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I downloaded the merged dataset (covid19_datasets.tar.gz) from the website (https://atlas.fredhutch.org/fredhutch/covid/), but I'm unable to read the datafile into SingleCellExperiment through R. I used
Read10X_h5(filename="covid19_datasets.tar.gz")
but it returns
Error in `[[.H5File`(infile, paste0(genome, "/data")) :
An object with name active.ident/data does not exist in this group
I was also unable to read all the hdf5 files on the website too with Read10X_h5, it gave me the same error. May I know how to fix it? My Seurat version is 4.1.1, and my R version is 4.2.0.
The text was updated successfully, but these errors were encountered:
Hi,
I downloaded the merged dataset (
covid19_datasets.tar.gz
) from the website (https://atlas.fredhutch.org/fredhutch/covid/), but I'm unable to read the datafile intoSingleCellExperiment
through R. I usedbut it returns
I was also unable to read all the hdf5 files on the website too with
Read10X_h5
, it gave me the same error. May I know how to fix it? My Seurat version is 4.1.1, and my R version is 4.2.0.The text was updated successfully, but these errors were encountered: