Merge pull request #6 from Imageomics/infrastructure-info

Add infrastructure info

docs/index.md

@@ -30,10 +30,30 @@ Discover new tools to help:
 
 - [Virtual Environments](wiki-guide/Virtual-Environments.md): Summary of `conda` and `pip` environments: how to make, use, and share them.
 
-### Other pages of note
+
+## Collaborative Infrastructure We Use
+
+- GitHub
+    - [Institute Code Repositories](https://github.com/Imageomics) where we store our code (software + tools).
+    - GitHub's [Docs](https://docs.github.com/en)
+        - [Repositories](https://docs.github.com/en/repositories)
+        - [GitHub Projects](https://docs.github.com/en/issues/planning-and-tracking-with-projects)
+- Hugging Face
+    - [Imageomics Organization page](https://huggingface.co/imageomics) where we store our datasets and models (and their metadata).
+    - Additionally, use [Hugging Face Spaces](https://huggingface.co/docs/hub/spaces) to run demos of models and other projects.
+    - Hugging Face's [Docs](https://huggingface.co/docs)
+        - [Model Hub](https://huggingface.co/docs/hub/models-the-hub)
+        - [Datasets](https://huggingface.co/docs/hub/datasets-overview)
+
+### Collaborative Infrastructure Diagram
+![tech_infrastructure_diagram](wiki-guide/images/index/382108831-1173cd79-db94-4326-8b6e-dcbdeb8939cd.png)
+
+
+## Other pages of note
 - [Glossary for Imageomics](wiki-guide/Glossary-for-Imageomics.md): Collection of terms used in imageomics. The goal is to ensure all participating domains are represented, thus facilitating interdisciplinary communication. This is a group effort, please check it out and add terms you think should be there!
 - [Command Line Cheat Sheet](wiki-guide/Command-Line-Cheat-Sheet.md): Collection of useful bash, emacs, and git commands.
 
+
 <br>
 <br>
 

docs/wiki-guide/Technical-Infrastructure.md

@@ -0,0 +1,21 @@
+# Compute Infrastructure We Use
+
+## Overview
+Overall [Infrastructure Chart](https://docs.google.com/spreadsheets/d/1JSOi5pp2Y8Utj_npzKcYmvAxGncgmvP2gait5H0oYKk/edit?usp=sharing) with system specifications and notes.
+
+- [The Ohio Supercomputing Center (OSC)](https://www.osc.edu/): Large compute resource accessible through `ssh` or OnDemand (web) platform.
+    - [Globus Endpoint](https://www.globus.org/) — this is the preferred transfer method for collaborations, especially for large data.
+    - OnDemand page: [info](https://www.osc.edu/resources/online_portals/ondemand), [login]( https://ondemand.osc.edu)
+    - myOSC client portal: [info](https://www.osc.edu/supercomputing/portals/client_portal), [login](https://my.osc.edu/acprod/odb_osc/r/osc/portal/login_desktop?clear=101)
+- Imageomics dedicated GPU server: _Internal_ server, hosts our CVAT instance.
+    - [Usage and access guide (_internal_ )](https://github.com/Imageomics/internal-guidelines/wiki/Imageomics-GPU-Server)
+    - [CVAT user guide](https://github.com/Imageomics/kabr-tools/wiki/CVAT-User-Guide)
+- NSF ACCESS Accelerate Allocation: NCSA Delta GPU credits
+- [Amazon Web Services (AWS)](https://aws.amazon.com/?nc2=h_lg): Basic to extremely powerful, abundant (though finite) resources, high cost.
+    - Used sparingly for urgent deadlines when other compute is not available (generally hasn't been available at those times either, though) or to host projects that cannot be hosted effectively through a Hugging Face Space.
+    - [AWS usage guidelines (_internal_ )](https://github.com/Imageomics/internal-guidelines/wiki/AWS-@-Imagomics)
+
+# Other Compute Resources We've Used or Considered
+
+- OpenAI Researcher Access Program
+- NAIRR Pilot Program

mkdocs.yaml

@@ -85,4 +85,5 @@ nav:
       - "Glossary for Imageomics": wiki-guide/Glossary-for-Imageomics.md
       - "Handling API Keys": wiki-guide/Handling-API-Keys.md
       - "Helpful Tools": wiki-guide/Helpful-Tools-for-your-Workflow.md
+      - "Technical Infrastructure": wiki-guide/Technical-Infrastructure.md
       - "Virtual Environments": wiki-guide/Virtual-Environments.md