Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to combine multiple lists of cytoframes/cytocq data objects into one #10

Open
anderto opened this issue Aug 9, 2024 · 0 comments
Open

Comments

@anderto
Copy link

anderto commented Aug 9, 2024

library(flowCore)
library(flowWorkspace)
library(cytoqc)

#Load the FCS
files <- list.files(data_dir, ".fcs", full.names = TRUE)
cqc_data <- cqc_load_fcs(files)
cqc_data

cytoqc data:

21 samples

#However, I have > 1500 fcs files, and have to split the task in several steps, to avoid errors. Thus, I load a subset of the files, and #repeat this several times, resulting in approximately 10 cqc_data objects, and I want to combine these objects in the end.:

cqc_data_1 <- cqc_load_fcs(files[1:3])
cqc_data_2 <- cqc_load_fcs(files[4:6])
cqc_data_3 <- cqc_load_fcs(files[7:21])

#How do I combine the lists cqc_data_1, cqc_data_2, cqc_data_3 into one list of cytoframes/cqc_cf_list for further analyses in the #cytoqc pipeline?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant