From 37381959bfaa9a50dbbb981da63d69e846cafa13 Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Fri, 12 Jan 2024 16:40:35 -0300 Subject: [PATCH] Refact (#2) * update dependencies * updates for pylint * rearrange imports and remove field name * update repository link * refact argument parser * downgrade python version * update test files --------- Co-authored-by: Anita Caron --- pyproject.toml | 4 +- src/relation_validator/__main__.py | 17 +- src/relation_validator/utils/utils.py | 24 +- src/relation_validator/validator.py | 13 +- tests/ref-organ-relations.csv | 2393 +++++++++++++++++++++++++ tests/test-ont-versions.json | 233 +++ tests/test-parser.yaml | 2 +- tests/test-results.csv | 2278 +++++++++++++++++++++++ 8 files changed, 4935 insertions(+), 29 deletions(-) create mode 100644 tests/ref-organ-relations.csv create mode 100644 tests/test-ont-versions.json create mode 100644 tests/test-results.csv diff --git a/pyproject.toml b/pyproject.toml index 18320ad..ebe0ebc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,10 +5,10 @@ description = "This package validates a list of relationships between two terms authors = ["Anita Caron "] readme = "README.md" packages = [{include = "relation_validator", from="src"}] -repository = "https://github.com/anitacaron/relation-validator" +repository = "https://github.com/INCATools/relation-validator" [tool.poetry.dependencies] -python = "^3.9" +python = "^3.8" pyaml = "^21.10.1" ruamel-yaml = "^0.17.21" oaklib = "^0.5.20" diff --git a/src/relation_validator/__main__.py b/src/relation_validator/__main__.py index 8993371..6fe96f2 100644 --- a/src/relation_validator/__main__.py +++ b/src/relation_validator/__main__.py @@ -1,3 +1,6 @@ +""" +Command-line application for the lib +""" import argparse import pathlib @@ -7,8 +10,7 @@ def main(): parser = argparse.ArgumentParser() subparsers = parser.add_subparsers( - help='Available dosdp actions', - dest='action' + help="Available relation-validator actions", ) parser_validate = subparsers.add_parser( @@ -19,7 +21,6 @@ def main(): parser_validate.add_argument( "-i", "--input", - action="store", type=pathlib.Path, required=True, help="yaml file with config" @@ -27,11 +28,11 @@ def main(): parser_validate.add_argument( "-o", "--output", - action="store", type=pathlib.Path, required=True, help="csv output filename" ) + parser_validate.set_defaults(func=validate) parser_ont_versions = subparsers.add_parser( name="ontologies_version", @@ -41,18 +42,14 @@ def main(): parser_ont_versions.add_argument( "-o", "--output", - action="store", type=pathlib.Path, required=True, help="json output filename" ) + parser_ont_versions.set_defaults(func=ontologies_version) args = parser.parse_args() - - if args.action == "validate": - validate(str(args.input), str(args.output)) - elif args.action == "ontologies_version": - ontologies_version(args.output) + args.func(args) if __name__ == "__main__": diff --git a/src/relation_validator/utils/utils.py b/src/relation_validator/utils/utils.py index 72f26a2..15728b9 100644 --- a/src/relation_validator/utils/utils.py +++ b/src/relation_validator/utils/utils.py @@ -12,6 +12,7 @@ {pairs} }} ?subject {property} ?object . + # LIMIT """ @@ -115,18 +116,18 @@ def get_config(entry) -> dict: """ Parse config file """ - if entry.endswith('.yaml') or entry.endswith('.yml'): - config = os.path.abspath(entry) - ryaml = YAML(typ='safe') - with open(config, "r", encoding="utf-8") as f: - try: - config = ryaml.load(f) - except YAMLError: - logging.info("Failed to load config: %s", config) - return config + if entry.suffix not in (".yaml" or ".yml"): + logging.error("Given path has unsupported file extension.") + return {} - logging.error("Given path has unsupported file extension.") - return False + config = os.path.abspath(entry) + ryaml = YAML(typ="safe") + with open(config, "r", encoding="utf-8") as f: + try: + config = ryaml.load(f) + except YAMLError: + logging.info("Failed to load config: %s", config) + return config def get_prefixes(text, prefix_map): @@ -148,6 +149,7 @@ def get_ontologies_version(): QUERY_VERSION = """ ?ontology a owl:Ontology . OPTIONAL { ?ontology owl:versionIRI ?version . } + # LIMIT """ response = query_ubergraph(QUERY_VERSION) diff --git a/src/relation_validator/validator.py b/src/relation_validator/validator.py index 0415502..52a0c1c 100644 --- a/src/relation_validator/validator.py +++ b/src/relation_validator/validator.py @@ -6,11 +6,14 @@ split_terms, verify_relationship) -def validate(config, filename): +def validate(args): """ Validate process """ - config = get_config(config) + config = get_config(args.input) + if not config: + return exit + data = pd.read_csv(config["filename"]) terms_pairs = get_pairs(data) @@ -23,13 +26,13 @@ def validate(config, filename): data[["s", "o"]].apply(tuple, 1).isin(zip(terms_s, terms_o)) ] - rows_nv.to_csv(filename, index=False) + rows_nv.to_csv(args.output, index=False) -def ontologies_version(filename): +def