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Handle sourceLocation values to support deletions. #111

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jakebeal opened this issue Oct 29, 2019 · 1 comment
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Handle sourceLocation values to support deletions. #111

jakebeal opened this issue Oct 29, 2019 · 1 comment
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@jakebeal
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Issue #106 is about being able to split where something goes in a new genome using Location objects on a SequenceAnnotation.
This issue is the complement, about getting correct sequences from Location objects in the sourceLocation field of a Component.

For example, we should be able to pull a 2 kb insert construct out of a 5 kb plasmid by having a sourceLocation of e.g., 2001-4000.

Another example: replacing a 2 kb section of a genome might have a sourceLocation of 1-1000 and 3001-10000.

@jakebeal jakebeal added this to the 2.3.3 milestone Nov 14, 2019
@bbartley
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bbartley commented Dec 6, 2019

ComponentDefinition.compile method can now sample subsequences of a subcomponent using SourceLocations, implemented in SynBioDex/libSBOL@23405c8

@bbartley bbartley closed this as completed Dec 6, 2019
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