From b2f7dc16dbd8bedbc0ad812764a450563b5da05b Mon Sep 17 00:00:00 2001 From: Mike Jiang Date: Sat, 14 Nov 2020 18:52:03 -0800 Subject: [PATCH] Create build.yml --- .github/workflows/build.yml | 128 ++++++++++++++++++++++++++++++++++++ 1 file changed, 128 insertions(+) create mode 100644 .github/workflows/build.yml diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml new file mode 100644 index 00000000..9de8eb45 --- /dev/null +++ b/.github/workflows/build.yml @@ -0,0 +1,128 @@ +# This workflow uses actions that are not certified by GitHub. +# They are provided by a third-party and are governed by +# separate terms of service, privacy policy, and support +# documentation. +# + +name: build + +on: + push: + branches: [ release, master ] + pull_request: + branches: [ release, master ] + +jobs: + build: + runs-on: ${{ matrix.config.os }} + name: ${{ matrix.config.os }} (${{ matrix.r }}) + strategy: + fail-fast: false + matrix: + r: ['release', 'devel'] + config: + - {os: windows-latest, suffix: 'zip'} + - {os: macOS-latest, suffix: 'tgz'} + - {os: ubuntu-16.04, suffix: 'tar.gz', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} + isMaster: + - ${{ contains(github.ref, 'master') }} + exclude: + - isMaster: false + r: devel + - isMaster: true + r: release + env: + R_REMOTES_NO_ERRORS_FROM_WARNINGS: true + RSPM: ${{ matrix.config.rspm }} + + steps: + - uses: actions/checkout@v2 + - name: Set up R ${{ matrix.r }} + uses: r-lib/actions/setup-r@master + with: + r-version: ${{ matrix.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + + - uses: r-lib/actions/setup-pandoc@v1 + + - name: set token for cytoinstaller(and remotes) to increase github API rate limit + env: + SUPER_SECRET: ${{ secrets.CYTOINSTALLER_TOKEN }} + run: echo "GITHUB_TOKEN=$SUPER_SECRET" >> $GITHUB_ENV + + - name: Query dependencies + run: | + install.packages('remotes') + saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) + writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") + shell: Rscript {0} + + - name: Get bioc ver + run: echo "bioc_ver=$(Rscript -e 'writeLines(as.character(remotes::bioc_version()))')" >> $GITHUB_ENV + shell: bash + + - name: Cache R packages + if: runner.os != 'Windows' + uses: actions/cache@v2 + with: + path: ${{ env.R_LIBS_USER }} + key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- + + - name: check bioc ver + run: echo $bioc_ver + shell: bash + + - name: Install system dependencies + if: runner.os == 'Linux' + run: | + while read -r cmd + do + eval sudo $cmd + done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "16.04"))') + sudo apt-get install -y libcurl4-openssl-dev + + - name: Install dependencies + run: | + remotes::install_cran(c("rcmdcheck", "devtools")) + remotes::install_github("RGLab/cytoinstaller") + cytoinstaller::cyto_install_deps(dependencies = TRUE) + shell: Rscript {0} + + - name: check rate limit + run: | + gh::gh("GET /rate_limit")$resources$core$remaining + shell: Rscript {0} + + - name: Check + env: + _R_CHECK_CRAN_INCOMING_REMOTE_: false + run: rcmdcheck::rcmdcheck(args = c("--no-manual"), check_dir = "check") + shell: Rscript {0} + + - name: Upload check results + if: failure() + uses: actions/upload-artifact@main + with: + name: ${{ runner.os }}-r${{ matrix.config.r }}-results + path: check + + - name: build src pkg + if: runner.os == 'Linux' + run: devtools::build() + shell: Rscript {0} + + - name: build bin pkg + if: runner.os != 'Linux' + run: devtools::build(binary = TRUE) + shell: Rscript {0} + + - name: Upload Release Asset + uses: svenstaro/upload-release-action@v2 + with: + repo_token: ${{ secrets.GITHUB_TOKEN }} + file: '../*.${{ matrix.config.suffix }}' + file_glob: true + tag: bioc_${{ env.bioc_ver}} + overwrite: true + body: "This is my release text"