+
+
-
+
- Any molecular entity consisting of more than one atom.
+ vanadium molecular entity
chebi_ontology
- polyatomic entities
- CHEBI:36357
+ vanadium compounds
+ vanadium molecular entities
+ CHEBI:27275
- polyatomic entity
+ vanadium molecular entity
-
+
+
+ vanadium molecular entity
+ ChEBI
+
+
+
- polyatomic entities
+ vanadium compounds
ChEBI
-
-
-
-
-
-
-
-
- An ion consisting of more than one atom.
- chebi_ontology
- polyatomic ions
- CHEBI:36358
-
- polyatomic ion
-
-
+
- polyatomic ions
+ vanadium molecular entities
ChEBI
-
+
-
-
-
+
+
-
-
+
+
- phosphorus oxoacid derivative
+ 0
+ Zn
+ InChI=1S/Zn
+ HCHKCACWOHOZIP-UHFFFAOYSA-N
+ 65.39000
+ 63.92914
+ [Zn]
+ CAS:7440-66-6
+ Gmelin:16321
+ KEGG:C00038
+ PDBeChem:ZN
+ WebElements:Zn
+ zinc
chebi_ontology
- CHEBI:36359
+ 30Zn
+ Zink
+ Zn
+ Zn(II)
+ Zn2+
+ cinc
+ zinc
+ zincum
+ CHEBI:27363
- phosphorus oxoacid derivative
+ zinc atom
-
-
- phosphorus oxoacid derivative
- ChEBI
+
+
+ CAS:7440-66-6
+ ChemIDplus
-
-
-
-
-
-
-
- chebi_ontology
- CHEBI:36360
-
- phosphorus oxoacids and derivatives
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- chalcogen hydride
- chalcogen hydrides
- chalcogen hydride
-
-
-
-
- chalcogen hydride
- ChEBI
-
-
-
-
- chalcogen hydrides
- ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- chebi_ontology
- inorganic ions
- CHEBI:36914
-
- inorganic ion
-
-
-
-
- inorganic ions
- ChEBI
-
-
-
-
-
-
-
-
- A monoatomic or polyatomic species having one or more elementary charges of the proton.
- Cation
- cation
- Kation
- Kationen
- cationes
- cations
- cation
-
-
-
- Cation
- KEGG_COMPOUND
+
+
+ CAS:7440-66-6
+ KEGG COMPOUND
-
-
- cation
- ChEBI
+
+
+ Gmelin:16321
+ Gmelin
-
+
- cation
+ zinc
IUPAC
-
+
- Kation
- ChEBI
+ 30Zn
+ IUPAC
-
+
- Kationen
+ Zink
ChEBI
-
+
- cationes
- ChEBI
+ Zn
+ IUPAC
-
+
- cations
- ChEBI
+ Zn(II)
+ KEGG_COMPOUND
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
- organochalcogen compound
- organochalcogen compounds
- organochalcogen compound
-
-
-
- organochalcogen compound
- ChEBI
+
+
+ Zn2+
+ KEGG_COMPOUND
-
+
- organochalcogen compounds
+ cinc
ChEBI
-
-
-
-
-
-
-
-
- An organochalcogen compound containing at least one carbon-oxygen bond.
- organooxygen compound
- organooxygen compounds
- organooxygen compound
-
-
-
- organooxygen compound
+
+
+ zinc
ChEBI
-
+
- organooxygen compounds
+ zincum
ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
-
-
- mononuclear parent hydrides
- mononuclear hydride
- mononuclear hydrides
- mononuclear parent hydride
+
+
+
+
+
+
+
+
+ chebi_ontology
+ zinc compounds
+ zinc molecular entities
+ CHEBI:27364
+
+ zinc molecular entity
-
-
- mononuclear parent hydrides
- IUPAC
-
-
-
-
+
- mononuclear hydride
+ zinc compounds
ChEBI
-
+
- mononuclear hydrides
- IUPAC
+ zinc molecular entities
+ ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- elemental potassium
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
-
-
- An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
- CHEBI:13800
- CHEBI:13801
- CHEBI:22209
- CHEBI:2426
- KEGG:C00174
- Acid
- acid
+
+
+
+
+
+
+
+
+
+
+ 0
+ B
+ InChI=1S/B
+ ZOXJGFHDIHLPTG-UHFFFAOYSA-N
+ 10.81100
+ 11.00930
+ [B]
+ CHEBI:22915
+ CHEBI:3152
+ CAS:7440-42-8
+ KEGG:C06266
+ WebElements:B
+ boron
chebi_ontology
- Saeure
- Saeuren
- acide
- acido
- acids
- an acid
- CHEBI:37527
+ 5B
+ B
+ Bor
+ Boron
+ boracium
+ bore
+ boro
+ boron
+ CHEBI:27560
- acid
+ boron atom
-
-
- Acid
- KEGG_COMPOUND
+
+
+ CAS:7440-42-8
+ ChemIDplus
-
+
+
+ CAS:7440-42-8
+ KEGG COMPOUND
+
+
+
- acid
+ boron
IUPAC
-
-
- Saeure
- ChEBI
-
-
-
+
- Saeuren
- ChEBI
+ 5B
+ IUPAC
-
+
- acide
- IUPAC
+ B
+ KEGG_COMPOUND
-
+
- acido
+ Bor
ChEBI
-
+
- acids
- ChEBI
+ Boron
+ KEGG_COMPOUND
-
+
- an acid
- UniProt
+ boracium
+ ChEBI
-
-
-
-
-
-
-
- A molecular entity consisting of two or more chemical elements.
- chebi_ontology
- chemical compound
- heteroatomic molecular entities
- CHEBI:37577
-
- heteroatomic molecular entity
-
-
+
- chemical compound
+ bore
ChEBI
-
+
- heteroatomic molecular entities
+ boro
ChEBI
-
-
-
-
-
-
-
-
- Any heteroatomic molecular entity that is a chemical compound of halogen with other chemical elements.
- halides
- halide
-
-
+
- halides
+ boron
ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
-
-
-
- A molecular entity capable of donating a hydron to an acceptor (Bronsted base).
- Bronsted acid
+
+
+
+
+
+
+
+
+
+ 0
+ As
+ InChI=1S/As
+ RQNWIZPPADIBDY-UHFFFAOYSA-N
+ 74.92160
+ 74.92159
+ [As]
+ CHEBI:22630
+ CHEBI:2845
+ CAS:7440-38-2
+ KEGG:C06269
+ WebElements:As
+ arsenic
chebi_ontology
- Bronsted-Saeure
- acide de Bronsted
- donneur d'hydron
- hydron donor
- CHEBI:39141
+ 33As
+ Arsen
+ Arsenic
+ As
+ arsenic
+ arsenico
+ arsenicum
+ CHEBI:27563
- Bronsted acid
+ arsenic atom
-
-
- Bronsted acid
- IUPAC
-
+
+
+ CAS:7440-38-2
+ ChemIDplus
-
-
- Bronsted-Saeure
- ChEBI
+
+
+ CAS:7440-38-2
+ KEGG COMPOUND
-
-
- acide de Bronsted
+
+
+ arsenic
IUPAC
+
-
+
- donneur d'hydron
+ 33As
IUPAC
-
+
- hydron donor
- IUPAC
+ Arsen
+ ChemIDplus
-
-
-
-
-
-
-
-
- A molecular entity capable of accepting a hydron from a donor (Bronsted acid).
- Bronsted base
- Bronsted-Base
- accepteur d'hydron
- base de Bronsted
- hydron acceptor
- Bronsted base
-
-
-
- Bronsted base
- IUPAC
-
+
+
+ Arsenic
+ KEGG_COMPOUND
-
+
- Bronsted-Base
- ChEBI
+ As
+ KEGG_COMPOUND
-
+
- accepteur d'hydron
- IUPAC
+ arsenic
+ ChEBI
-
+
- base de Bronsted
- IUPAC
+ arsenico
+ ChEBI
-
+
- hydron acceptor
- IUPAC
+ arsenicum
+ ChEBI
-
+
-
-
-
+
+
+
-
-
+
+
- A monovalent inorganic anion that consists of phosphoric acid in which one of the three OH groups has been deprotonated.
- -1
- H2O4P
- InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-1
- NBIIXXVUZAFLBC-UHFFFAOYSA-M
- 96.98724
- 96.96962
- [H]OP([O-])(=O)O[H]
- CHEBI:29137
- CHEBI:39739
- DrugBank:DB02831
- Gmelin:1999
- PDBeChem:2HP
- dihydrogen(tetraoxidophosphate)(1-)
- dihydrogenphosphate
- dihydrogentetraoxophosphate(1-)
- dihydrogentetraoxophosphate(V)
- dihydroxidodioxidophosphate(1-)
+ 0
+ Se
+ InChI=1S/Se
+ BUGBHKTXTAQXES-UHFFFAOYSA-N
+ 78.96000
+ 79.91652
+ [Se]
+ CHEBI:26627
+ CHEBI:9091
+ CAS:7782-49-2
+ DrugBank:DB11135
+ FooDB:FDB013400
+ HMDB:HMDB0001349
+ KEGG:C01529
+ WebElements:Se
+ Wikipedia:Selenium
+ selenium
chebi_ontology
- DIHYDROGENPHOSPHATE ION
- H2PO4(-)
- [PO2(OH)2](-)
- CHEBI:39745
+ 34Se
+ Se
+ Selen
+ Selenium
+ selenio
+ selenium
+ CHEBI:27568
- dihydrogenphosphate
+ selenium atom
-
+
- Gmelin:1999
- Gmelin
+ CAS:7782-49-2
+ ChemIDplus
-
-
- dihydrogen(tetraoxidophosphate)(1-)
- IUPAC
-
+
+
+ CAS:7782-49-2
+ NIST Chemistry WebBook
-
+
- dihydrogenphosphate
+ selenium
IUPAC
-
-
- dihydrogentetraoxophosphate(1-)
+
+
+ 34Se
IUPAC
-
-
-
- dihydrogentetraoxophosphate(V)
+
+
+ Se
IUPAC
-
-
-
- dihydroxidodioxidophosphate(1-)
- IUPAC
-
+
+
+ Selen
+ ChemIDplus
-
+
- DIHYDROGENPHOSPHATE ION
- PDBeChem
+ Selenium
+ KEGG_COMPOUND
-
+
- H2PO4(-)
- IUPAC
+ selenio
+ ChEBI
-
+
- [PO2(OH)2](-)
- IUPAC
+ selenium
+ ChEBI
-
+
-
-
+
+
+
+
0
- HO
- 17.00734
- 17.00274
- *O[H]
- CHEBI:24706
- CHEBI:43171
- PDBeChem:OH
- HYDROXY GROUP
- hydroxy
- hydroxy group
- oxidanyl
+ Si
+ InChI=1S/Si
+ XUIMIQQOPSSXEZ-UHFFFAOYSA-N
+ 28.08550
+ 27.97693
+ [Si]
+ CHEBI:26676
+ CHEBI:9140
+ CAS:7440-21-3
+ KEGG:C06263
+ WebElements:Si
+ silicon
chebi_ontology
- -OH
- hydroxyl
- hydroxyl group
- CHEBI:43176
+ 14Si
+ Si
+ Silicon
+ Silizium
+ silicio
+ silicium
+ silicon
+ CHEBI:27573
- hydroxy group
+ silicon atom
-
-
- HYDROXY GROUP
- PDBeChem
+
+
+ CAS:7440-21-3
+ ChemIDplus
-
+
- hydroxy
+ silicon
IUPAC
-
-
- hydroxy group
- UniProt
+
+
+ 14Si
+ IUPAC
-
-
- oxidanyl
+
+
+ Si
IUPAC
-
-
+
- -OH
- IUPAC
+ Si
+ KEGG_COMPOUND
-
+
- hydroxyl
+ Silicon
+ KEGG_COMPOUND
+
+
+
+
+ Silizium
ChEBI
-
+
- hydroxyl group
+ silicio
+ ChEBI
+
+
+
+
+ silicium
+ ChEBI
+
+
+
+
+ silicon
ChEBI
-
+
-
-
-
-
-
-
-
-
-
+
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
- A phosphate ion that is the conjugate base of dihydrogenphosphate.
- -2
- HO4P
- InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-2
- NBIIXXVUZAFLBC-UHFFFAOYSA-L
- 95.97930
- 95.96234
- OP([O-])([O-])=O
- CHEBI:29139
- CHEBI:43470
- Gmelin:1998
- MolBase:1628
- PDBeChem:PI
- PDBeChem:PO4
- hydrogen(tetraoxidophosphate)(2-)
- hydrogenphosphate
- hydrogentetraoxophosphate(2-)
- hydrogentetraoxophosphate(V)
- hydroxidotrioxidophosphate(2-)
+ 0
+ C
+ InChI=1S/C
+ OKTJSMMVPCPJKN-UHFFFAOYSA-N
+ 12.01070
+ 12.00000
+ [C]
+ CHEBI:23009
+ CHEBI:3399
+ CAS:7440-44-0
+ KEGG:C06265
+ WebElements:C
+ carbon
chebi_ontology
- HPO4(2-)
- HYDROGENPHOSPHATE ION
- INORGANIC PHOSPHATE GROUP
- [P(OH)O3](2-)
- [PO3(OH)](2-)
- hydrogen phosphate
- phosphate
- CHEBI:43474
+ 6C
+ C
+ Carbon
+ Kohlenstoff
+ carbon
+ carbone
+ carbonium
+ carbono
+ CHEBI:27594
- hydrogenphosphate
+ carbon atom
-
-
- Gmelin:1998
- Gmelin
+
+
+ 6C
+ IUPAC
-
-
- hydrogen(tetraoxidophosphate)(2-)
+
+
+ C
IUPAC
-
-
-
- hydrogenphosphate
- IUPAC
-
+
+
+ C
+ KEGG_COMPOUND
-
-
- hydrogentetraoxophosphate(2-)
- IUPAC
-
+
+
+ Carbon
+ KEGG_COMPOUND
-
+
+
+ Kohlenstoff
+ ChEBI
+
+
+
+
+ carbon
+ ChEBI
+
+
+
+
+ carbone
+ ChEBI
+
+
+
+
+ carbonium
+ ChEBI
+
+
+
+
+ carbono
+ ChEBI
+
+
+
+
+ CAS:7440-44-0
+ ChemIDplus
+
+
+
+
+ CAS:7440-44-0
+ KEGG COMPOUND
+
+
+
- hydrogentetraoxophosphate(V)
+ carbon
IUPAC
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A cobalt group element atom that has atomic number 27.
+ 0
+ Co
+ InChI=1S/Co
+ GUTLYIVDDKVIGB-UHFFFAOYSA-N
+ 58.93320
+ 58.93319
+ [Co]
+ CHEBI:23335
+ CHEBI:3788
+ CAS:7440-48-4
+ KEGG:C00175
+ KEGG:C19171
+ PDBeChem:3CO
+ WebElements:Co
+ cobalt
+ chebi_ontology
+ 27Co
+ Co
+ Cobalt
+ Kobalt
+ cobalt
+ cobalto
+ cobaltum
+ CHEBI:27638
+
+ cobalt atom
+
+
+
+
+ CAS:7440-48-4
+ ChemIDplus
+
-
+
+
+ CAS:7440-48-4
+ KEGG COMPOUND
+
+
+
+
+ CAS:7440-48-4
+ NIST Chemistry WebBook
+
+
+
- hydroxidotrioxidophosphate(2-)
+ cobalt
IUPAC
-
+
- HPO4(2-)
+ 27Co
IUPAC
-
+
- HYDROGENPHOSPHATE ION
- PDBeChem
+ Co
+ IUPAC
-
+
- INORGANIC PHOSPHATE GROUP
- PDBeChem
+ Cobalt
+ KEGG_COMPOUND
-
+
- [P(OH)O3](2-)
- MolBase
+ Kobalt
+ NIST_Chemistry_WebBook
-
+
- [PO3(OH)](2-)
- IUPAC
+ cobalt
+ ChEBI
-
+
- hydrogen phosphate
+ cobalto
ChEBI
-
+
- phosphate
- UniProt
+ cobaltum
+ ChEBI
-
+
-
-
-
- A liquid that can dissolve other substances (solutes) without any change in their chemical composition.
- Wikipedia:Solvent
+
+
+
+
+
+
+
+
+ 0
+ V
+ InChI=1S/V
+ LEONUFNNVUYDNQ-UHFFFAOYSA-N
+ 50.94150
+ 50.94396
+ [V]
+ CHEBI:27274
+ CHEBI:9930
+ CAS:7440-62-2
+ KEGG:C06267
+ WebElements:V
+ vanadium
chebi_ontology
- Loesungsmittel
- solvant
- solvents
- CHEBI:46787
+ 23V
+ V
+ Vanadium
+ vanadio
+ vanadium
+ CHEBI:27698
- solvent
+ vanadium atom
-
-
- Loesungsmittel
- ChEBI
+
+
+ CAS:7440-62-2
+ ChemIDplus
-
-
- solvant
- ChEBI
+
+
+ CAS:7440-62-2
+ KEGG COMPOUND
-
-
- solvents
- ChEBI
+
+
+ CAS:7440-62-2
+ NIST Chemistry WebBook
-
-
-
-
-
-
-
- A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds.