ontologies_version(args): """ Get ontologies' version """ ont_version = get_ontologies_version() - with open(filename, 'w', encoding='utf-8') as f: + with open(args.output, "w", encoding="utf-8") as f: json.dump(ont_version, f, ensure_ascii=False, indent=2) diff --git a/tests/ref-organ-relations.csv b/tests/ref-organ-relations.csv new file mode 100644 index 0000000..c5e1647 --- /dev/null +++ b/tests/ref-organ-relations.csv @@ -0,0 +1,2393 @@ +ref_organ,ref_organ_part,o,s,olabel,slabel +http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,UBERON:0000955,UBERON:0004720,Brain,cerebellar vermis +http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,UBERON:0000955,UBERON:0006093,Brain,precuneus cortex +http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,UBERON:0000955,UBERON:0002657,Brain,posterior parahippocampal gyrus +http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,UBERON:0000955,UBERON:0002771,Brain,middle temporal gyrus 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+http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_transverse_colon,UBERON:0001157,UBERON:0022277,transverse colon,hepatic flexure of colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_transverse_colon,UBERON:0001157,UBERON:0001153,transverse colon,caecum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_transverse_colon,UBERON:0001157,UBERON:0001156,transverse colon,ascending colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ascending_colon,UBERON:0001156,UBERON:0022277,ascending colon,hepatic flexure of colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_descending_colon,UBERON:0001158,UBERON:0001052,descending colon,rectum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_descending_colon,UBERON:0001158,UBERON:0001159,descending colon,sigmoid colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ileocecal_valve,UBERON:0000569,UBERON:0001153,ileocecal valve,caecum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ileocecal_valve,UBERON:0000569,UBERON:0001156,ileocecal valve,ascending colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_sigmoid_colon,UBERON:0001159,UBERON:0001052,sigmoid colon,rectum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_splenic_flexure_of_colon,UBERON:0022276,UBERON:0001157,splenic flexure of colon,transverse colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_splenic_flexure_of_colon,UBERON:0022276,UBERON:0001158,splenic flexure of colon,descending colon +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002134,Heart,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002094,Heart,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002080,Heart,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002078,Heart,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002084,Heart,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002079,Heart,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,UBERON:0000948,UBERON:0002135,Heart,mitral valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002134,interventricular septum,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002080,interventricular septum,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002078,interventricular septum,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002084,interventricular septum,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_cardiac_atrium,UBERON:0002079,UBERON:0002078,left cardiac atrium,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002094,heart left ventricle,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002078,heart left ventricle,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002079,heart left ventricle,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002135,heart left ventricle,mitral valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002134,heart right ventricle,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002094,heart right ventricle,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002078,heart right ventricle,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002084,heart right ventricle,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002079,heart right ventricle,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002135,heart right ventricle,mitral valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_papillary_muscle_of_heart,UBERON:0002494,UBERON:0002134,papillary muscle of heart,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_papillary_muscle_of_heart,UBERON:0002494,UBERON:0002094,papillary muscle of heart,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_papillary_muscle_of_heart,UBERON:0002494,UBERON:0002080,papillary muscle of heart,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_papillary_muscle_of_heart,UBERON:0002494,UBERON:0002078,papillary muscle of heart,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_papillary_muscle_of_heart,UBERON:0002494,UBERON:0002084,papillary muscle of