xyplot for flowClust

[mikejiang]

currently it is not possible to use flowViz::xyplot to visualize gating results (ellipse) from flowClust because flowViz does not have native support for "tmixFilterResult".

We can either :
1.add this support to flowViz by adding new S4 method:
glpolygon( x="tmixFilterResult", data="flowFrame"),
This is a pretty generic and clean solution, the only downside is putting flowClust to the dependency list of flowViz.

2.Or add a panel function in flowClust which uses flowViz and also add its own gate plotting routine.

I will probably go with the second solution for now.

[raphg]

I think option 2 makes sense for now.

Raphael Gottardo, Associate Member
http://www.rglab.org
Fred Hutchinson Cancer Research Center
Vaccine and Infectious Disease Division
Public Health Sciences Division

On Jun 11, 2012, at 5:35 PM, mikejiang wrote:

currently it is not possible to use flowViz::xyplot to visualize gating results (ellipse) from flowClust because flowViz does not have native support for "tmixFilterResult".

We can either :
1.add this support to flowViz by adding new S4 method:
glpolygon( x="tmixFilterResult", data="flowFrame"),
This is a pretty generic and clean solution, the only downside is putting flowClust to the dependency list of flowViz.

2.Or add a panel function in flowClust which uses flowViz and also add its own gate plotting routine.

I will probably go with the second solution for now.

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Reply to this email directly or view it on GitHub:
https://github.com/mikejiang/flowViz/issues/3