- polar solvent
- polar solvents
- polar solvent
-
-
+
- polar solvent
+ vanadium
IUPAC
-
+
- polar solvents
- ChEBI
+ 23V
+ IUPAC
-
-
-
-
-
-
-
-
- A polar solvent that is capable of acting as a hydron (proton) donor.
- protogenic solvent
- protic solvent
-
-
-
- protogenic solvent
+
+
+ V
IUPAC
-
+
+
+
+
+ V
+ KEGG_COMPOUND
+
+
+
+
+ Vanadium
+ KEGG_COMPOUND
+
+
+
+
+ vanadio
+ ChEBI
+
+
+
+
+ vanadium
+ ChEBI
-
-
-
-
-
- protophilic solvent
-
-
-
-
-
-
-
-
-
- amphiprotic solvent
-
-
-
-
-
+
-
-
-
-
+
+
-
+
0
- H
- InChI=1S/H
- YZCKVEUIGOORGS-UHFFFAOYSA-N
- 1.00794
- 1.00783
- [H]
- CHEBI:24634
- CHEBI:49636
- WebElements:H
- hydrogen
+ W
+ InChI=1S/W
+ WFKWXMTUELFFGS-UHFFFAOYSA-N
+ 183.84000
+ 183.95093
+ [W]
+ CHEBI:27170
+ CHEBI:9779
+ CAS:7440-33-7
+ Gmelin:16317
+ KEGG:C00753
+ PDBeChem:W
+ WebElements:W
+ Tungsten
+ tungsten
+ wolfram
chebi_ontology
- 1H
- H
- Wasserstoff
- hidrogeno
- hydrogen
- hydrogene
- CHEBI:49637
+ 74W
+ W
+ Wolfram
+ tungsten atom
+ tungstene
+ tungsteno
+ volframio
+ wolframio
+ wolframium
+ CHEBI:27998
- hydrogen atom
+ tungsten
-
+
+
+ CAS:7440-33-7
+ ChemIDplus
+
+
+
+
+ CAS:7440-33-7
+ KEGG COMPOUND
+
+
+
+
+ CAS:7440-33-7
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16317
+ Gmelin
+
+
+
- hydrogen
+ Tungsten
+ KEGG_COMPOUND
+
+
+
+
+ tungsten
IUPAC
-
-
- 1H
+
+
+ wolfram
IUPAC
+
-
+
- H
+ 74W
IUPAC
-
+
- Wasserstoff
- ChEBI
+ W
+ IUPAC
-
+
- hidrogeno
- ChEBI
+ Wolfram
+ NIST_Chemistry_WebBook
-
+
- hydrogen
+ tungsten atom
ChEBI
-
+
- hydrogene
+ tungstene
ChEBI
-
-
-
-
-
-
-
- onium compound
-
-
-
-
-
-
-
-
- Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.
- onium cations
- onium cations
- onium ion
- onium ions
- onium cation
-
-
-
- onium cations
- IUPAC
-
+
+
+ tungsteno
+ ChEBI
-
+
- onium cations
+ volframio
ChEBI
-
+
- onium ion
+ wolframio
ChEBI
-
+
- onium ions
+ wolframium
ChEBI
-
-
-
-
-
-
-
+
-
-
+
+
+
-
-
+
+
- Any molecular entity that contains carbon.
- CHEBI:25700
- CHEBI:33244
+ A chromium group element atom that has atomic number 24.
+ 0
+ Cr
+ InChI=1S/Cr
+ VYZAMTAEIAYCRO-UHFFFAOYSA-N
+ 51.99610
+ 51.94051
+ [Cr]
+ CHEBI:23235
+ CHEBI:3678
+ CAS:7440-47-3
+ KEGG:C06268
+ WebElements:Cr
+ chromium
chebi_ontology
- organic compounds
- organic entity
- organic molecular entities
- CHEBI:50860
+ 24Cr
+ Chrom
+ Chromium
+ Cr
+ chrome
+ chromium
+ cromo
+ CHEBI:28073
- organic molecular entity
+ chromium atom
-
+
+
+ CAS:7440-47-3
+ ChemIDplus
+
+
+
+
+ CAS:7440-47-3
+ KEGG COMPOUND
+
+
+
+
+ chromium
+ IUPAC
+
+
+
+
- organic compounds
+ 24Cr
+ IUPAC
+
+
+
+
+ Chrom
+ ChemIDplus
+
+
+
+
+ Chromium
+ KEGG_COMPOUND
+
+
+
+
+ Cr
+ IUPAC
+
+
+
+
+ Cr
+ KEGG_COMPOUND
+
+
+
+
+ chrome
ChEBI
-
+
- organic entity
+ chromium
ChEBI
-
+
- organic molecular entities
+ cromo
ChEBI
-
-
-
-
- A role is particular behaviour which a material entity may exhibit.
- chebi_ontology
- CHEBI:50906
-
- role
-
-
-
-
-
-
-
-
-
- A role played by the molecular entity or part thereof within a chemical context.
- chebi_ontology
- CHEBI:51086
-
- chemical role
-
-
-
-
-
+
-
-
-
+
+
+
-
-
+
+
- Nitrogenous compounds
- nitrogen compounds
- nitrogen molecular entities
- nitrogen molecular entity
+
+
+
+
+
+
+ Chemical element (nickel group element atom) with atomic number 28.
+ 0
+ Ni
+ InChI=1S/Ni
+ PXHVJJICTQNCMI-UHFFFAOYSA-N
+ 58.69340
+ 57.93534
+ [Ni]
+ CHEBI:25515
+ CHEBI:7552
+ CAS:7440-02-0
+ Gmelin:16229
+ KEGG:C00291
+ PMID:12756270
+ PMID:14634084
+ PMID:14734778
+ PMID:15165199
+ PMID:19828094
+ PMID:20477134
+ PMID:22762130
+ PMID:23142754
+ PMID:23317102
+ PMID:23692032
+ PMID:23692035
+ PMID:23723488
+ PMID:23834453
+ PMID:23857010
+ PMID:23895079
+ PMID:23909687
+ PMID:9060994
+ PMID:9886425
+ Reaxys:4122946
+ WebElements:Ni
+ Wikipedia:Nickel
+ nickel
+ chebi_ontology
+ 28Ni
+ Ni
+ Nickel
+ Raney alloy
+ niccolum
+ nickel
+ niquel
+ CHEBI:28112
+
+ nickel atom
-
-
- Nitrogenous compounds
- KEGG_COMPOUND
+
+
+ CAS:7440-02-0
+ ChemIDplus
-
-
- nitrogen compounds
- ChEBI
+
+
+ CAS:7440-02-0
+ KEGG COMPOUND
-
-
- nitrogen molecular entities
- ChEBI
+
+
+ CAS:7440-02-0
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16229
+ Gmelin
+
+
+
+
+ PMID:12756270
+ Europe PMC
+
+
+
+
+ PMID:14634084
+ Europe PMC
+
+
+
+
+ PMID:14734778
+ Europe PMC
+
+
+
+
+ PMID:15165199
+ Europe PMC
+
+
+
+
+ PMID:19828094
+ Europe PMC
+
+
+
+
+ PMID:20477134
+ Europe PMC
+
+
+
+
+ PMID:22762130
+ Europe PMC
+
+
+
+
+ PMID:23142754
+ Europe PMC
-
-
-
-
-
-
-
- A biological role played by the molecular entity or part thereof within a biochemical context.
- chebi_ontology
- CHEBI:52206
-
- biochemical role
-
-
-
-
-
-
-
-
- chebi_ontology
- CHEBI:52211
-
- physiological role
-
-
-
-
-
-
-
-
-
- inorganic hydroxides
- inorganic hydroxy compound
-
-
+
+
+ PMID:23317102
+ Europe PMC
+
+
+
+
+ PMID:23692032
+ Europe PMC
+
+
+
+
+ PMID:23692035
+ Europe PMC
+
+
+
+
+ PMID:23723488
+ Europe PMC
+
+
+
+
+ PMID:23834453
+ Europe PMC
+
+
+
+
+ PMID:23857010
+ Europe PMC
+
+
+
+
+ PMID:23895079
+ Europe PMC
+
+
+
+
+ PMID:23909687
+ Europe PMC
+
+
+
+
+ PMID:9060994
+ Europe PMC
+
+
+
+
+ PMID:9886425
+ Europe PMC
+
+
+
+
+ Reaxys:4122946
+ Reaxys
+
+
+
+
+ nickel
+ IUPAC
+
+
+
+
- inorganic hydroxides
- ChEBI
+ 28Ni
+ IUPAC
-
-
-
-
-
-
-
- Compounds containing one or more phosphoric acid units.
- chebi_ontology
- CHEBI:59698
-
- phosphoric acids
-
-
-
-
-
-
-
-
- A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
- Chemische Substanz
- chemical substance
-
-
+
- Chemische Substanz
- ChEBI
+ Ni
+ IUPAC
-
-
-
-
-
-
-
- An organic molecular entity containing a single carbon atom (C1).
- one-carbon compounds
- one-carbon compound
-
-
+
- one-carbon compounds
+ Nickel
ChEBI
-
-
-
-
-
-
-
- Any organic molecular entity that is acidic and contains carbon in covalent linkage.
- chebi_ontology
- organic acids
- CHEBI:64709
-
- organic acid
-
-
+
- organic acids
- ChEBI
+ Raney alloy
+ ChemIDplus
-
-
-
-
-
-
-
-
- Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
- organic compound
- organic compounds
- organic molecules
- organic molecule
-
-
+
- organic compound
+ niccolum
ChEBI
-
+
- organic compounds
+ nickel
ChEBI
-
+
- organic molecules
+ niquel
ChEBI
-
+
-
-
- Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.
+
+
+
+
+
+
+
+
+
+ 0
+ P
+ InChI=1S/P
+ OAICVXFJPJFONN-UHFFFAOYSA-N
+ 30.97376
+ 30.97376
+ [P]
+ CHEBI:26080
+ CHEBI:8168
+ CAS:7723-14-0
+ Gmelin:16235
+ KEGG:C06262
+ WebElements:P
+ phosphorus
chebi_ontology
- eukaryotic metabolites
- CHEBI:75763
+ 15P
+ P
+ Phosphor
+ Phosphorus
+ fosforo
+ phosphore
+ phosphorus
+ CHEBI:28659
- eukaryotic metabolite
+ phosphorus atom
-
+
+
+ CAS:7723-14-0
+ ChemIDplus
+
+
+
+
+ CAS:7723-14-0
+ KEGG COMPOUND
+
+
+
+
+ Gmelin:16235
+ Gmelin
+
+
+
+
+ phosphorus
+ IUPAC
+
+
+
+
- eukaryotic metabolites
- ChEBI
+ 15P
+ IUPAC
-
-
-
-
-
-
-
- Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.
- CHEBI:77721
- CHEBI:77743
- chebi_ontology
- animal metabolites
- CHEBI:75767
-
- animal metabolite
-
-
+
- animal metabolites
- ChEBI
+ P
+ IUPAC
-
-
-
-
-
-
-
- Any animal metabolite produced during a metabolic reaction in mammals.
- CHEBI:77464
- CHEBI:77744
- chebi_ontology
- mammalian metabolites
- CHEBI:75768
-
- mammalian metabolite
-
-
+
- mammalian metabolites
+ P
+ KEGG_COMPOUND
+
+
+
+
+ Phosphor
ChEBI
-
-
-
-
-
-
-
- Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
- Mus musculus metabolite
- Mus musculus metabolites
- mouse metabolites
- mouse metabolite
-
-
+
- Mus musculus metabolite
+ Phosphorus
+ KEGG_COMPOUND
+
+
+
+
+ fosforo
ChEBI
-
+
- Mus musculus metabolites
+ phosphore
ChEBI
-
+
- mouse metabolites
+ phosphorus
ChEBI
-
+
-
-
- Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).
- CHEBI:76949
- CHEBI:76951
+
+
+
+
+
+
+
+
+ 0
+ Mo
+ InChI=1S/Mo
+ ZOKXTWBITQBERF-UHFFFAOYSA-N
+ 95.94000
+ 97.90541
+ [Mo]
+ CHEBI:25369
+ CHEBI:49750
+ CHEBI:6968
+ CAS:7439-98-7
+ Gmelin:16205
+ KEGG:C00150
+ WebElements:Mo
+ molybdenum
chebi_ontology
- S. cerevisiae metabolite
- S. cerevisiae metabolites
- S. cerevisiae secondary metabolite
- S. cerevisiae secondary metabolites
- Saccharomyces cerevisiae metabolites
- Saccharomyces cerevisiae secondary metabolites
- baker's yeast metabolite
- baker's yeast metabolites
- baker's yeast secondary metabolite
- baker's yeast secondary metabolites
- CHEBI:75772
+ 42Mo
+ Mo
+ Molybdaen
+ Molybdenum
+ molibdeno
+ molybdene
+ molybdenum
+ CHEBI:28685
- Saccharomyces cerevisiae metabolite
+ molybdenum atom
-
-
- S. cerevisiae metabolite
- ChEBI
+
+
+ CAS:7439-98-7
+ ChemIDplus
-
-
- S. cerevisiae metabolites
- ChEBI
+
+
+ CAS:7439-98-7
+ KEGG COMPOUND
-
-
- S. cerevisiae secondary metabolite
- ChEBI
+
+
+ CAS:7439-98-7
+ NIST Chemistry WebBook
-
-
- S. cerevisiae secondary metabolites
- ChEBI
+
+
+ Gmelin:16205
+ Gmelin
-
-
- Saccharomyces cerevisiae metabolites
- ChEBI
+
+
+ molybdenum
+ IUPAC
+
-
+
- Saccharomyces cerevisiae secondary metabolites
- ChEBI
+ 42Mo
+ IUPAC
-
+
- baker's yeast metabolite
- ChEBI
+ Mo
+ IUPAC
-
+
- baker's yeast metabolites
+ Molybdaen
ChEBI
-
+
- baker's yeast secondary metabolite
- ChEBI
+ Molybdenum
+ KEGG_COMPOUND
-
+
- baker's yeast secondary metabolites
+ molibdeno
ChEBI
-
-
-
-
-
-
-
- Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.
- prokaryotic metabolites
- prokaryotic metabolite
-
-
+
- prokaryotic metabolites
+ molybdene
ChEBI
-
-
-
-
-
-
-
- A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'.
- greenhouse gases
- greenhouse gas
-
-
+
- greenhouse gases
+ molybdenum
ChEBI
-
+
-
-
- Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.
- CHEBI:75765
- CHEBI:76947
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 0
+ Cu
+ InChI=1S/Cu
+ RYGMFSIKBFXOCR-UHFFFAOYSA-N
+ 63.54600
+ 62.92960
+ [Cu]
+ CHEBI:23376
+ CHEBI:3874
+ CAS:7440-50-8
+ Gmelin:16269
+ KEGG:C00070
+ WebElements:Cu
+ copper
chebi_ontology
- fungal metabolites
- CHEBI:76946
+ 29Cu
+ Copper
+ Cu
+ Kupfer
+ cobre
+ copper
+ cuivre
+ cuprum
+ CHEBI:28694
- fungal metabolite
+ copper atom
-
+
+
+ CAS:7440-50-8
+ ChemIDplus
+
+
+
+
+ CAS:7440-50-8
+ KEGG COMPOUND
+
+
+
+
+ Gmelin:16269
+ Gmelin
+
+
+
+
+ copper
+ IUPAC
+
+
+
+
- fungal metabolites
- ChEBI
+ 29Cu
+ IUPAC
-
-
-
-
-
-
-
- Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
- bacterial metabolite
-
-
-
-
-
-
-
-
- Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
- E.coli metabolite
- E.coli metabolites
- Escherichia coli metabolites
- Escherichia coli metabolite
-
-
+
- E.coli metabolite
- ChEBI
+ Copper
+ KEGG_COMPOUND
-
+
- E.coli metabolites
+ Cu
ChEBI
-
+
- Escherichia coli metabolites
- ChEBI
+ Cu
+ IUPAC
-
-
-
-
-
-
-
- Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
- CHEBI:75770
- CHEBI:77123
- chebi_ontology
- H. sapiens metabolite
- H. sapiens metabolites
- Homo sapiens metabolite
- Homo sapiens metabolites
- CHEBI:77746
-
- human metabolite
-
-
+
- H. sapiens metabolite
+ Kupfer
ChEBI
-
+
- H. sapiens metabolites
+ cobre
ChEBI
-
+
- Homo sapiens metabolite
+ copper
ChEBI
-
+
- Homo sapiens metabolites
+ cuivre
ChEBI
+
+
+
+ cuprum
+ IUPAC
+
-
+
-
-
- A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
- Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ An onium cation obtained by protonation of ammonia.