heart,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002134,valve,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002080,valve,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002078,valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002084,valve,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002079,valve,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002135,valve,mitral valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_aortic_valve,UBERON:0002137,UBERON:0002134,aortic valve,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_aortic_valve,UBERON:0002137,UBERON:0002080,aortic valve,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_aortic_valve,UBERON:0002137,UBERON:0002078,aortic valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_aortic_valve,UBERON:0002137,UBERON:0002079,aortic valve,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_pulmonary_valve,UBERON:0002146,UBERON:0002137,pulmonary valve,aortic valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_pulmonary_valve,UBERON:0002146,UBERON:0002080,pulmonary valve,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_pulmonary_valve,UBERON:0002146,UBERON:0002078,pulmonary valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002094,mitral valve,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002078,mitral valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002084,mitral valve,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002079,mitral valve,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tricuspid_valve,UBERON:0002134,UBERON:0002080,tricuspid valve,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tricuspid_valve,UBERON:0002134,UBERON:0002078,tricuspid valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,UBERON:0004538,UBERON:0001284,Left Kidney,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,UBERON:0004538,UBERON:0002189,Left Kidney,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,UBERON:0004538,UBERON:0004200,Left Kidney,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_kidney_capsule_L,UBERON:0002015,UBERON:0001284,kidney capsule,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_kidney_capsule_L,UBERON:0002015,UBERON:0002189,kidney capsule,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_kidney_capsule_L,UBERON:0002015,UBERON:0004200,kidney capsule,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_hilum_of_kidney_L,UBERON:0008716,UBERON:0002015,hilum of kidney,kidney capsule +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_hilum_of_kidney_L,UBERON:0008716,UBERON:0001284,hilum of kidney,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_hilum_of_kidney_L,UBERON:0008716,UBERON:0004200,hilum of kidney,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_hilum_of_kidney_L,UBERON:0008716,UBERON:0002189,hilum of kidney,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_hilum_of_kidney_L,UBERON:0008716,UBERON:0004200,hilum of kidney,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_medulla_L,UBERON:0000362,UBERON:0008716,renal medulla,hilum of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_medulla_L,UBERON:0000362,UBERON:0002015,renal medulla,kidney capsule +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_medulla_L,UBERON:0000362,UBERON:0001284,renal medulla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_medulla_L,UBERON:0000362,UBERON:0002189,renal medulla,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_medulla_L,UBERON:0000362,UBERON:0004200,renal medulla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_pyramid_L,UBERON:0004200,UBERON:0008716,renal pyramid,hilum of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_pyramid_L,UBERON:0004200,UBERON:0002015,renal pyramid,kidney capsule +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_pyramid_L,UBERON:0004200,UBERON:0001284,renal pyramid,renal column 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+http://purl.org/ccf/latest/ccf.owl#VHFSmallIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_duodenum,UBERON:0002114,UBERON:0002115,duodenum,jejunum +http://purl.org/ccf/latest/ccf.owl#VHFSmallIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_duodenum,UBERON:0002114,UBERON:0002116,duodenum,ileum +http://purl.org/ccf/latest/ccf.owl#VHFSmallIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_duodenal_ampulla,UBERON:0013644,UBERON:0002115,duodenal ampulla,jejunum +http://purl.org/ccf/latest/ccf.owl#VHFSmallIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_jejenum,UBERON:0002115,UBERON:0002116,jejunum,ileum +http://purl.org/ccf/latest/ccf.owl#VHFThymusV1.1,http://purl.org/ccf/latest/ccf.owl#VHFThymusV1.1,UBERON:0002370,UBERON:0005457,Thymus,left thymus lobe +http://purl.org/ccf/latest/ccf.owl#VHFThymusV1.1,http://purl.org/ccf/latest/ccf.owl#VHFThymusV1.1,UBERON:0002370,UBERON:0005469,Thymus,right thymus lobe +http://purl.org/ccf/latest/ccf.owl#VHFThymusV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_thymus_lobe_L,UBERON:0005457,UBERON:0005469,left