+ +1
+ H4N
+ InChI=1S/H3N/h1H3/p+1
+ QGZKDVFQNNGYKY-UHFFFAOYSA-O
+ 18.03850
+ 18.03383
+ [H][N+]([H])([H])[H]
+ CHEBI:22534
+ CHEBI:49783
+ CHEBI:7435
+ CAS:14798-03-9
+ Gmelin:84
+ KEGG:C01342
+ MetaCyc:AMMONIUM
+ MolBase:929
+ PDBeChem:NH4
+ PMID:11319011
+ PMID:11341317
+ PMID:12096804
+ PMID:14512268
+ PMID:14879753
+ PMID:16345391
+ PMID:16903292
+ PMID:17392693
+ PMID:18515490
+ PMID:19199063
+ PMID:19596600
+ PMID:19682559
+ PMID:19716251
+ PMID:21993530
+ PMID:22265469
+ PMID:22524020
+ PMID:22562341
+ PMID:22631217
+ Reaxys:16093784
+ Wikipedia:Ammonium
+ ammonium
+ azanium
chebi_ontology
- dietary component
- dietary components
- food components
- CHEBI:78295
+ Ammonium(1+)
+ NH4(+)
+ NH4+
+ [NH4](+)
+ ammonium cation
+ ammonium ion
+ CHEBI:28938
- food component
+ ammonium
-
-
- dietary component
+
+
+ CAS:14798-03-9
+ ChemIDplus
+
+
+
+
+ CAS:14798-03-9
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:84
+ Gmelin
+
+
+
+
+ PMID:11319011
+ Europe PMC
+
+
+
+
+ PMID:11341317
+ Europe PMC
+
+
+
+
+ PMID:12096804
+ Europe PMC
+
+
+
+
+ PMID:14512268
+ Europe PMC
+
+
+
+
+ PMID:14879753
+ Europe PMC
+
+
+
+
+ PMID:16345391
+ Europe PMC
+
+
+
+
+ PMID:16903292
+ Europe PMC
+
+
+
+
+ PMID:17392693
+ Europe PMC
+
+
+
+
+ PMID:18515490
+ Europe PMC
+
+
+
+
+ PMID:19199063
+ Europe PMC
+
+
+
+
+ PMID:19596600
+ Europe PMC
+
+
+
+
+ PMID:19682559
+ Europe PMC
+
+
+
+
+ PMID:19716251
+ Europe PMC
+
+
+
+
+ PMID:21993530
+ Europe PMC
+
+
+
+
+ PMID:22265469
+ Europe PMC
+
+
+
+
+ PMID:22524020
+ Europe PMC
+
+
+
+
+ PMID:22562341
+ Europe PMC
+
+
+
+
+ PMID:22631217
+ Europe PMC
+
+
+
+
+ Reaxys:16093784
+ Reaxys
+
+
+
+
+ ammonium
ChEBI
-
+
+
+ ammonium
+ IUPAC
+
+
+
+
+
+ azanium
+ IUPAC
+
+
+
+
- dietary components
- ChEBI
+ Ammonium(1+)
+ ChemIDplus
-
+
- food components
- ChEBI
+ NH4(+)
+ IUPAC
-
-
-
-
-
-
-
- Any inorganic anion with a valency of three.
- chebi_ontology
- trivalent inorganic anions
- CHEBI:79387
-
- trivalent inorganic anion
-
-
+
- trivalent inorganic anions
- ChEBI
+ NH4(+)
+ UniProt
-
-
-
-
-
-
-
- Any inorganic anion with a valency of two.
- chebi_ontology
- divalent inorganic anions
- CHEBI:79388
-
- divalent inorganic anion
-
-
+
- divalent inorganic anions
- ChEBI
+ NH4+
+ KEGG_COMPOUND
+
+
+
+
+ [NH4](+)
+ MolBase
+
+
+
+
+ ammonium cation
+ ChemIDplus
+
+
+
+
+ ammonium ion
+ PDBeChem
-
+
-
-
- Any inorganic anion with a valency of one.
+
+
+
+ 0
+ Al
+ InChI=1S/Al
+ XAGFODPZIPBFFR-UHFFFAOYSA-N
+ 26.98154
+ 26.98154
+ [Al]
+ CHEBI:22471
+ CHEBI:2616
+ CAS:7429-90-5
+ DrugBank:DB01370
+ Gmelin:16248
+ KEGG:C06264
+ WebElements:Al
+ aluminium
chebi_ontology
- monovalent inorganic anions
- CHEBI:79389
+ 13Al
+ Al
+ Aluminium
+ aluminio
+ aluminium
+ aluminum
+ CHEBI:28984
- monovalent inorganic anion
+ aluminium atom
-
+
+
+ CAS:7429-90-5
+ ChemIDplus
+
+
+
+
+ CAS:7429-90-5
+ KEGG COMPOUND
+
+
+
+
+ Gmelin:16248
+ Gmelin
+
+
+
+
+ aluminium
+ IUPAC
+
+
+
+
- monovalent inorganic anions
+ 13Al
+ IUPAC
+
+
+
+
+ Al
+ IUPAC
+
+
+
+
+ Al
+ KEGG_COMPOUND
+
+
+
+
+ Aluminium
ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae.
- chebi_ontology
- algal metabolites
- CHEBI:84735
-
- algal metabolite
-
-
+
- algal metabolites
+ Aluminium
+ KEGG_COMPOUND
+
+
+
+
+ aluminio
ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
- macroscopic spatial feature
- geographic feature
-
-
-
-
-
-
-
-
- A geographical feature associated with water.
- fluvial feature
- hydrographic feature
-
-
-
- A geographical feature associated with water.
- MA:ma
+
+
+ aluminium
+ ChEBI
-
+
- fluvial feature
- ADL:FTT
+ aluminum
+ NIST_Chemistry_WebBook
-
+
-
-
+
+
+
+
-
-
+
+
-
-
+
+
+
+
+
+
+
+
- An accumulation of water of varying size.
- hydrographic feature
- aquatic feature
- bodies of water
- body of water
- waterbody
- water body
+ +2
+ Fe
+ InChI=1S/Fe/q+2
+ CWYNVVGOOAEACU-UHFFFAOYSA-N
+ 55.84500
+ 55.93384
+ [Fe++]
+ CHEBI:13319
+ CHEBI:13321
+ CHEBI:21129
+ CHEBI:24876
+ CHEBI:34754
+ CHEBI:49599
+ CAS:15438-31-0
+ Gmelin:6845
+ KEGG:C14818
+ PDBeChem:FE2
+ Iron(2+)
+ iron(2+)
+ iron(2+) ion
+ iron(II) cation
+ chebi_ontology
+ FE (II) ION
+ Fe(2+)
+ Fe(II)
+ Fe2+
+ Ferrous ion
+ iron ion(2+)
+ CHEBI:29033
+
+ iron(2+)
-
-
- An accumulation of water of varying size.
- https://en.wikipedia.org/wiki/Body_of_water
+
+
+ CAS:15438-31-0
+ ChemIDplus
-
-
- hydrographic feature
- ADL:FTT
+
+
+ Gmelin:6845
+ Gmelin
-
+
- bodies of water
- Getty:TGN
+ Iron(2+)
+ KEGG_COMPOUND
-
+
- body of water
- ADL:FTT
+ iron(2+)
+ IUPAC
+
-
+
- body of water
- Getty:TGN
+ iron(2+) ion
+ IUPAC
+
+
+
+
+
+ iron(II) cation
+ IUPAC
+
+
+
+
+
+ FE (II) ION
+ PDBeChem
+
+
+
+
+ Fe(2+)
+ UniProt
+
+
+
+
+ Fe(II)
+ KEGG_COMPOUND
+
+
+
+
+ Fe2+
+ KEGG_COMPOUND
+
+
+
+
+ Ferrous ion
+ KEGG_COMPOUND
+
+
+
+
+ iron ion(2+)
+ ChemIDplus
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
-
-
+
+
+
+
+
+
+
+
- That part of the land in immediate contact with a body of water including the area between high and low water lines.
- coastal zone
- SHORE
- shore
- shoreface
- beach face
- foreshore
- inshore
- rivage
- seashore
- strand
- shore
+ A diatomic molecule containing covalently bonded hydrogen and fluorine atoms.
+ 0
+ FH
+ InChI=1S/FH/h1H
+ KRHYYFGTRYWZRS-UHFFFAOYSA-N
+ 20.00634
+ 20.00623
+ F[H]
+ CAS:7664-39-3
+ Drug_Central:4499
+ Gmelin:166
+ KEGG:C16487
+ Hydrogen fluoride
+ fluorane
+ fluoridohydrogen
+ hydrogen fluoride
+ chebi_ontology
+ Fluoride
+ Fluorwasserstoff
+ HF
+ Hydrogenfluorid
+ [HF]
+ fluorure d'hydrogene
+ hydrofluoric acid
+ CHEBI:29228
+
+ hydrogen fluoride
-
-
- That part of the land in immediate contact with a body of water including the area between high and low water lines.
- USGS:SDTS
+
+
+ CAS:7664-39-3
+ ChemIDplus
-
-
- coastal zone
- ADL:FTT
+
+
+ CAS:7664-39-3
+ KEGG COMPOUND
+
+
+
+
+ CAS:7664-39-3
+ NIST Chemistry WebBook
+
+
+
+
+ Drug_Central:4499
+ DrugCentral
+
+
+
+
+ Gmelin:166
+ Gmelin
-
+
- SHORE
- USGS:SDTS
+ Hydrogen fluoride
+ KEGG_COMPOUND
-
+
- shore
- Geonames:feature
+ fluorane
+ IUPAC
+
-
-
- shoreface
- USGS:SDTS
+
+
+ fluoridohydrogen
+ IUPAC
+
+
+
+
+
+ hydrogen fluoride
+ IUPAC
+
-
+
- beach face
- USGS:SDTS
+ Fluoride
+ KEGG_COMPOUND
-
+
- foreshore
- USGS:SDTS
+ Fluorwasserstoff
+ ChEBI
-
+
- inshore
- USGS:SDTS
+ HF
+ IUPAC
-
+
- rivage
- USGS:SDTS
+ Hydrogenfluorid
+ ChEBI
-
+
- seashore
- USGS:SDTS
+ [HF]
+ IUPAC
-
+
- strand
- USGS:SDTS
+ fluorure d'hydrogene
+ ChEBI
+
+
+
+
+ hydrofluoric acid
+ ChemIDplus
-
+
-
+
+
+ 0
+ Au
+ InChI=1S/Au
+ PCHJSUWPFVWCPO-UHFFFAOYSA-N
+ 196.96655
+ 196.96657
+ [Au]
+ CAS:7440-57-5
+ WebElements:Au
+ gold
+ chebi_ontology
+ 79Au
+ Au
+ Gold
+ aurum
+ gold
+ or
+ oro
+ CHEBI:29287
+
+ gold atom
+
+
+
+
+ CAS:7440-57-5
+ ChemIDplus
+
+
+
+
+ gold
+ IUPAC
+
+
+
+
+
+ 79Au
+ IUPAC
+
+
+
+
+ Au
+ IUPAC
+
+
+
+
+ Gold
+ ChEBI
+
+
+
+
+ aurum
+ IUPAC
+
+
+
+
+ gold
+ ChEBI
+
+
+
+
+ or
+ ChEBI
+
+
+
+
+ oro
+ ChEBI
+
-
+
-
-
+
+
+
-
-
+
+
- An environmental material primarily composed of dihydrogen oxide in its liquid form.
- water
+
+
+
+
+
+
+ -1
+ H2N
+ InChI=1S/H2N/h1H2/q-1
+ HYGWNUKOUCZBND-UHFFFAOYSA-N
+ 16.02262
+ 16.01927
+ [H][N-][H]
+ amide
+ azanide
+ dihydridonitrate(1-)
+ chebi_ontology
+ NH2(-)
+ CHEBI:29337
+
+ azanide
-
-
- An environmental material primarily composed of dihydrogen oxide in its liquid form.
- MA:ma
+
+
+ amide
+ IUPAC
+
+
+
+
+
+ azanide
+ IUPAC
+
+
+
+
+
+ dihydridonitrate(1-)
+ IUPAC
+
+
+
+
+
+ NH2(-)
+ IUPAC
-
-
-
-
-
-
-
-
-
-
-
-
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
-
-
+
+
- A material entity which determines an environmental system.
- environmental feature
+ A divalent inorganic anion resulting from the removal of two protons from ammonia.
+ -2
+ HN
+ InChI=1S/HN/h1H/q-2
+ DZQYTNGKSBCIOE-UHFFFAOYSA-N
+ 15.01468
+ 15.01200
+ [N--][H]
+ azanediide
+ hydridonitrate(2-)
+ chebi_ontology
+ NH(2-)
+ imide
+ CHEBI:29340
+
+ hydridonitrate(2-)
-
-
- A material entity which determines an environmental system.
- DOI:10.1186/2041-1480-4-43
- NM:nm
- ORCID:0000-0002-4366-3088
+
+
+ azanediide
+ IUPAC
+
+
+
+
+
+ hydridonitrate(2-)
+ IUPAC
+
+
+
+
+
+ NH(2-)
+ IUPAC
+
+
+
+
+ imide
+ IUPAC
-
+
-
-
- A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
- A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.
- portion of environmental material
- environmental material
+
+
+ 0
+ Li
+ InChI=1S/Li
+ WHXSMMKQMYFTQS-UHFFFAOYSA-N
+ 6.94100
+ 7.01600
+ [Li]
+ CAS:7439-93-2
+ WebElements:Li
+ lithium
+ chebi_ontology
+ 3Li
+ Li
+ Lithium
+ lithium
+ litio
+ CHEBI:30145
+
+ lithium atom
-
-
- A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
- DOI:10.1186/2041-1480-4-43
- MA:ma
- ORCID:0000-0002-4366-3088
- URL:http://ontology.buffalo.edu/smith/articles/niches.html
+
+
+ CAS:7439-93-2
+ NIST Chemistry WebBook
-
-
- A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.
- DOI:10.1186/2041-1480-4-43
- MA:ma
- ORCID:0000-0002-4366-3088
- URL:http://ontology.buffalo.edu/smith/articles/niches.html
+
+
+ lithium
+ IUPAC
+
+
+
+
+
+ 3Li
+ IUPAC
+
+
+
+
+ Li
+ IUPAC
+
+
+
+
+ Lithium
+ ChEBI
+
+
+
+
+ lithium
+ ChEBI
+
+
+
+
+ litio
+ ChEBI
-
+
-
-
- A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
- surface layer
+
+
+ +2
+ 0.00000
+ [*++]
+ CHEBI:23856
+ CHEBI:4665
+ KEGG:C00572
+ chebi_ontology
+ Divalent cation
+ divalent inorganic cations
+ monoatomic dications
+ CHEBI:30412
+
+ monoatomic dication
-
-
- A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
- URL:http://www.merriam-webster.com/dictionary/surface
+
+
+ Divalent cation
+ KEGG_COMPOUND
+
+
+
+
+ divalent inorganic cations
+ ChEBI
+
+
+
+
+ monoatomic dications
+ ChEBI
-
+
-
-
- A system which has the disposition to environ one or more material entities.
- environment
- environmental system
+
+
+ A metallic element first identified and named from the brilliant indigo (Latin indicum) blue line in its flame spectrum.
+ 0
+ In
+ InChI=1S/In
+ APFVFJFRJDLVQX-UHFFFAOYSA-N
+ 114.81800
+ 114.90388
+ [In]
+ CAS:7440-74-6
+ Gmelin:16297
+ WebElements:In
+ indium
+ chebi_ontology
+ 49In
+ In
+ Indium
+ indio
+ indium
+ CHEBI:30430
+
+ indium atom
-
-
- A system which has the disposition to environ one or more material entities.
- DOI:10.1186/2041-1480-4-43
+
+
+ CAS:7440-74-6
+ ChemIDplus
+
+
+
+
+ CAS:7440-74-6
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16297
+ Gmelin
+
+
+
+
+ indium
+ IUPAC
+
+
+
+
+
+ 49In
+ IUPAC
+
+
+
+
+ In
+ IUPAC
+
+
+
+
+ Indium
+ ChEBI
+
+
+
+
+ indio
+ ChEBI
+
+
+
+
+ indium
+ ChEBI
-
+
-
-
-
-
-
-
-
-
- A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
- layer
+
+
+ A metallic element first identified and named from the brilliant green line in its flame spectrum (from Greek thetaalphalambdalambdaomicronsigma, a green shoot).
+ 0
+ Tl
+ InChI=1S/Tl
+ BKVIYDNLLOSFOA-UHFFFAOYSA-N
+ 204.38330
+ 204.97443
+ [Tl]
+ CAS:7440-28-0
+ Gmelin:16308
+ WebElements:Tl
+ thallium
+ chebi_ontology
+ 81Tl
+ Tl
+ talio
+ CHEBI:30440
+
+ thallium
-
-
- A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
- Wiktionary:layer
+
+
+ CAS:7440-28-0
+ ChemIDplus
+
+
+
+
+ CAS:7440-28-0
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16308
+ Gmelin
+
+
+
+
+ thallium
+ IUPAC
+
+
+
+
+
+ 81Tl
+ IUPAC
+
+
+
+
+ Tl
+ IUPAC
+
+
+
+
+ talio
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An environment whose dynamics are strongly influenced by water.
- aquatic environment
+
+
+
+ 0
+ Te
+ InChI=1S/Te
+ PORWMNRCUJJQNO-UHFFFAOYSA-N
+ 127.60000
+ 129.90622
+ [Te]
+ CAS:13494-80-9
+ Gmelin:16309
+ WebElements:Te
+ tellurium
+ chebi_ontology
+ 52Te
+ Te
+ Tellur
+ tellure
+ tellurium
+ teluro
+ CHEBI:30452
+
+ tellurium atom
+
+
+
+ CAS:13494-80-9
+ ChemIDplus
+
+
+
+
+ CAS:13494-80-9
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16309
+ Gmelin
+
+
+
+
+ tellurium
+ IUPAC
+
+
+
+
+
+ 52Te
+ IUPAC
+
+
+
+
+ Te
+ IUPAC
+
+
+
+
+ Tellur
+ ChEBI
+
+
+
+
+ tellure
+ ChEBI
+
+
+
+
+ tellurium
+ ChEBI
+
+
+
+
+ teluro
+ ChEBI
+
-
+
-
-
+
+
+
-
-
+
+
- A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with atmosphere or outer space.
- planetary surface
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
- A layer in a water mass, itself composed primarily of water.
- aquatic layer
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
- vegetation layer
-
-
-
-
-
-
-
-
-
- Land is a planetary surface that is not covered by liquid.
- ground
- land
+ Alkaline earth metal atom with atomic number 4.
+ 0
+ Be
+ InChI=1S/Be
+ ATBAMAFKBVZNFJ-UHFFFAOYSA-N
+ 9.01218
+ 9.01218
+ [Be]
+ CAS:7440-41-7
+ Gmelin:16265
+ PMID:10858219
+ PMID:11897645
+ PMID:14643414
+ PMID:16951350
+ PMID:18250483
+ PMID:18768897
+ PMID:24912188
+ Reaxys:14617151
+ WebElements:Be
+ beryllium
+ chebi_ontology
+ 4Be
+ Be
+ Beryllium
+ berilio
+ beryllium
+ CHEBI:30501
+
+ beryllium atom
-
-
- Land is a planetary surface that is not covered by liquid.
- Adpated from https://en.wikipedia.org/wiki/Planetary_surface
+
+
+ CAS:7440-41-7
+ ChemIDplus
-
-
-
-
-
-
-
-
- Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
- space
- outer space
-
-
-
- Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
- https://en.wikipedia.org/wiki/Outer_space
+
+
+ CAS:7440-41-7
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16265
+ Gmelin
+
+
+
+
+ PMID:10858219
+ Europe PMC
+
+
+
+
+ PMID:11897645
+ Europe PMC
+
+
+
+
+ PMID:14643414
+ Europe PMC
+
+
+
+
+ PMID:16951350
+ Europe PMC
+
+
+
+
+ PMID:18250483
+ Europe PMC
+
+
+
+
+ PMID:18768897
+ Europe PMC
+
+
+
+
+ PMID:24912188
+ Europe PMC
+
+
+
+
+ Reaxys:14617151
+ Reaxys
+
+
+
+
+ beryllium
+ IUPAC
+
+
+
+
+
+ 4Be
+ IUPAC
+
+
+
+
+ Be
+ IUPAC
+
+
+
+
+ Beryllium
+ ChEBI
+
+
+
+
+ berilio
+ ChEBI
+
+
+
+
+ beryllium
+ ChEBI
-
+
-
-
- A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
- See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work.
- Subclasses will be added by inference.
- human dwelling
+
+
+ 0
+ Ag
+ InChI=1S/Ag
+ BQCADISMDOOEFD-UHFFFAOYSA-N
+ 107.86820
+ 106.90509
+ [Ag]
+ CAS:7440-22-4
+ WebElements:Ag
+ silver
+ chebi_ontology
+ 47Ag
+ Ag
+ Silber
+ argent
+ argentum
+ plata
+ silver
+ CHEBI:30512
+
+ silver atom
-
-
- A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
- https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015
+
+
+ CAS:7440-22-4
+ ChemIDplus
+
+
+
+
+ silver
+ IUPAC
+
+
+
+
+
+ 47Ag
+ IUPAC
+
+
+
+
+ Ag
+ IUPAC
+
+
+
+
+ Silber
+ ChemIDplus
+
+
+
+
+ argent
+ ChEBI
+
+
+
+
+ argentum
+ IUPAC
+
+
+
+
+ plata
+ ChEBI
+
+
+
+
+ silver
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
- gas
- gaseous environmental material
+
+
+
+ 0
+ Sb
+ InChI=1S/Sb
+ WATWJIUSRGPENY-UHFFFAOYSA-N
+ 121.76000
+ 120.90381
+ [Sb]
+ WebElements:Sb
+ antimony
+ chebi_ontology
+ 51Sb
+ Antimon
+ Sb
+ antimoine
+ antimonio
+ antimony
+ stibium
+ CHEBI:30513
+
+ antimony atom
-
-
- A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
- http://www.merriam-webster.com/dictionary/gas
+
+
+ antimony
+ IUPAC
+
+
+
+
+
+ 51Sb
+ IUPAC
+
+
+
+
+ Antimon
+ ChEBI
+
+
+
+
+ Sb
+ IUPAC
+
+
+
+
+ antimoine
+ ChEBI
+
+
+
+
+ antimonio
+ ChEBI
+
+
+
+
+ antimony
+ ChEBI
+
+
+
+
+ stibium
+ IUPAC
-
+
-
-
- An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
- celestial body
- astronomical body
+
+
+ 0
+ Cs
+ InChI=1S/Cs
+ TVFDJXOCXUVLDH-UHFFFAOYSA-N
+ 132.90545
+ 132.90545
+ [Cs]
+ WebElements:Cs
+ caesium
+ chebi_ontology
+ 55Cs
+ Caesium
+ Cs
+ Zaesium
+ caesium
+ cesio
+ cesium
+ CHEBI:30514
+
+ caesium atom
-
-
- An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
- https://en.wikipedia.org/wiki/Astronomical_object
+
+
+ caesium
+ IUPAC
+
+
+
+
+
+ 55Cs
+ IUPAC
+
+
+
+
+ Caesium
+ ChEBI
+
+
+
+
+ Cs
+ IUPAC
+
+
+
+
+ Zaesium
+ ChEBI
+
+
+
+
+ caesium
+ ChEBI
+
+
+
+
+ cesio
+ ChEBI
+
+
+
+
+ cesium
+ ChEBI
+
+
+
+
+ cesium
+ IUPAC
-
+
-
-
- A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
- planet
+
+
+ 0
+ Ba
+ InChI=1S/Ba
+ DSAJWYNOEDNPEQ-UHFFFAOYSA-N
+ 137.32700
+ 137.90525
+ [Ba]
+ WebElements:Ba
+ barium
+ chebi_ontology
+ 56Ba
+ Ba
+ Barium
+ bario
+ barium
+ baryum
+ CHEBI:32594
+
+ barium atom
-
-
- A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
- http://solarsystem.nasa.gov/planets/whatisaplanet
- https://en.wikipedia.org/wiki/Planet
+
+
+ barium
+ IUPAC
+
-
-
-
-
+
+
+
+ 56Ba
+ IUPAC
+
+
+
+
+ Ba
+ IUPAC
+
+
+
+
+ Barium
+ ChEBI
+
+
+
+
+ bario
+ ChEBI
+
+
+
+
+ barium
+ ChEBI
+
+
+
+
+ baryum
+ ChEBI
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- 1
-
-
-
- An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
- celestial object
- astronomical object
+
+
+
+
+
+
+ Intended use of the molecular entity or part thereof by humans.
+ chebi_ontology
+ CHEBI:33232
+
+ application
+
+
+
+
+
+
+
+
+ A particle not known to have substructure.
+ elementary particle
+ chebi_ontology
+ elementary particles
+ CHEBI:33233
+
+ fundamental particle
-
-
- An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
- https://en.wikipedia.org/wiki/Astronomical_object
+
+
+ elementary particle
+ IUPAC
+
+
+
+
+
+ elementary particles
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A material part of an astronomical body.
- astronomical body part
+
+
+ A monoatomic entity is a molecular entity consisting of a single atom.
+ chebi_ontology
+ atomic entity
+ monoatomic entities
+ CHEBI:33238
+
+ monoatomic entity
+
+
+
+ atomic entity
+ ChEBI
+
+
+
+
+ monoatomic entities
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
-
-
+
+
- An environmental material which is in a solid state.
- solid environmental material
+ chebi_ontology
+ oxoacid derivatives
+ CHEBI:33241
+
+ oxoacid derivative
+
+
+
+ oxoacid derivatives
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An environmental material which is in a liquid state.
- liquid environmental material
+
+
+
+ chebi_ontology
+ inorganic hydrides
+ CHEBI:33242
+
+ inorganic hydride
+
+
+
+ inorganic hydrides
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
- An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
- hydrosphere
+
+
+ Any substituent group which does not contain carbon.
+ chebi_ontology
+ inorganic groups
+ CHEBI:33246
+
+ inorganic group
-
-
- An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
- https://en.wikipedia.org/wiki/Hydrosphere
+
+
+ inorganic groups
+ ChEBI
-
+
-
-
+
+
-
-
+
+
+
+
+
+
+
+
- A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
- mass liquid flow
+ A chemical entity constituting the smallest component of an element having the chemical properties of the element.
+ CHEBI:22671
+ CHEBI:23907
+ atom
+ chebi_ontology
+ atome
+ atomo
+ atoms
+ atomus
+ element
+ elements
+ CHEBI:33250
+
+ atom
-
-
- A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
- https://en.wikipedia.org/wiki/Wind
+
+
+ atom
+ IUPAC
+
+
+
+
+
+ atome
+ IUPAC
+
+
+
+
+ atomo
+ IUPAC
+
+
+
+
+ atoms
+ ChEBI
+
+
+
+
+ atomus
+ ChEBI
+
+
+
+
+ element
+ ChEBI
+
+
+
+
+ elements
+ ChEBI
-
+
-
-
-
+
+
-
-
+
+
- A process during which a volume of water is transported due to a disequilibria in physical forces.
- water flow process
+ A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
+ nucleus
+ chebi_ontology
+ Atomkern
+ Kern
+ noyau
+ noyau atomique
+ nuclei
+ nucleo
+ nucleo atomico
+ nucleus atomi
+ CHEBI:33252
+
+ atomic nucleus
+
+
+
+ nucleus
+ IUPAC
+
+
+
+
+
+ Atomkern
+ ChEBI
+
+
+
+
+ Kern
+ ChEBI
+
+
+
+
+ noyau
+ IUPAC
+
+
+
+
+ noyau atomique
+ ChEBI
+
+
+
+
+ nuclei
+ ChEBI
+
+
+
+
+ nucleo
+ IUPAC
+
+
+
+
+ nucleo atomico
+ ChEBI
+
+
+
+
+ nucleus atomi
+ ChEBI
+
-
+
-
-
- An environmental system which is determined by materials bearing roughly homogeneous qualities.
- environmental system determined by a quality
+
+
+
+ Heavy nuclear particle: proton or neutron.
+ nucleon
+ chebi_ontology
+ Nukleon
+ Nukleonen
+ nucleons
+ CHEBI:33253
+
+ nucleon
+
+
+
+ nucleon
+ IUPAC
+
+
+
+
+ nucleon
+ IUPAC
+
+
+
+
+
+ Nukleon
+ ChEBI
+
+
+
+
+ Nukleonen
+ ChEBI
+
+
+
+
+ nucleons
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- An environmental system within which an environmental material strongly influences the system's composition and properties.
- environmental system determined by a material
+
+
+ A molecular entity all atoms of which have the same atomic number.
+ chebi_ontology
+ homoatomic entity
+ homoatomic molecular entities
+ homoatomic molecular entity
+ CHEBI:33259
+
+ elemental molecular entity
+
+
+
+ homoatomic entity
+ ChEBI
+
+
+
+
+ homoatomic molecular entities
+ ChEBI
+
+
+
+
+ homoatomic molecular entity
+ ChEBI
+
-
+
-
-
- ecosystem
+
+
+
+
+ elemental oxygen
-
+
-
-
- An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure.
- ice
+
+
+ diatomic oxygen
-
+
-
-
- A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
- geodiversity
+
+
+ diatomic nitrogen
-
-
-
- A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
- https://en.wikipedia.org/wiki/Geodiversity
-
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- The surface layer of a volume of water.
- surface of a body of water
- water body surface
- water surface
+
+
+
+ elemental nitrogen
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A layer which is primarily composed of some liquid material.
- liquid layer
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.
- solid layer
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A geographic feature which is primarily composed of a continuous volume of liquid water held in shape or sustained by an environmental process.
- hydroform
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A liquid surface layer which is in contact with air.
- liquid surface layer
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- A liquid surface layer which is in contact with air.
- solid surface layer
+
+
+
+ An anion consisting of more than one atom.
+ chebi_ontology
+ polyatomic anions
+ CHEBI:33273
+
+ polyatomic anion
+
+
+
+ polyatomic anions
+ ChEBI
+
-
+
-
-
- A material transport process during which a volume of material is displaced due to a disequilirium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
- advective transport
- advective transport process
+
+
+ A nutrient is a food component that an organism uses to survive and grow.
+ chebi_ontology
+ nutrients
+ CHEBI:33284
+
+ nutrient
-
-
- A material transport process during which a volume of material is displaced due to a disequilirium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
- https://en.wikipedia.org/wiki/Advection
- https://en.wikipedia.org/wiki/Intensive_and_extensive_properties
+
+
+ nutrients
+ ChEBI
-
-
-
-
-
-
-
+
-
-
- A process in which includes the components of an environmental system as participants.
- environmental system process
+
+
+ heteroorganic entity
-
+
-
-
- An environmental process which has water - in any of its states - as a participant.
- hydrological process
+
+
+ An agrochemical is a substance that is used in agriculture or horticulture.
+ Wikipedia:Agrochemical
+ chebi_ontology
+ agrichemical
+ agrichemicals
+ agricultural chemicals
+ agrochemicals
+ CHEBI:33286
+
+ agrochemical
+
+
+
+ agrichemical
+ ChEBI
+
+
+
+
+ agrichemicals
+ ChEBI
+
+
+
+
+ agricultural chemicals
+ ChEBI
+
+
+
+
+ agrochemicals
+ ChEBI
+
-
+
-
-
- A process during which material is displaced from its original location and transported either to a new location or back to the original location.
- material transport process
+
+
+ A fertilizer is any substance that is added to soil or water to assist the growth of plants.
+ chebi_ontology
+ fertiliser
+ fertilizers
+ CHEBI:33287
+
+ fertilizer
+
+
+
+ fertiliser
+ ChEBI
+
+
+
+
+ fertilizers
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
+
+
-
-
+
+
- An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event.
- 2010-09-21T02:43:50Z
- exposure_stressor
- ExO:0000000
- exposure stressor
+ A molecular entity containing one or more atoms of an alkali metal.
+ chebi_ontology
+ alkali metal molecular entities
+ CHEBI:33296
+
+ alkali metal molecular entity
-
-
- An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event.
- CTD:curators
+
+
+ alkali metal molecular entities
+ ChEBI
-
+
-
+
+
-
-
+
+
- An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event.
- cmattin
- 2010-09-21T02:45:36Z
- exposure recipient
- exposure target
- exposure_receptor
- ExO:0000001
- exposure_receptor
+ lithium molecular entity
+ chebi_ontology
+ lithium compounds
+ lithium molecular entities
+ CHEBI:33298
+
+ lithium molecular entity
-
-
- An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event.
- CTD:curators
+
+
+ lithium molecular entity
+ ChEBI
+
+
+
+
+ lithium compounds
+ ChEBI
+
+
+
+
+ lithium molecular entities
+ ChEBI
-
+
-
-
-
-
-
-
-
-
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
- An interaction between an exposure stressor and an exposure_receptor.
- cmattin
- 2010-09-21T02:47:00Z
- exposure_event
- ExO:0000002
- exposure event
+ An alkaline earth molecular entity is a molecular entity containing one or more atoms of an alkaline earth metal.
+ alkaline earth molecular entity
+ chebi_ontology
+ alkaline earth compounds
+ alkaline earth molecular entities
+ alkaline-earth compounds
+ CHEBI:33299
+
+ alkaline earth molecular entity
-
-
- An interaction between an exposure stressor and an exposure_receptor.
- CTD:curators
+
+
+ alkaline earth molecular entity
+ ChEBI
+
+
+
+
+ alkaline earth compounds
+ ChEBI
+
+
+
+
+ alkaline earth molecular entities
+ ChEBI
+
+
+
+
+ alkaline-earth compounds
+ ChEBI
-
+
-
- Any agent, entity, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event.
- 2021-10-20T17:44:37Z
-
- exposure stimulus
+
+
+ Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
+ pnictogens
+ chebi_ontology
+ group 15 elements
+ group V elements
+ nitrogenoideos
+ nitrogenoides
+ pnictogene
+ pnictogenes
+ CHEBI:33300
+
+ pnictogen
+
+
+
+ pnictogens
+ IUPAC
+
+
+
+
+
+ group 15 elements
+ ChEBI
+
+
+
+
+ group V elements
+ ChEBI
+
+
+
+
+ nitrogenoideos
+ ChEBI
+
+
+
+
+ nitrogenoides
+ ChEBI
+
+
+
+
+ pnictogene
+ ChEBI
+
+
+
+
+ pnictogenes
+ ChEBI
+
-
+
-
-
- The earth, all of the organisms living on it, and all of the environmental factors, which act on the organisms. The volume of area where biological matter can exist, slightly above, on or below ground level.
- cmattin
- 2011-01-10T09:26:27Z
- exposure_receptor
- ExO:0000030
- ecosphere
+
+
+
+ 0
+ Bi
+ InChI=1S/Bi
+ JCXGWMGPZLAOME-UHFFFAOYSA-N
+ 208.98038
+ 208.98040
+ [Bi]
+ CAS:7440-69-9
+ WebElements:Bi
+ bismuth
+ chebi_ontology
+ 83Bi
+ Bi
+ Bismut
+ Wismut
+ bismuth
+ bismuto
+ CHEBI:33301
+
+ bismuth atom
-
-
- The earth, all of the organisms living on it, and all of the environmental factors, which act on the organisms. The volume of area where biological matter can exist, slightly above, on or below ground level.
- XCTD:curators
+
+
+ CAS:7440-69-9
+ ChemIDplus
+
+
+
+
+ bismuth
+ IUPAC
+
+
+
+
+
+ 83Bi
+ IUPAC
+
+
+
+
+ Bi
+ IUPAC
+
+
+
+
+ Bismut
+ ChEBI
+
+
+
+
+ Wismut
+ ChEBI
+
+
+
+
+ bismuth
+ ChEBI
+
+
+
+
+ bismuto
+ ChEBI
-
+
-
+
+
-
-
+
+
- MERGED DEFINITION:\nTARGET DEFINITION: An exposure_receptor that is the global ecological system integrating all living beings and their relationships, including their interaction with the elements of the lithosphere, hydrosphere and atmosphere.\n--------------------\nSOURCE DEFINITION: An exposure_receptor that is the part of the environment that is made or modified by humans for use in human activities and human habitats.
- cmattin
- 2011-01-10T09:27:26Z
- ExO:0000032
- anthrosphere
- exposure_receptor
- ExO:0000031
- biosphere
+ A p-block molecular entity containing any pnictogen.
+ pnictogen molecular entity
+ chebi_ontology
+ pnictogen molecular entities
+ CHEBI:33302
+
+ pnictogen molecular entity
-
-
- MERGED DEFINITION:\nTARGET DEFINITION: An exposure_receptor that is the global ecological system integrating all living beings and their relationships, including their interaction with the elements of the lithosphere, hydrosphere and atmosphere.\n--------------------\nSOURCE DEFINITION: An exposure_receptor that is the part of the environment that is made or modified by humans for use in human activities and human habitats.
- GOC:hjd
+
+
+ pnictogen molecular entity
+ ChEBI
+
+
+
+
+ pnictogen molecular entities
+ ChEBI
-
+
-
-
-
-
-
-
-
-
- An exposure_receptor that is a group of Homo sapiens inhabiting a given area.
- cmattin
- 2011-01-10T09:28:02Z
- exposure_receptor
- ExO:0000033
- human population
-
-
-
-
- An exposure_receptor that is a group of Homo sapiens inhabiting a given area.
- CTD:curators
-
-
-
-
-
-
-
-
- An individual attribute that is the usual or principal work or business of an individual.
- cmattin
- 2011-01-10T09:28:22Z
- human_attribute
- ExO:0000034
- occupation
+
+
+ Any p-block element belonging to the group 16 family of the periodic table.
+ PMID:17084588
+ chalcogen
+ chalcogens
+ chebi_ontology
+ Chalkogen
+ Chalkogene
+ anfigeno
+ anfigenos
+ calcogeno
+ calcogenos
+ chalcogene
+ chalcogenes
+ group 16 elements
+ group VI elements
+ CHEBI:33303
+
+ chalcogen
-
-
- An individual attribute that is the usual or principal work or business of an individual.
- CTD:curators
+
+
+ PMID:17084588
+ Europe PMC
+
+
+
+
+ chalcogen
+ IUPAC
+
+
+
+
+
+ chalcogens
+ IUPAC
+
+
+
+
+
+ Chalkogen
+ ChEBI
+
+
+
+
+ Chalkogene
+ ChEBI
+
+
+
+
+ anfigeno
+ ChEBI
+
+
+
+
+ anfigenos
+ ChEBI
+
+
+
+
+ calcogeno
+ ChEBI
+
+
+
+
+ calcogenos
+ ChEBI
+
+
+
+
+ chalcogene
+ ChEBI
+
+
+
+
+ chalcogenes
+ ChEBI
+
+
+
+
+ group 16 elements
+ ChEBI
+
+
+
+
+ group VI elements
+ ChEBI
-
+
-
-
+
+
-
-
+
+
- Being or characteristic of a single thing or person.
- cmattin
- 2011-01-10T09:30:56Z
- exposure_receptor
- ExO:0000042
- human individual
+ Any p-block molecular entity containing a chalcogen.
+ chalcogen molecular entity
+ chebi_ontology
+ chalcogen compounds
+ chalcogen molecular entities
+ CHEBI:33304
+
+ chalcogen molecular entity
-
-
- Being or characteristic of a single thing or person.
- CTD:curators
+
+
+ chalcogen molecular entity
+ ChEBI
+
+
+
+
+ chalcogen compounds
+ ChEBI
+
+
+
+
+ chalcogen molecular entities
+ ChEBI
-
+
-
-
-
+
+
-
-
+
+
- An attribute describing some aspect of an individual or human population.
- cmattin
- 2011-01-10T09:30:27Z
- human_attribute
- ExO:0000089
- human attribute
+ tellurium molecular entity
+ chebi_ontology
+ tellurium compounds
+ tellurium molecular entities
+ CHEBI:33305
+
+ tellurium molecular entity
-
-
- An attribute describing some aspect of an individual or human population.
- CTD:curators
+
+
+ tellurium molecular entity
+ ChEBI
+
+
+
+
+ tellurium compounds
+ ChEBI
+
+
+
+
+ tellurium molecular entities
+ ChEBI
-
+
-
-
- A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure.
- foodon product type
+
+
+ group 14 elements
+ chebi_ontology
+ carbon group element
+ carbon group elements
+ carbonoides
+ cristallogene
+ cristallogenes
+ group IV elements
+ CHEBI:33306
+
+ carbon group element atom
+
+
+
+ group 14 elements
+ IUPAC
+
+
+
+
+
+ carbon group element
+ ChEBI
+
+
+
+
+ carbon group elements
+ ChEBI
+
+
+
+
+ carbonoides
+ ChEBI
+
+
+
+
+ cristallogene
+ ChEBI
+
+
+
+
+ cristallogenes
+ ChEBI
+
+
+
+
+ group IV elements
+ ChEBI
+
-
+
-
-
- food component product
+
+
+
+
+ noble gas
+ noble gases
+ chebi_ontology
+ Edelgas
+ Edelgase
+ gas noble
+ gases nobles
+ gaz noble
+ gaz nobles
+ group 18 elements
+ group VIII elements
+ inert gases
+ noble gas
+ rare gases
+ CHEBI:33309
+
+ noble gas atom
+
+
+
+ noble gas
+ IUPAC
+
+
+
+
+
+ noble gases
+ IUPAC
+
+
+
+
+
+ Edelgas
+ ChEBI
+
+
+
+
+ Edelgase
+ ChEBI
+
+
+
+
+ gas noble
+ ChEBI
+
+
+
+
+ gases nobles
+ ChEBI
+
+
+
+
+ gaz noble
+ ChEBI
+
+
+
+
+ gaz nobles
+ ChEBI
+
+
+
+
+ group 18 elements
+ IUPAC
+
+
+
+
+ group VIII elements
+ ChEBI
+
+
+
+
+ inert gases
+ ChEBI
+
+
+
+
+ noble gas
+ ChEBI
+
+
+
+
+ rare gases
+ ChEBI
+
-
+
-
-
- A food product type is a class of food products that is differentiated by its food composition, processing and/or consumption characteristics. This does not include brand name products but it may include generic food dish categories.
- food product type
+
+
+ group 13 elements
+ chebi_ontology
+ Element der Borgruppe
+ boron group element
+ boron group elements
+ group III elements
+ CHEBI:33317
+
+ boron group element atom
+
+
+
+ group 13 elements
+ IUPAC
+
+
+
+
+
+ Element der Borgruppe
+ ChEBI
+
+
+
+
+ boron group element
+ ChEBI
+
+
+
+
+ boron group elements
+ ChEBI
+
+
+
+
+ group III elements
+ ChEBI
+
-
+
-
-
- chemical food product
+
+
+ An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
+ main group elements
+ chebi_ontology
+ Hauptgruppenelement
+ Hauptgruppenelemente
+ main group element
+ CHEBI:33318
+
+ main group element atom
+
+
+
+ main group elements
+ IUPAC
+
+
+
+
+
+ Hauptgruppenelement
+ ChEBI
+
+
+
+
+ Hauptgruppenelemente
+ ChEBI
+
+
+
+
+ main group element
+ ChEBI
+
-
+
-
-
- food additive
+
+
+ lanthanoids
+ chebi_ontology
+ Lanthanoid
+ Lanthanoide
+ Lanthanoidengruppe
+ Lanthanoidenreiche
+ Ln
+ lanthanide
+ lanthanides
+ lanthanoid
+ CHEBI:33319
+
+ lanthanoid atom
+
+
+
+ lanthanoids
+ IUPAC
+
+
+
+
+
+ Lanthanoid
+ ChEBI
+
+
+
+
+ Lanthanoide
+ ChEBI
+
+
+
+
+ Lanthanoidengruppe
+ ChEBI
+
+
+
+
+ Lanthanoidenreiche
+ ChEBI
+
+
+
+
+ Ln
+ ChEBI
+
+
+
+
+ lanthanide
+ ChEBI
+
+
+
+
+ lanthanides
+ ChEBI
+
+
+
+
+ lanthanoid
+ ChEBI
+
-
+
-
-
-
- A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
- molecular process
- GO:0005554
- molecular function
- molecular_function
- GO:0003674
-
-
-
-
-
-
-
-
- Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
-
- molecular_function
+
+
+ actinoids
+ chebi_ontology
+ Actinoid
+ Actinoide
+ Actinoidenelemente
+ Actinoidengruppe
+ Aktinoide
+ Aktinoidenelemente
+ An
+ actinide
+ actinides
+ actinoid
+ CHEBI:33320
+
+ actinoid atom
-
-
- A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
- GOC:pdt
+
+
+ actinoids
+ IUPAC
+
+
+
+
+
+ Actinoid
+ ChEBI
+
+
+
+
+ Actinoide
+ ChEBI
+
+
+
+
+ Actinoidenelemente
+ ChEBI
+
+
+
+
+ Actinoidengruppe
+ ChEBI
+
+
+
+
+ Aktinoide
+ ChEBI
+
+
+
+
+ Aktinoidenelemente
+ ChEBI
+
+
+
+
+ An
+ ChEBI
+
+
+
+
+ actinide
+ ChEBI
+
+
+
+
+ actinides
+ ChEBI
+
+
+
+
+ actinoid
+ ChEBI
-
+
-
-
- Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
- Wikipedia:Enzyme
- enzyme activity
- molecular_function
- GO:0003824
-
-
-
-
-
-
-
- catalytic activity
+
+
+ rare earth metals
+ chebi_ontology
+ rare earth metal
+ CHEBI:33321
+
+ rare earth metal atom
-
-
- Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
- GOC:vw
- ISBN:0198506732
+
+
+ rare earth metals
+ IUPAC
+
-
-
- enzyme activity
- GOC:dph
- GOC:tb
+
+
+ rare earth metal
+ ChEBI
-
+
-
- receptor activity
+
+
+ 0
+ Rb
+ InChI=1S/Rb
+ IGLNJRXAVVLDKE-UHFFFAOYSA-N
+ 85.46780
+ 84.91179
+ [Rb]
+ CAS:7440-17-7
+ DrugBank:DB06749
+ Gmelin:16244
+ WebElements:Rb
+ rubidium
+ chebi_ontology
+ 37Rb
+ Rb
+ rubidio
+ rubidium
+ CHEBI:33322
+
+ rubidium atom
-
+
+
+
+ CAS:7440-17-7
+ ChemIDplus
+
+
+
+
+ CAS:7440-17-7
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16244
+ Gmelin
+
+
+
+
+ rubidium
+ IUPAC
+
+
+
+
+
+ 37Rb
+ IUPAC
+
+
+
+
+ Rb
+ IUPAC
+
+
+
+
+ rubidio
+ ChEBI
+
+
+
+
+ rubidium
+ ChEBI
+
+
-
+
-
-
- Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
- receptor binding
- receptor ligand
- receptor-associated protein activity
- signaling receptor binding
+
+
+ 0
+ Sr
+ InChI=1S/Sr
+ CIOAGBVUUVVLOB-UHFFFAOYSA-N
+ 87.62000
+ 87.90561
+ [Sr]
+ CAS:7440-24-6
+ WebElements:Sr
+ strontium
+ chebi_ontology
+ 38Sr
+ Sr
+ estroncio
+ strontium
+ CHEBI:33324
+
+ strontium atom
-
-
- Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
- GOC:bf
- GOC:ceb
- ISBN:0198506732
+
+
+ CAS:7440-24-6
+ ChemIDplus
+
+
+
+
+ CAS:7440-24-6
+ NIST Chemistry WebBook
+
+
+
+
+ strontium
+ IUPAC
+
+
+
+
+
+ 38Sr
+ IUPAC
+
+
+
+
+ Sr
+ IUPAC
+
+
+
+
+ estroncio
+ ChEBI
+
+
+
+
+ strontium
+ ChEBI
-
+
-
-
- The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
- ligand
- binding
+
+
+
+
+ 0
+ Sc
+ InChI=1S/Sc
+ SIXSYDAISGFNSX-UHFFFAOYSA-N
+ 44.95591
+ 44.95591
+ [Sc]
+ CAS:7440-20-2
+ WebElements:Sc
+ scandium
+ chebi_ontology
+ 21Sc
+ Sc
+ Skandium
+ escandio
+ scandium
+ CHEBI:33330
+
+ scandium atom
-
-
- The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
- GOC:ceb
- GOC:mah
- ISBN:0198506732
+
+
+ CAS:7440-20-2
+ ChemIDplus
+
+
+
+
+ CAS:7440-20-2
+ NIST Chemistry WebBook
+
+
+
+
+ scandium
+ IUPAC
+
+
+
+
+
+ 21Sc
+ IUPAC
+
+
+
+
+ Sc
+ IUPAC
+
+
+
+
+ Skandium
+ ChEBI
+
+
+
+
+ escandio
+ ChEBI
+
+
+
+
+ scandium
+ ChEBI
-
+
-
-
- Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
- protein amino acid binding
- glycoprotein binding
- protein binding
+
+
+
+
+ 0
+ Y
+ InChI=1S/Y
+ VWQVUPCCIRVNHF-UHFFFAOYSA-N
+ 88.90585
+ 88.90584
+ [Y]
+ CAS:7440-65-5
+ Gmelin:16319
+ WebElements:Y
+ yttrium
+ chebi_ontology
+ 39Y
+ Y
+ ytrio
+ yttrium
+ CHEBI:33331
+
+ yttrium atom
-
-
- Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
- GOC:go_curators
+
+
+ CAS:7440-65-5
+ ChemIDplus
+
+
+
+
+ CAS:7440-65-5
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16319
+ Gmelin
+
+
+
+
+ yttrium
+ IUPAC
+
+
+
+
+
+ 39Y
+ IUPAC
+
+
+
+
+ Y
+ ChEBI
+
+
+
+
+ ytrio
+ ChEBI
+
+
+
+
+ yttrium
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage.
- organic acid metabolism
- biological_process
- GO:0006082
-
- organic acid metabolic process
+
+
+ group 3 elements
+ chebi_ontology
+ scandium group element
+ scandium group elements
+ CHEBI:33335
+
+ scandium group element atom
-
-
- The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage.
- ISBN:0198506732
+
+
+ group 3 elements
+ IUPAC
+
+
+
+
+
+ scandium group element
+ ChEBI
+
+
+
+
+ scandium group elements
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).
- phosphorus metabolism
- biological_process
- GO:0006793
-
- phosphorus metabolic process
+
+
+
+
+ 0
+ La
+ InChI=1S/La
+ FZLIPJUXYLNCLC-UHFFFAOYSA-N
+ 138.90550
+ 138.90636
+ [La]
+ CAS:7439-91-0
+ Gmelin:16203
+ WebElements:La
+ lanthanum
+ chebi_ontology
+ 57La
+ La
+ Lanthan
+ lantano
+ lanthane
+ lanthanum
+ CHEBI:33336
+
+ lanthanum atom
-
-
- The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).
- GOC:ai
+
+
+ CAS:7439-91-0
+ ChemIDplus
+
+
+
+
+ CAS:7439-91-0
+ NIST Chemistry WebBook
+
+
+
+
+ Gmelin:16203
+ Gmelin
+
+
+
+
+ lanthanum
+ IUPAC
+
+
+
+
+
+ 57La
+ IUPAC
+
+
+
+
+ La
+ ChEBI
+
+
+
+
+ Lanthan
+ ChEBI
+
+
+
+
+ lantano
+ ChEBI
+
+
+
+
+ lanthane
+ ChEBI
+
+
+
+
+ lanthanum
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
- phosphate metabolism
- biological_process
- phosphate metabolic process
- GO:0006796
- phosphate-containing compound metabolic process
+
+
+ group 12 elements
+ chebi_ontology
+ zinc group element
+ zinc group elements
+ CHEBI:33340
+
+ zinc group element atom
-
-
- The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
- GOC:ai
+
+
+ group 12 elements
+ IUPAC
+
+
+
+
+
+ zinc group element
+ ChEBI
+
+
+
+
+ zinc group elements
+ ChEBI
-
+
-
-
- Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
- cell communication
+
+
+ 0
+ Ti
+ InChI=1S/Ti
+ RTAQQCXQSZGOHL-UHFFFAOYSA-N
+ 47.86700
+ 47.94794
+ [Ti]
+ CAS:7440-32-6
+ WebElements:Ti
+ titanium
+ chebi_ontology
+ 22Ti
+ Ti
+ Titan
+ titane
+ titanio
+ titanium
+ CHEBI:33341
+
+ titanium atom
-
-
- Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
- GOC:mah
+
+
+ CAS:7440-32-6
+ ChemIDplus
+
+
+
+
+ CAS:7440-32-6
+ NIST Chemistry WebBook
+
+
+
+
+ titanium
+ IUPAC
+
+
+
+
+
+ 22Ti
+ IUPAC
+
+
+
+
+ Ti
+ IUPAC
+
+
+
+
+ Titan
+ ChEBI
+
+
+
+
+ titane
+ ChEBI
+
+
+
+
+ titanio
+ ChEBI
+
+
+
+
+ titanium
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
- signaling cascade
- signalling cascade
- signaling pathway
- signalling pathway
- signal transduction
+
+
+ 0
+ Nb
+ InChI=1S/Nb
+ GUCVJGMIXFAOAE-UHFFFAOYSA-N
+ 92.90638
+ 92.90637
+ [Nb]
+ CAS:7440-03-1
+ WebElements:Nb
+ niobium
+ chebi_ontology
+ 41Nb
+ Nb
+ Niob
+ columbio
+ columbium
+ niobio
+ niobium
+ CHEBI:33344
+
+ niobium atom
-
-
- The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
- GOC:go_curators
- GOC:mtg_signaling_feb11
+
+
+ CAS:7440-03-1
+ ChemIDplus
+
+
+
+
+ CAS:7440-03-1
+ NIST Chemistry WebBook
+
+
+
+
+ niobium
+ IUPAC
+
+
+
+
+
+ 41Nb
+ IUPAC
+
+
+
+
+ Nb
+ IUPAC
+
+
+
+
+ Niob
+ ChEBI
+
+
+
+
+ columbio
+ ChEBI
+
+
+
+
+ columbium
+ NIST_Chemistry_WebBook
+
+
+
+
+ niobio
+ ChEBI
-
+
- signalling pathway
- GOC:mah
+ niobium
+ ChEBI
-
+
-
-
- A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
- Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
- jl
- 2012-09-19T15:05:24Z
- GO:0000004
- GO:0007582
- GO:0044699
- Wikipedia:Biological_process
- biological process
- physiological process
- biological_process
- single organism process
- single-organism process
- GO:0008150
-
-
-
-
-
-
-
-
-
- Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
- biological_process
+
+
+ group 4 elements
+ chebi_ontology
+ titanium group element
+ titanium group elements
+ CHEBI:33345
+
+ titanium group element atom
-
-
- A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
- GOC:pdt
+
+
+ group 4 elements
+ IUPAC
+
-
-
- Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
- GOC:go_curators
- GOC:isa_complete
+
+
+ titanium group element
+ ChEBI
+
+
+
+
+ titanium group elements
+ ChEBI
-
+
-
-
- The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
- jl
- 2012-10-17T15:46:40Z
- GO:0044236
- GO:0044710
- Wikipedia:Metabolism
- metabolism
- metabolic process resulting in cell growth
- metabolism resulting in cell growth
- multicellular organism metabolic process
- biological_process
- single-organism metabolic process
- GO:0008152
-
-
-
-
-
- Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
- metabolic process
+
+
+ group 5 elements
+ chebi_ontology
+ vanadium group element
+ vanadium group elements
+ CHEBI:33347
+
+ vanadium group element atom
-
-
- The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
- GOC:go_curators
- ISBN:0198547684
+
+
+ group 5 elements
+ IUPAC
+
+
+
+
+
+ vanadium group element
+ ChEBI
+
+
+
+
+ vanadium group elements
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of signal transduction.
- regulation of signaling pathway
- regulation of signalling pathway
- regulation of signal transduction
+
+
+ group 6 elements
+ chebi_ontology
+ chromium group element
+ chromium group elements
+ CHEBI:33350
+
+ chromium group element atom
-
-
- Any process that modulates the frequency, rate or extent of signal transduction.
- GOC:sm
+
+
+ group 6 elements
+ IUPAC
+
+
+
+
+
+ chromium group element
+ ChEBI
-
+
- regulation of signalling pathway
- GOC:mah
+ chromium group elements
+ ChEBI
-
+
-
-
- Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
- jl
- 2012-12-11T16:56:55Z
- GO:0008151
- GO:0044763
- GO:0050875
- cell physiology
- cellular physiological process
- cell growth and/or maintenance
- biological_process
- single-organism cellular process
- GO:0009987
-
-
- cellular process
+
+
+ group 7 elements
+ chebi_ontology
+ manganese group element
+ manganese group elements
+ CHEBI:33352
+
+ manganese group element atom
-
-
- Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
- GOC:go_curators
- GOC:isa_complete
+
+
+ group 7 elements
+ IUPAC
+
+
+
+
+
+ manganese group element
+ ChEBI
+
+
+
+
+ manganese group elements
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
- regulation of cell communication
+
+
+ group 8 elements
+ chebi_ontology
+ iron group element
+ iron group elements
+ CHEBI:33356
+
+ iron group element atom
-
-
- Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
- GOC:dph
- GOC:tb
+
+
+ group 8 elements
+ IUPAC
+
+
+
+
+
+ iron group element
+ ChEBI
+
+
+
+
+ iron group elements
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
- true
-
-
- Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
- Reactome:R-HSA-6788855
- Reactome:R-HSA-6788867
- phosphokinase activity
- molecular_function
- GO:0016301
-
-
-
-
-
-
- Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.
-
- kinase activity
+
+
+ group 9 elements
+ chebi_ontology
+ cobalt group element
+ cobalt group elements
+ CHEBI:33358
+
+ cobalt group element atom
-
-
- Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
- ISBN:0198506732
+
+
+ group 9 elements
+ IUPAC
+
-
-
- Reactome:R-HSA-6788855
- FN3KRP phosphorylates PsiAm, RibAm
+
+
+ cobalt group element
+ ChEBI
-
-
- Reactome:R-HSA-6788867
- FN3K phosphorylates ketosamines
+
+
+ cobalt group elements
+ ChEBI
-
+
-
-
- The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
- Wikipedia:Phosphorylation
- biological_process
- GO:0016310
-
-
- phosphorylation
+
+
+ group 10 elements
+ chebi_ontology
+ nickel group element
+ nickel group elements
+ CHEBI:33362
+
+ nickel group element atom
-
-
- The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
- ISBN:0198506732
+
+
+ group 10 elements
+ IUPAC
+
+
+
+
+
+ nickel group element
+ ChEBI
+
+
+
+
+ nickel group elements
+ ChEBI
-
+
-
-
- Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
- EC:2.-.-.-
- Reactome:R-HSA-1483089
- Reactome:R-HSA-1483186
- Reactome:R-HSA-5668414
- Reactome:R-HSA-8868783
- molecular_function
- GO:0016740
-
-
-
-
-
-
-
-
-
- transferase activity
+
+
+ group 11 elements
+ chebi_ontology
+ coinage metals
+ copper group element
+ copper group elements
+ CHEBI:33366
+
+ copper group element atom
-
-
- Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
- ISBN:0198506732
-
-
-
-
- Reactome:R-HSA-1483089
- PE is converted to PS by PTDSS2
+
+
+ group 11 elements
+ IUPAC
+
-
-
- Reactome:R-HSA-1483186
- PC is converted to PS by PTDSS1
+
+
+ coinage metals
+ ChEBI
-
-
- Reactome:R-HSA-5668414
- TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK
+
+
+ copper group element
+ ChEBI
-
-
- Reactome:R-HSA-8868783
- TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248
+
+
+ copper group elements
+ ChEBI
-
+
-
-
- Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
- EC:2.7.-.-
- molecular_function
- GO:0016772
-
- Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides.
-
- transferase activity, transferring phosphorus-containing groups
+
+
+
+ 0
+ Ce
+ InChI=1S/Ce
+ GWXLDORMOJMVQZ-UHFFFAOYSA-N
+ 140.11600
+ 139.90544
+ [Ce]
+ CAS:7440-45-1
+ Gmelin:16275
+ WebElements:Ce
+ cerium
+ chebi_ontology
+ 58Ce
+ Ce
+ Cer
+ Zer
+ cerio
+ CHEBI:33369
+
+ cerium
-
-
- Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
- GOC:jl
- ISBN:0198506732
+
+
+ CAS:7440-45-1
+ ChemIDplus
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
- regulation of phosphate metabolism
- regulation of phosphate metabolic process
-
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
- GOC:go_curators
+
+
+ CAS:7440-45-1
+ NIST Chemistry WebBook
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
- regulation of metabolism
- regulation of multicellular organismal metabolic process
- regulation of organismal metabolic process
- regulation of metabolic process
-
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
- GOC:go_curators
+
+
+ Gmelin:16275
+ Gmelin
-
-
- regulation of organismal metabolic process
- GOC:tb
+
+
+ cerium
+ ChEBI
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of a signaling process.
- regulation of signaling process
- regulation of signalling process
- regulation of signaling
-
-
-
- Any process that modulates the frequency, rate or extent of a signaling process.
- GOC:mtg_signal
+
+
+ cerium
+ IUPAC
+
-
+
- regulation of signaling process
- GOC:bf
+ 58Ce
+ IUPAC
-
+
- regulation of signalling process
- GOC:mah
+ Ce
+ IUPAC
-
-
-
-
-
-
-
- The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
- biological signaling
- signaling process
- signalling
- signalling process
- single organism signaling
- signaling
-
-
-
- The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
- GOC:mtg_signal
- GOC:mtg_signaling_feb11
- GOC:signaling
+
+
+ Cer
+ ChEBI
-
+
- signalling process
- GOC:mah
+ Zer
+ ChEBI
-
-
-
-
-
-
-
- The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
- receptor regulator activity
-
-
-
- The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
- GOC:ceb
+
+
+ cerio
+ ChEBI
-
+
-
-
- The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
- receptor activator activity
- signaling receptor activator activity
+
+
+ 0
+ Th
+ InChI=1S/Th
+ ZSLUVFAKFWKJRC-UHFFFAOYSA-N
+ 232.03810
+ 232.03806
+ [Th]
+ CAS:7440-29-1
+ KEGG:C19157
+ WebElements:Th
+ thorium
+ chebi_ontology
+ 90Th
+ Th
+ torio
+ CHEBI:33385
+
+ thorium
-
-
- The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
- GOC:ceb
+
+
+ CAS:7440-29-1
+ ChemIDplus
+
+
+
+
+ CAS:7440-29-1
+ KEGG COMPOUND
+
+
+
+
+ CAS:7440-29-1
+ NIST Chemistry WebBook
+
+
+
+
+ thorium
+ IUPAC
+
+
+
+
+
+ 90Th
+ IUPAC
+
+
+
+
+ Th
+ IUPAC
+
+
+
+
+ torio
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
- regulation of cellular metabolism
- regulation of cellular metabolic process
+
+
+
+ chebi_ontology
+ oxoacids of sulfur
+ sulfur oxoacids
+ CHEBI:33402
+
+ sulfur oxoacid
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
- GOC:mah
+
+
+ oxoacids of sulfur
+ ChEBI
+
+
+
+
+ sulfur oxoacids
+ ChEBI
-
+
-
-
+
+
+
+
+ chebi_ontology
+ elemental sulphur
+ CHEBI:33403
+
+ elemental sulfur
+
+
+
+ elemental sulphur
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
-
-
+
+
- Any process that modulates the frequency, rate or extent of protein binding.
- regulation of protein binding
+ A hydracid is a compound which contains hydrogen that is not bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
+ hydracid
+ chebi_ontology
+ hydracids
+ CHEBI:33405
+
+ hydracid
-
-
- Any process that modulates the frequency, rate or extent of protein binding.
- GOC:go_curators
+
+
+ hydracid
+ IUPAC
+
+
+
+
+
+ hydracids
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
-
-
+
+
- The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
- keto acid metabolic process
- keto acid metabolism
- ketoacid metabolic process
- ketoacid metabolism
- oxo acid metabolic process
- oxo acid metabolism
- oxoacid metabolism
- biological_process
- GO:0043436
- oxoacid metabolic process
+ chebi_ontology
+ pnictogen oxoacids
+ CHEBI:33408
+
+ pnictogen oxoacid
-
-
- The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
- Wikipedia:Oxyacid
+
+
+ pnictogen oxoacids
+ ChEBI
-
+
-
-
-
- The chemical reactions and pathways by which individual cells transform chemical substances.
- cellular metabolism
- biological_process
- intermediary metabolism
- GO:0044237
-
- cellular metabolic process
+
+
+
+ -1
+ 0.00000
+ [*-]
+ chebi_ontology
+ monoatomic monoanions
+ CHEBI:33429
+
+ monoatomic monoanion
-
-
- The chemical reactions and pathways by which individual cells transform chemical substances.
- GOC:go_curators
-
-
-
+
- intermediary metabolism
- GOC:mah
+ monoatomic monoanions
+ ChEBI
-
+
-
-
- The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule.
- jl
- 2010-01-26T12:05:20Z
- small molecule metabolism
- biological_process
- GO:0044281
-
-
-
-
- Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides.
- small molecule metabolic process
+
+
+
+ chebi_ontology
+ CHEBI:33431
+
+ elemental chlorine
-
-
-
- The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule.
- GOC:curators
- GOC:pde
- GOC:vw
-
-
+
-
-
-
-
-
-
-
-
-
- The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
- receptor agonist activity
- signaling molecule
- signaling receptor ligand activity
- vitamin D receptor activator activity
- receptor ligand activity
+
+
+
+ 0
+ Cl
+ 35.453
+ 34.96885
+ chebi_ontology
+ atomic chlorine
+ CHEBI:33432
+
+ monoatomic chlorine
-
-
- The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
- GOC:kv
- GOC:molecular_function_refactoring
- GOC:pdt
-
-
-
-
- receptor agonist activity
- GOC:molecular_function_refactoring
+
+
+ atomic chlorine
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
- regulation of response to stimulus
+
+
+ chebi_ontology
+ monoatomic halogens
+ CHEBI:33433
+
+ monoatomic halogen
-
-
- Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
- GOC:jid
+
+
+ monoatomic halogens
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
- regulation of physiological process
- regulation of biological process
+
+
+ elemental halogen
+ chebi_ontology
+ elemental halogens
+ CHEBI:33434
+
+ elemental halogen
-
-
- Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
- GOC:ai
- GOC:go_curators
+
+
+ elemental halogen
+ ChEBI
+
+
+
+
+ elemental halogens
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the activity of an enzyme.
- regulation of enzyme activity
- regulation of metalloenzyme activity
- regulation of catalytic activity
+
+
+
+ chebi_ontology
+ nitrogen oxoacids
+ oxoacids of nitrogen
+ CHEBI:33455
+
+ nitrogen oxoacid
-
-
- Any process that modulates the activity of an enzyme.
- GOC:ai
- GOC:ebc
- GOC:vw
+
+
+ nitrogen oxoacids
+ ChEBI
+
+
+
+
+ oxoacids of nitrogen
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
- regulation of cellular physiological process
- regulation of cellular process
+
+
+
+ A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons.
+ phosphorus oxoacid
+ chebi_ontology
+ Oxosaeure des Phosphors
+ oxoacids of phosphorus
+ phosphorus oxoacids
+ CHEBI:33457
+
+ phosphorus oxoacid
-
-
- Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
- GOC:go_curators
+
+
+ phosphorus oxoacid
+ ChEBI
+
+
+
+
+ Oxosaeure des Phosphors
+ ChEBI
+
+
+
+
+ oxoacids of phosphorus
+ ChEBI
+
+
+
+
+ phosphorus oxoacids
+ ChEBI
-
+
-
-
- Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
- physiological response to stimulus
- response to stimulus
+
+
+
+ nitrogen oxoanion
+ chebi_ontology
+ nitrogen oxoanions
+ oxoanions of nitrogen
+ CHEBI:33458
+
+ nitrogen oxoanion
-
-
- Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
- GOC:ai
- GOC:bf
+
+
+ nitrogen oxoanion
+ ChEBI
+
+
+
+
+ nitrogen oxoanions
+ ChEBI
+
+
+
+
+ oxoanions of nitrogen
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
- regulation of binding
+
+
+
+ pnictogen oxoanion
+ chebi_ontology
+ pnictogen oxoanions
+ CHEBI:33459
+
+ pnictogen oxoanion
-
-
- Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
- GOC:ai
+
+
+ pnictogen oxoanion
+ ChEBI
+
+
+
+
+ pnictogen oxoanions
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
- regulation of phosphorus metabolism
- regulation of phosphorus metabolic process
+
+
+
+
+ phosphorus oxoanion
+ chebi_ontology
+ oxoanions of phosphorus
+ phosphorus oxoanions
+ CHEBI:33461
+
+ phosphorus oxoanion
-
-
- Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
- GOC:ai
+
+
+ phosphorus oxoanion
+ ChEBI
+
+
+
+
+ oxoanions of phosphorus
+ ChEBI
+
+
+
+
+ phosphorus oxoanions
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
- transferase regulator
- regulation of transferase activity
+
+
+
+ chebi_ontology
+ CHEBI:33464
+
+ elemental phosphorus
+
+
+
+
+
+
+
+
+
+
+ elemental pnictogen
+ chebi_ontology
+ elemental pnictogens
+ CHEBI:33465
+
+ elemental pnictogen
-
-
- Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
- EC:2.-.-.-
- GOC:ai
+
+
+ elemental pnictogen
+ ChEBI
+
+
+
+
+ elemental pnictogens
+ ChEBI
-
+
-
-
-
- Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
- cellular response to stimulus
+
+
+
+ sulfur oxoanion
+ chebi_ontology
+ oxoanions of sulfur
+ sulfur oxoanions
+ CHEBI:33482
+
+ sulfur oxoanion
-
-
- Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
- GOC:bf
- GOC:jl
+
+
+ sulfur oxoanion
+ ChEBI
+
+
+
+
+ oxoanions of sulfur
+ ChEBI
+
+
+
+
+ sulfur oxoanions
+ ChEBI
-
+
-
-
+
+
+
+
+
+
+
+
+ chalcogen oxoacid
+ chebi_ontology
+ chalcogen oxoacids
+ CHEBI:33484
+
+ chalcogen oxoacid
+
+
+
+ chalcogen oxoacid
+ ChEBI
+
+
+
+
+ chalcogen oxoacids
+ ChEBI
+
-
+
-
-
- Any process that modulates a measurable attribute of any biological process, quality or function.
- regulation
- biological regulation
+
+
+ chalcogen oxoanion
+ chebi_ontology
+ chalcogen oxoanions
+ CHEBI:33485
+
+ chalcogen oxoanion
-
-
- Any process that modulates a measurable attribute of any biological process, quality or function.
- GOC:dph
- GOC:isa_complete
- GOC:mah
- GOC:pr
- GOC:vw
+
+
+ chalcogen oxoanion
+ ChEBI
+
+
+
+
+ chalcogen oxoanions
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
-
-
+
+
- Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
- regulation of a molecular function
- regulation of molecular function
+ A molecular entity containing one or more atoms of a transition element.
+ chebi_ontology
+ transition element molecular entities
+ transition metal molecular entity
+ CHEBI:33497
+
+ transition element molecular entity
-
-
- Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
- GOC:isa_complete
+
+
+ transition element molecular entities
+ ChEBI
+
+
+
+
+ transition metal molecular entity
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
-
-
+
+
- The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
- mah
- 2010-03-08T03:32:18Z
- organic molecular entity metabolic process
- organic molecular entity metabolism
- organic substance metabolism
- biological_process
- GO:0071704
- organic substance metabolic process
+ chebi_ontology
+ actinoid compounds
+ actinoid molecular entities
+ CHEBI:33498
+
+ actinoid molecular entity
-
-
- The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
- GOC:mah
+
+
+ actinoid compounds
+ ChEBI
+
+
+
+
+ actinoid molecular entities
+ ChEBI
-
+
-
-
+
+
-
-
+
+
- A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
- molecular function regulator
+ chebi_ontology
+ uranium molecular entities
+ CHEBI:33499
+
+ uranium molecular entity
-
-
- A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
- GOC:dos
- GOC:pt
+
+
+ uranium molecular entities
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
- regulation of receptor ligand
- regulation of receptor binding
+
+
+ chebi_ontology
+ transition element cations
+ transition metal cation
+ CHEBI:33515
+
+ transition element cation
-
-
- Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
- GOC:TermGenie
- GOC:signaling
+
+
+ transition element cations
+ ChEBI
-
-
- regulation of receptor ligand
- GOC:TermGenie
+
+
+ transition metal cation
+ ChEBI
-
+
-
-
- measurement unit label
- Examples of measurement unit labels are liters, inches, weight per volume.
-
- A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
- 2009-03-16: provenance: a term measurement unit was
-proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
-Cristian Cocos, and subsequently moved to IAO where the objective for
-which the original term was defined was satisfied with the definition
-of this, different, term.
- 2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
- PERSON: Alan Ruttenberg
- PERSON: Melanie Courtot
-
- measurement unit label
+
+
+ An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
+ CHEBI:25217
+ CHEBI:6788
+ KEGG:C00050
+ PMID:21784043
+ Wikipedia:Metal
+ chebi_ontology
+ elemental metal
+ elemental metals
+ metal element
+ metal elements
+ metals
+ CHEBI:33521
+
+ metal atom
+
+
+
+ PMID:21784043
+ Europe PMC
+
+
+
+
+ elemental metal
+ ChEBI
+
+
+
+
+ elemental metals
+ ChEBI
+
+
+
+
+ metal element
+ ChEBI
+
+
+
+
+ metal elements
+ ChEBI
+
+
+
+
+ metals
+ ChEBI
+
-
+
-
-
- objective specification
- In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.
-
- a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
- 2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."
- 2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.
- Answers the question, why did you do this experiment?
- PERSON: Alan Ruttenberg
- PERSON: Barry Smith
- PERSON: Bjoern Peters
- PERSON: Jennifer Fostel
- goal specification
- OBI Plan and Planned Process/Roles Branch
- OBI_0000217
-
- objective specification
+
+
+ chebi_ontology
+ s-block element
+ s-block elements
+ CHEBI:33559
+
+ s-block element atom
+
+
+
+ s-block element
+ ChEBI
+
+
+
+
+ s-block elements
+ ChEBI
+
-
+
-
-
- Pour the contents of flask 1 into flask 2
-
- a directive information entity that describes an action the bearer will take
- Alan Ruttenberg
- OBI Plan and Planned Process branch
-
- action specification
+
+
+ Any main group element atom belonging to the p-block of the periodic table.
+ chebi_ontology
+ p-block element
+ p-block elements
+ CHEBI:33560
+
+ p-block element atom
+
+
+
+ p-block element
+ ChEBI
+
+
+
+
+ p-block elements
+ ChEBI
+
-
+
-
-
- datum label
-
- A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
- http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n
- GROUP: IAO
- 9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.
-
-
- datum label
+
+
+ chebi_ontology
+ d-block element
+ d-block elements
+ CHEBI:33561
+
+ d-block element atom
+
+
+
+ d-block element
+ ChEBI
+
+
+
+
+ d-block elements
+ ChEBI
+
-
-
-
-
- data item
- Data items include counts of things, analyte concentrations, and statistical summaries.
-
- An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
- a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
- 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
- 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
- 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
- 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
- JAR: datum -- well, this will be very tricky to define, but maybe some
-information-like stuff that might be put into a computer and that is
-meant, by someone, to denote and/or to be interpreted by some
-process... I would include lists, tables, sentences... I think I might
-defer to Barry, or to Brian Cantwell Smith
+
-JAR: A data item is an approximately justified approximately true approximate belief
- PERSON: Alan Ruttenberg
- PERSON: Chris Stoeckert
- PERSON: Jonathan Rees
- data
-
- data item
+
+
+ chebi_ontology
+ f-block element
+ f-block elements
+ CHEBI:33562
+
+ f-block element atom
+
+
+
+ f-block element
+ ChEBI
+
+
+
+
+ f-block elements
+ ChEBI
+
-
+
-
-
+
+
-
-
+
+
- information content entity
- Examples of information content entites include journal articles, data, graphical layouts, and graphs.
-
- A generically dependent continuant that is about some thing.
- 2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
- information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).
-
-Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
- PERSON: Chris Stoeckert
- OBI_0000142
-
- information content entity
+ A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
+ chebi_ontology
+ main group compounds
+ main group molecular entities
+ CHEBI:33579
+
+ main group molecular entity
+
+
+
+ main group compounds
+ ChEBI
+
+
+
+
+ main group molecular entities
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
- 1
-
-
+
+
-
- 1
+
+
- 10 feet. 3 ml.
-
- a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.
- 2009-03-16: we decided to keep datum singular in scalar measurement datum, as in
-this case we explicitly refer to the singular form
- Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them.
- PERSON: Alan Ruttenberg
- PERSON: Melanie Courtot
-
- scalar measurement datum
+ chebi_ontology
+ boron group molecular entities
+ CHEBI:33581
+
+ boron group molecular entity
+
+
+
+ boron group molecular entities
+ ChEBI
+
-
+
-
-
+
+
-
-
+
+
-
- An information content entity whose concretizations indicate to their bearer how to realize them in a process.
- 2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
- 2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.
- 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
- Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan
- PERSON: Alan Ruttenberg
- PERSON: Bjoern Peters
-
- directive information entity
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- curation status specification
-
- The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
- Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
- PERSON:Bill Bug
- GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
- OBI_0000266
-
- curation status specification
-
-
-
-
-
-
-
-
- data set
- Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).
-
- A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
- 2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type
- 2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.
- person:Allyson Lister
- person:Chris Stoeckert
- OBI_0000042
- group:OBI
-
- data set
-
-
-
-
-
-
-
-
- data about an ontology part
- Data about an ontology part is a data item about a part of an ontology, for example a term
- data about an ontology part is a data item about a part of an ontology, for example a term
- Person:Alan Ruttenberg
- Person:Alan Ruttenberg
-
- data about an ontology part
+ carbon group molecular entity
+ chebi_ontology
+ carbon group molecular entities
+ CHEBI:33582
+
+ carbon group molecular entity
+
+
+
+ carbon group molecular entity
+ ChEBI
+
+
+
+
+ carbon group molecular entities
+ ChEBI
+
-
+
-
-
+
+
-
+
+ A main group molecular entity containing one or more atoms of any noble gas.
+ noble gas molecular entity
+ chebi_ontology
+ noble gas compounds
+ noble gas molecular entities
+ CHEBI:33583
+
+ noble gas molecular entity
+
+
+
+
+ noble gas molecular entity
+ ChEBI
+
+
+
+
+ noble gas compounds
+ ChEBI
+
+
+
+
+ noble gas molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
-
+
- plan specification
- PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
-
- A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
- 2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
- 2014-03-31: A plan specification can have other parts, such as conditional specifications.
- Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
- Alan Ruttenberg
- OBI Plan and Planned Process branch
- OBI_0000344
-
- 2/3/2009 Comment from OBI review.
-
-Action specification not well enough specified.
-Conditional specification not well enough specified.
-Question whether all plan specifications have objective specifications.
-
-Request that IAO either clarify these or change definitions not to use them
- plan specification
+ lead molecular entity
+ chebi_ontology
+ lead compounds
+ lead molecular entities
+ CHEBI:33585
+
+ lead molecular entity
+
+
+
+ lead molecular entity
+ ChEBI
+
+
+
+
+ lead compounds
+ ChEBI
+
+
+
+
+ lead molecular entities
+ ChEBI
+
-
+
-
-
+
+
-
-
+
+
- measurement datum
- Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
-
- A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
- 2/2/2009 is_specified_output of some assay?
- person:Chris Stoeckert
- OBI_0000305
- group:OBI
-
- measurement datum
+ chebi_ontology
+ hydrogen compounds
+ hydrogen molecular entities
+ CHEBI:33608
+
+ hydrogen molecular entity
+
+
+
+ hydrogen compounds
+ ChEBI
+
+
+
+
+ hydrogen molecular entities
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
- obsolescence reason specification
-
- The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
- The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
- PERSON: Alan Ruttenberg
- PERSON: Melanie Courtot
- obsolescence reason specification
+
+
+
+
+ CAS:7440-42-8
+ chebi_ontology
+ boron
+ trona elemental boron
+ CHEBI:33609
+
+ elemental boron
+
+
+
+ CAS:7440-42-8
+ NIST Chemistry WebBook
+
+
+
+
+ boron
+ NIST_Chemistry_WebBook
+
+
+
+
+ trona elemental boron
+ NIST_Chemistry_WebBook
+
-
+
-
-
- document
- A journal article, patent application, laboratory notebook, or a book
-
- A collection of information content entities intended to be understood together as a whole
- PERSON: Lawrence Hunter
-
- document
+
+
+
+
+
+
+
+
+ aluminium molecular entity
+ chebi_ontology
+ aluminium compounds
+ aluminium molecular entities
+ aluminum compounds
+ CHEBI:33620
+
+ aluminium molecular entity
+
+
+
+ aluminium molecular entity
+ ChEBI
+
+
+
+
+ aluminium compounds
+ ChEBI
+
+
+
+
+ aluminium molecular entities
+ ChEBI
+
+
+
+
+ aluminum compounds
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
- denotator type
- The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
- A denotator type indicates how a term should be interpreted from an ontological perspective.
- Alan Ruttenberg
- Barry Smith, Werner Ceusters
- denotator type
+
+
+
+
+ chebi_ontology
+ elemental aluminum
+ CHEBI:33628
+
+ elemental aluminium
+
+
+
+ elemental aluminum
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
+
+
-
-
+
+
- Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database.
-
- a planned process in which a document is created or added to by including the specified input in it.
- 6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape
- Bjoern Peters
- wikipedia http://en.wikipedia.org/wiki/Documenting
-
- documenting
+ chebi_ontology
+ zinc group molecular entities
+ CHEBI:33673
+
+ zinc group molecular entity
+
+
+
+ zinc group molecular entities
+ ChEBI
+
-
+
-
-
- all
- root
+
+
+
+
+
+
+
+
+ An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
+ s-block molecular entity
+ chebi_ontology
+ s-block compounds
+ s-block molecular entities
+ CHEBI:33674
+
+ s-block molecular entity
-
+
+
+ s-block molecular entity
+ ChEBI
+
+
+
- all
-
+ s-block compounds
+ ChEBI
-
+
- all
-
+ s-block molecular entities
+ ChEBI
-
+
-
-
-
- Vira
- Viridae
- viruses
- Viruses
+
+
+
+
+
+
+
+
+ A main group molecular entity that contains one or more atoms of a p-block element.
+ chebi_ontology
+ p-block compounds
+ p-block molecular entities
+ p-block molecular entitiy
+ CHEBI:33675
+
+ p-block molecular entity
-
+
- Vira
-
+ p-block compounds
+ ChEBI
-
+
- Viridae
-
+ p-block molecular entities
+ ChEBI
-
+
- viruses
-
+ p-block molecular entitiy
+ ChEBI
-
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Teleostomi
-
-
-
-
-
+
-
-
- NCBITaxon:40673
- GC_ID:1
- bony vertebrates
- ncbi_taxonomy
-
- Euteleostomi
+
+
+
+
+
+
+
+
+ A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element.
+ d-block molecular entity
+ chebi_ontology
+ d-block compounds
+ d-block molecular entities
+ CHEBI:33676
+
+ d-block molecular entity
-
+
- bony vertebrates
-
+ d-block molecular entity
+ ChEBI
+
+
+
+
+ d-block compounds
+ ChEBI
+
+
+
+
+ d-block molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
- biota
-
- cellular organisms
+
+
+
+
+
+
+
+
+ A molecular entity containing one or more atoms of an f-block element.
+ chebi_ontology
+ f-block compounds
+ f-block molecular entities
+ CHEBI:33677
+
+ f-block molecular entity
-
+
- biota
-
+ f-block compounds
+ ChEBI
-
+
- biota
-
+ f-block molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Dipnotetrapodomorpha
-
-
-
-
-
-
-
-
- GC_ID:1
- PMID:11743200
- PMID:11791233
- ncbi_taxonomy
- Boreotheria
-
- Boreoeutheria
+
+
+
+ helium molecular entity
-
-
-
- Boreotheria
-
-
-
+
-
-
-
- Bacteria
+
+
+
+ Hydrides are chemical compounds of hydrogen with other chemical elements.
+ chebi_ontology
+ CHEBI:33692
+
+ hydrides
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
- Homo/Pan/Gorilla group
-
- Homininae
+
+
+ oxygen hydride
-
-
-
- Homo/Pan/Gorilla group
-
-
-
+
-
-
-
- Archaea
+
+
+
+ biomacromolecule
-
+
-
-
-
-
- GC_ID:1
- PMID:23020233
- PMID:30257078
- eucaryotes
- eukaryotes
- ncbi_taxonomy
- Eucarya
- Eucaryotae
- Eukarya
- Eukaryotae
- eukaryotes
-
- Eukaryota
+
+
+
+
+
+
+
+
+ chromium group molecular entity
+ chebi_ontology
+ chromium group molecular entities
+ CHEBI:33741
+
+ chromium group molecular entity
-
-
- eucaryotes
-
-
-
-
-
- eucaryotes
-
-
-
-
-
- eukaryotes
-
-
-
-
+
- eukaryotes
-
-
-
-
-
- Eucarya
-
-
-
-
-
- Eucarya
-
+ chromium group molecular entity
+ ChEBI
-
+
- Eucaryotae
-
+ chromium group molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ tungsten molecular entity
+ chebi_ontology
+ tungsten compounds
+ tungsten molecular entities
+ CHEBI:33742
+
+ tungsten molecular entity
+
-
-
- Eucaryotae
-
+
+
+ tungsten molecular entity
+ ChEBI
-
+
- Eukarya
-
+ tungsten compounds
+ ChEBI
-
+
- Eukarya
-
+ tungsten molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ manganese group molecular entity
+ chebi_ontology
+ manganese group molecular entities
+ CHEBI:33743
+
+ manganese group molecular entity
+
-
-
- Eukaryotae
-
+
+
+ manganese group molecular entity
+ ChEBI
-
+
- Eukaryotae
-
+ manganese group molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ iron group molecular entity
+ chebi_ontology
+ iron group molecular entities
+ CHEBI:33744
+
+ iron group molecular entity
+
-
-
- eukaryotes
-
+
+
+ iron group molecular entity
+ ChEBI
-
+
- eukaryotes
-
+ iron group molecular entities
+ ChEBI
-
+
-
-
-
- GC_ID:1
- PMID:11214319
- PMID:12082125
- PMID:12878460
- PMID:15522813
- ncbi_taxonomy
-
- Euarchontoglires
+
+
+
+
+
+
+
+
+ copper group molecular entity
+ chebi_ontology
+ copper group molecular entities
+ CHEBI:33745
+
+ copper group molecular entity
+
+
+
+ copper group molecular entity
+ ChEBI
+
+
+
+
+ copper group molecular entities
+ ChEBI
+
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
- Anthropoidea
-
- Simiiformes
+
+
+
+
+
+
+
+
+ vanadium group molecular entity
+ chebi_ontology
+ vanadium group molecular entities
+ CHEBI:33746
+
+ vanadium group molecular entity
-
+
+
+ vanadium group molecular entity
+ ChEBI
+
+
+
- Anthropoidea
-
+ vanadium group molecular entities
+ ChEBI
-
+
-
-
-
- GC_ID:1
- ape
- apes
- ncbi_taxonomy
-
- Hominoidea
+
+
+
+
+
+
+
+
+ nickel group molecular entity
+ chebi_ontology
+ nickel group molecular entities
+ CHEBI:33747
+
+ nickel group molecular entity
-
+
- ape
-
+ nickel group molecular entity
+ ChEBI
-
-
- apes
-
+
+
+ nickel group molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- tetrapods
- ncbi_taxonomy
-
- Tetrapoda
+
+
+
+
+
+
+
+
+ nickel molecular entity
+ chebi_ontology
+ nickel compounds
+ nickel molecular entities
+ CHEBI:33748
+
+ nickel molecular entity
-
+
- tetrapods
-
+ nickel molecular entity
+ ChEBI
+
+
+
+
+ nickel compounds
+ ChEBI
+
+
+
+
+ nickel molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- amniotes
- ncbi_taxonomy
-
- Amniota
+
+
+
+
+
+
+
+
+ cobalt group molecular entity
+ chebi_ontology
+ cobalt group molecular entities
+ CHEBI:33767
+
+ cobalt group molecular entity
-
+
- amniotes
-
+ cobalt group molecular entity
+ ChEBI
+
+
+
+
+ cobalt group molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- Theria
- ncbi_taxonomy
-
- Theria <mammals>
+
+
+
+
+
+
+
+
+ titanium group molecular entity
+ chebi_ontology
+ titanium group molecular entities
+ CHEBI:33768
+
+ titanium group molecular entity
-
+
- Theria
-
+ titanium group molecular entity
+ ChEBI
+
+
+
+
+ titanium group molecular entities
+ ChEBI
-
+
-
-
- green plants
- Chlorobionta
- Chlorophyta/Embryophyta group
- chlorophyte/embryophyte group
- green plants
- Viridiplantae
+
+
+
+
+
+
+
+
+ scandium group molecular entity
+ chebi_ontology
+ scandium group compounds
+ scandium group molecular entities
+ CHEBI:33773
+
+ scandium group molecular entity
-
+
- green plants
-
+ scandium group molecular entity
+ ChEBI
-
+
- Chlorobionta
-
+ scandium group compounds
+ ChEBI
-
+
- Chlorophyta/Embryophyta group
-
+ scandium group molecular entities
+ ChEBI
+
+
+
+
+
+
+
+
+
+
+
+
+
+ chebi_ontology
+ lanthanoid compounds
+ lanthanoid molecular entities
+ CHEBI:33775
+
+ lanthanoid molecular entity
+
-
+
- chlorophyte/embryophyte group
-
+ lanthanoid compounds
+ ChEBI
-
+
- green plants
-
+ lanthanoid molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
- Fungi/Metazoa group
- opisthokonts
-
- Opisthokonta
+
+
+
+
+
+
+
+
+ chebi_ontology
+ beryllium compounds
+ beryllium molecular entities
+ CHEBI:33780
+
+ beryllium molecular entity
-
+
- Fungi/Metazoa group
-
+ beryllium compounds
+ ChEBI
-
+
- opisthokonts
-
+ beryllium molecular entities
+ ChEBI
-
+
-
-
-
- GC_ID:1
- metazoans
- multicellular animals
- ncbi_taxonomy
- Animalia
- animals
-
- Metazoa
+
+
+ chebi_ontology
+ CHEBI:33784
+
+ elemental beryllium
+
+
+
+
+
+
+
+
+ macromolecule
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ cobalt molecular entity
+ chebi_ontology
+ cobalt compounds
+ cobalt molecular entities
+ CHEBI:33888
+
+ cobalt molecular entity
-
-
- metazoans
-
-
-
-
+
- multicellular animals
-
+ cobalt molecular entity
+ ChEBI
-
+
- Animalia
-
+ cobalt compounds
+ ChEBI
-
+
- animals
-
+ cobalt molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Bilateria
+
+
+ A substance used in a chemical reaction to detect, measure, examine, or produce other substances.
+ reagent
+ chebi_ontology
+ reactif
+ reactivo
+ reagents
+ CHEBI:33893
+
+ reagent
+
+
+
+ reagent
+ IUPAC
+
+
+
+
+
+ reactif
+ IUPAC
+
+
+
+
+ reactivo
+ IUPAC
+
+
+
+
+ reagents
+ ChEBI
+
-
+
-
-
- GC_ID:1
- deuterostomes
- ncbi_taxonomy
-
- Deuterostomia
+
+
+ Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.
+ chebi_ontology
+ macronutrients
+ CHEBI:33937
+
+ macronutrient
-
-
- deuterostomes
-
+
+
+ macronutrients
+ ChEBI
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Haplorrhini
+
+
+
+ halide salt
-
+
-
-
-
- GC_ID:1
- mammals
- ncbi_taxonomy
- mammals
-
- Mammalia
+
+
+
+
+
+
+
+
+ silver molecular entity
+ chebi_ontology
+ silver compounds
+ silver molecular entities
+ CHEBI:33964
+
+ silver molecular entity
-
+
- mammals
-
+ silver molecular entity
+ ChEBI
+
+
+
+
+ silver compounds
+ ChEBI
-
+
- mammals
-
+ silver molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Eumetazoa
+
+
+ chebi_ontology
+ CHEBI:33966
+
+ elemental silver
-
+
-
-
-
- GC_ID:1
- chordates
- ncbi_taxonomy
- chordates
-
- Chordata
+
+
+
+
+
+
+
+
+ gold molecular entity
+ chebi_ontology
+ gold compounds
+ gold molecular entities
+ CHEBI:33969
+
+ gold molecular entity
-
+
- chordates
-
+ gold molecular entity
+ ChEBI
+
+
+
+
+ gold compounds
+ ChEBI
-
+
- chordates
-
+ gold molecular entities
+ ChEBI
-
+
-
-
- GC_ID:1
- Vertebrata
- vertebrates
- ncbi_taxonomy
- vertebrates
-
- Vertebrata <vertebrates>
+
+
+ chebi_ontology
+ CHEBI:33970
+
+ elemental gold
+
+
+
+
+
+
+
+
+ chebi_ontology
+ CHEBI:33973
+
+ elemental magnesium
+
+
+
+
+
+
+
+
+
+ chebi_ontology
+ nitrogen hydrides
+ CHEBI:35106
+
+ nitrogen hydride
-
-
- Vertebrata
-
-
-
-
-
- vertebrates
-
-
-
-
+
- vertebrates
-
+ nitrogen hydrides
+ ChEBI
-
+
-
-
- GC_ID:1
- Gnathostomata
- jawed vertebrates
- ncbi_taxonomy
-
- Gnathostomata <vertebrates>
+
+
+ Saturated acyclic nitrogen hydrides having the general formula NnHn+2.
+ chebi_ontology
+ azanes
+ CHEBI:35107
+
+ azane
-
-
- Gnathostomata
-
-
-
-
-
- jawed vertebrates
-
+
+
+ azanes
+ ChEBI
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Sarcopterygii
+
+
+ chebi_ontology
+ CHEBI:35113
+
+ elemental mercury
-
+
-
-
-
- GC_ID:1
- Craniata
- ncbi_taxonomy
-
- Craniata <chordates>
+
+
+ chebi_ontology
+ CHEBI:35115
+
+ elemental manganese
-
-
-
- Craniata
-
-
-
+
-
-
- GC_ID:1
- eutherian mammals
- placental mammals
- placentals
- ncbi_taxonomy
- Placentalia
- placentals
-
- Eutheria
+
+
+ chebi_ontology
+ CHEBI:35155
+
+ elemental calcium
+
+
+
+
+
+
+
+
+ chebi_ontology
+ CHEBI:35171
+
+ elemental vanadium
+
+
+
+
+
+
+
+
+ A substance that diminishes the rate of a chemical reaction.
+ inhibitor
+ chebi_ontology
+ inhibidor
+ inhibiteur
+ inhibitors
+ CHEBI:35222
+
+ inhibitor
-
+
- eutherian mammals
-
+ inhibitor
+ IUPAC
+
-
-
- placental mammals
-
+
+
+ inhibidor
+ ChEBI
+
+
+
+
+ inhibiteur
+ ChEBI
+
+
+
+
+ inhibitors
+ ChEBI
+
+
+
+
+
+
+
+ A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction.
+ catalyst
+ chebi_ontology
+ Katalysator
+ catalizador
+ catalyseur
+ CHEBI:35223
+
+ catalyst
+
-
+
- placentals
-
+ catalyst
+ IUPAC
+
+
+
+
+
+ Katalysator
+ ChEBI
-
+
- Placentalia
-
+ catalizador
+ ChEBI
-
+
- placentals
-
+ catalyseur
+ ChEBI
-
+
-
-
-
- GC_ID:1
- primate
- ncbi_taxonomy
- Primata
- primates
-
- Primates
+
+
+
+ An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
+ CHEBI:33274
+ CHEBI:33436
+ oxoanion
+ chebi_ontology
+ oxoacid anions
+ oxoanions
+ CHEBI:35406
+
+ oxoanion
-
+
- primate
-
+ oxoanion
+ ChEBI
-
+
- Primata
-
+ oxoacid anions
+ ChEBI
-
+
- primates
-
+ oxoanions
+ ChEBI
-
+
-
-
-
- GC_ID:1
- ncbi_taxonomy
-
- Catarrhini
+
+
+
+ alkali metal salt
-
+
-
-
-
- GC_ID:1
- great apes
- ncbi_taxonomy
- Pongidae
-
- Hominidae
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ A phosphorus oxoanion that is the conjugate base of phosphoric acid.
+ chebi_ontology
+ Pi
+ phosphate
+ phosphate ions
+ CHEBI:35780
+
+ phosphate ion
-
-
- great apes
-
+
+
+ Pi
+ ChEBI
+
+
+
+
+ phosphate
+ ChEBI
-
+
- Pongidae
-
+ phosphate ions
+ ChEBI
-
+
-
-
-
- GC_ID:1
- humans
- ncbi_taxonomy
-
- Homo
+
+
+
+ chebi_ontology
+ CHEBI:35826
+
+ elemental arsenic
-
-
-
- humans
-
-
-
+
-
-
-
- GC_ID:1
- human
- man
- ncbi_taxonomy
-
- Homo sapiens
+
+
+
+ pnictogen hydride
+ chebi_ontology
+ pnictogen hydrides
+ CHEBI:35881
+
+ pnictogen hydride
-
+
- human
-
+ pnictogen hydride
+ ChEBI
-
-
- man
-
+
+
+ pnictogen hydrides
+ ChEBI
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- planned process
- planned process
- Injecting mice with a vaccine in order to test its efficacy
-
- A processual entity that realizes a plan which is the concretization of a plan specification.
- 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
- We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some
-objectives is a planned process.
- Bjoern Peters
- branch derived
- 6/11/9: Edited at workshop. Used to include: is initiated by an agent
- This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)
-
- planned process
+
+
+
+ inorganic chloride
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- investigation
- Lung cancer investigation using expression profiling, a stem cell transplant investigation, biobanking is not an investigation, though it may be part of an investigation
-
- a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).
- Bjoern Peters
- OBI branch derived
- Could add specific objective specification
- Following OBI call November 2012,26th: it was decided there was no need for adding "achieves objective of drawing conclusion" as existing relations were providing equivalent ability. this note closes the issue and validates the class definition to be part of the OBI core
-editor = PRS
-
- study
- investigation
+
+
+
+ Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
+ chebi_ontology
+ leptons
+ CHEBI:36338
+
+ lepton
+
+
+
+ leptons
+ ChEBI
+
-
+
-
-
- population
- PMID12564891. Environ Sci Technol. 2003 Jan 15;37(2):223-8. Effects of historic PCB exposures on the reproductive success of the Hudson River striped bass population.
-
- a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area
- 1/28/2013, BP, on the call it was raised that we may want to switch to an external ontology for all populatin terms:
-http://code.google.com/p/popcomm-ontology/
- PERSON: Philippe Rocca-Serra
- adapted from Oxford English Dictionnary
- rem1: collection somehow always involve a selection process
-
- population
+
+
+
+ Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
+ chebi_ontology
+ baryons
+ CHEBI:36339
+
+ baryon
+
+
+
+ baryons
+ ChEBI
+
-
+
-
-
- protocol
- PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR.
-
- A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
- PlanAndPlannedProcess Branch
- OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)
-
- study protocol
- protocol
+
+
+ Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
+ fermion
+ chebi_ontology
+ fermions
+ CHEBI:36340
+
+ fermion
+
+
+
+ fermion
+ IUPAC
+
+
+
+
+
+ fermions
+ ChEBI
+
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- interpreting data
- Concluding that a gene is upregulated in a tissue sample based on the band intensity in a western blot. Concluding that a patient has a infection based on measurement of an elevated body temperature and reported headache. Concluding that there were problems in an investigation because data from PCR and microarray are conflicting. Concluding that 'defects in gene XYZ cause cancer due to improper DNA repair' based on data from experiments in that study that gene XYZ is involved in DNA repair, and the conclusion of a previous study that cancer patients have an increased number of mutations in this gene.
-
- A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion
- PERSON: Bjoern Peters
- PERSON: Jennifer Fostel
- Bjoern Peters
-
- drawing a conclusion based on data
+
+
+ A particle smaller than an atom.
+ Wikipedia:Subatomic_particle
+ chebi_ontology
+ subatomic particles
+ CHEBI:36342
+
+ subatomic particle
+
+
+
+ subatomic particles
+ ChEBI
+
-
+
-
-
-
-
-