thymus lobe,right thymus lobe +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L,UBERON:0001228,UBERON:0008716,renal papilla,hilum of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L,UBERON:0001228,UBERON:0002015,renal papilla,kidney capsule +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L,UBERON:0001228,UBERON:0002189,renal papilla,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_a,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_a,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_b,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_b,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_c,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_c,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_c,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_d,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_d,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_e,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_e,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_f,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_f,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_g,UBERON:0001228,UBERON:0008716,renal papilla,hilum of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_g,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_g,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_h,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_h,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_i,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_j,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_j,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_k,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_L_k,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0002015,renal papilla,kidney capsule +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0008716,renal papilla,hilum of kidney +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R,UBERON:0001228,UBERON:0002189,renal papilla,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_a,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_a,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_b,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_b,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_c,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_c,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_c,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_d,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_d,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_e,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_e,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_f,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_f,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_g,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_g,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_h,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_h,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_i,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_i,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_j,UBERON:0001228,UBERON:0001284,renal papilla,renal column +http://purl.org/ccf/latest/ccf.owl#VHFRightKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_renal_papilla_R_j,UBERON:0001228,UBERON:0004200,renal papilla,renal pyramid +http://purl.org/ccf/latest/ccf.owl#VHFUrinaryBladder,http://purl.org/ccf/latest/ccf.owl#VHFUrinaryBladder,UBERON:0001255,UBERON:0006082,Urinary Bladder,fundus of urinary bladder +http://purl.org/ccf/latest/ccf.owl#VHFUrinaryBladder,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_trigone_of_urinary_bladder,UBERON:0001257,UBERON:0004230,trigone of urinary bladder,urinary bladder neck smooth muscle +http://purl.org/ccf/latest/ccf.owl#VHFUrinaryBladder,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_trigone_of_urinary_bladder,UBERON:0001257,UBERON:0006082,trigone of urinary bladder,fundus of urinary bladder +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFUterus,UBERON:0000995,UBERON:0009853,Uterus,body of uterus +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFUterus,UBERON:0000995,UBERON:0000002,Uterus,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_body_of_uterus,UBERON:0009853,UBERON:0000002,body of uterus,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_cervix,UBERON:0000002,UBERON:0013760,uterine cervix,external cervical os +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_internal_cervical_os,UBERON:0013759,UBERON:0000002,internal cervical os,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_external_cervical_os,UBERON:0013760,UBERON:0000002,external cervical os,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,UBERON:0001987,UBERON:0004027,Placenta,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,UBERON:0001987,UBERON:0000305,Placenta,amnion +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_chorionic_plate,UBERON:0004027,UBERON:0000305,chorionic plate,amnion +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_amnion,UBERON:0000305,UBERON:0004027,amnion,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_cord,UBERON:0002331,UBERON:0004027,umbilical cord,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_cord,UBERON:0002331,UBERON:0000305,umbilical cord,amnion +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_artery_1,UBERON:0001310,UBERON:0004027,umbilical artery,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_artery_1,UBERON:0001310,UBERON:0000305,umbilical artery,amnion +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_artery_2,UBERON:0001310,UBERON:0002331,umbilical artery,umbilical cord +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_artery_2,UBERON:0001310,UBERON:0004027,umbilical artery,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_artery_2,UBERON:0001310,UBERON:0000305,umbilical artery,amnion +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_artery_2,UBERON:0001310,UBERON:0002066,umbilical artery,umbilical vein +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_vein,UBERON:0002066,UBERON:0004027,umbilical vein,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_umbilical_vein,UBERON:0002066,UBERON:0000305,umbilical vein,amnion +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,UBERON:0002240,UBERON:0006465,Spinal Cord,ninth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,UBERON:0002240,UBERON:0006466,Spinal Cord,tenth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,UBERON:0002240,UBERON:0006467,Spinal Cord,eleventh thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,UBERON:0002240,UBERON:0006455,Spinal Cord,seventh thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,UBERON:0002240,UBERON:0006448,Spinal Cord,first lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C1_segment_of_cervical_spinal_cord,UBERON:0006469,UBERON:0006489,c1 segment of cervical spinal cord,C2 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C2_segment_of_cervical_spinal_cord,UBERON:0006489,UBERON:0006488,c2 segment of cervical spinal cord,C3 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C3_segment_of_cervical_spinal_cord,UBERON:0006488,UBERON:0006490,c3 segment of cervical spinal cord,C4 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C4_segment_of_cervical_spinal_cord,UBERON:0006490,UBERON:0006491,c4 segment of cervical spinal cord,C5 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C5_segment_of_cervical_spinal_cord,UBERON:0006491,UBERON:0006492,c5 segment of cervical spinal cord,C6 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C6_segment_of_cervical_spinal_cord,UBERON:0006492,UBERON:0006493,c6 segment of cervical spinal cord,C7 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C7_segment_of_cervical_spinal_cord,UBERON:0006493,UBERON:0006470,c7 segment of cervical spinal cord,C8 segment of cervical spinal cord +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_C8_segment_of_cervical_spinal_cord,UBERON:0006470,UBERON:0006457,c8 segment of cervical spinal cord,first thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_first_thoracic_spinal_cord_segment,UBERON:0006457,UBERON:0006458,first thoracic spinal cord segment,second thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_second_thoracic_spinal_cord_segment,UBERON:0006458,UBERON:0006459,second thoracic spinal cord segment,third thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_third_thoracic_spinal_cord_segment,UBERON:0006459,UBERON:0006452,third thoracic spinal cord segment,fourth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_fourth_thoracic_spinal_cord_segment,UBERON:0006452,UBERON:0006453,fourth thoracic spinal cord segment,fifth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_fifth_thoracic_spinal_cord_segment,UBERON:0006453,UBERON:0006454,fifth thoracic spinal cord segment,sixth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_seventh_thoracic_spinal_cord_segment,UBERON:0006455,UBERON:0006456,seventh thoracic spinal cord segment,eighth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_eigth_thoracic_spinal_cord_segment,UBERON:0006456,UBERON:0006465,eighth thoracic spinal cord segment,ninth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_sixth_thoracic_spinal_cord_segment,UBERON:0006454,UBERON:0006455,sixth thoracic spinal cord segment,seventh thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ninth_thoracic_spinal_cord_segment,UBERON:0006465,UBERON:0006466,ninth thoracic spinal cord segment,tenth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tenth_thoracic_spinal_cord_segment,UBERON:0006466,UBERON:0006467,tenth thoracic spinal cord segment,eleventh thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_eleventh_thoracic_spinal_cord_segment,UBERON:0006467,UBERON:0006468,eleventh thoracic spinal cord segment,twelfth thoracic spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_twelfth_thoracic_spinal_cord_segment,UBERON:0006468,UBERON:0006448,twelfth thoracic spinal cord segment,first lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_first_lumbar_spinal_cord_segment,UBERON:0006448,UBERON:0006450,first lumbar spinal cord segment,second lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_second_lumbar_spinal_cord_segment,UBERON:0006450,UBERON:0006449,second lumbar spinal cord segment,third lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_third_lumbar_spinal_cord_segment,UBERON:0006449,UBERON:0006451,third lumbar spinal cord segment,fourth lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_fourth_lumbar_spinal_cord_segment,UBERON:0006451,UBERON:0006447,fourth lumbar spinal cord segment,fifth lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_fifth_lumbar_spinal_cord_segment,UBERON:0006447,UBERON:0006460,fifth lumbar spinal cord segment,first sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_first_sacral_spinal_cord_segment,UBERON:0006460,UBERON:0006461,first sacral spinal cord segment,second sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_second_sacral_spinal_cord_segment,UBERON:0006461,UBERON:0006462,second sacral spinal cord segment,third sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_third_sacral_spinal_cord_segment,UBERON:0006462,UBERON:0006463,third sacral spinal cord segment,fourth sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFLarynx,UBERON:0001737,UBERON:0001738,Larynx,thyroid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFLarynx,UBERON:0001737,UBERON:0002375,Larynx,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_laryngeal_cartilage,UBERON:0001739,UBERON:0001738,laryngeal cartilage,thyroid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_laryngeal_cartilage,UBERON:0001739,UBERON:0002375,laryngeal cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_arytenoid_cartilage,UBERON:0001740,UBERON:0001738,arytenoid cartilage,thyroid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_arytenoid_cartilage,UBERON:0001740,UBERON:0002375,arytenoid cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_epiglotic_cartilage,UBERON:0001742,UBERON:0001738,epiglottic cartilage,thyroid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_epiglotic_cartilage,UBERON:0001742,UBERON:0002375,epiglottic cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_thyroid_cartilage,UBERON:0001738,UBERON:0002375,thyroid cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFMainBronchus,http://purl.org/ccf/latest/ccf.owl#VHFMainBronchus,UBERON:0002182,UBERON:0002177,Main Bronchus,Right Main Bronchus +http://purl.org/ccf/latest/ccf.owl#VHFMainBronchus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_main_bronchus,UBERON:0002178,UBERON:0002177,left main bronchus,Right Main Bronchus +http://purl.org/ccf/latest/ccf.owl#VHFTrachea,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_trachea,UBERON:0003126,UBERON:0003604,trachea,trachea cartilage +http://purl.org/ccf/latest/ccf.owl#VHFTrachea,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tracheal_cartilage,UBERON:0003604,UBERON:0006679,trachea cartilage,carina of trachea +http://purl.org/ccf/latest/ccf.owl#VHFTrachea,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tracheal_cartilage,UBERON:0003604,UBERON:0003126,trachea cartilage,trachea +http://purl.org/ccf/latest/ccf.owl#VHFTrachea,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_carina,UBERON:0006679,UBERON:0003126,carina of trachea,trachea \ No newline at end of file diff --git a/tests/test-ont-versions.json b/tests/test-ont-versions.json new file mode 100644 index 0000000..336abd8 --- /dev/null +++ b/tests/test-ont-versions.json @@ -0,0 +1,233 @@ +[ + { + "ontology": "aism/aism-base.owl", + "version": "aism/releases/2023-04-14/aism-base.owl" + }, + { + "ontology": "bspo.owl", + "version": "bspo/releases/2023-05-27/bspo.owl" + }, + { + "ontology": "cl/cl-base.owl", + "version": "cl/releases/2024-01-04/cl-base.owl" + }, + { + "ontology": "cob/cob-base.owl", + "version": "cob/releases/2023-05-12/cob-base.owl" + }, + { + "ontology": "cob/components/cob-to-external.owl", + "version": "cob/releases/2023-05-12/components/cob-to-external.owl" + }, + { + "ontology": "colao/colao-base.owl", + "version": "colao/releases/2023-04-08/colao-base.owl" + }, + { + "ontology": "dpo/dpo-base.owl", + "version": "dpo/releases/2023-12-08/dpo-base.owl" + }, + { + "ontology": "eco/eco-base.owl", + "version": "eco/releases/2023-09-03/eco-base.owl" + }, + { + "ontology": "iao.owl", + "version": "iao/2022-11-07/iao.owl" + }, + { + "ontology": "ecto/ecto-base.owl", + "version": "ecto/releases/2023-02-14/ecto-base.owl" + }, + { + "ontology": "emapa.owl", + "version": "emapa/releases/2023-11-14/emapa.owl" + }, + { + "ontology": "envo/envo-base.owl", + "version": "envo/releases/2023-02-13/envo-base.owl" + }, + { + "ontology": "fbbt/fbbt-base.owl", + "version": "fbbt/releases/2023-12-07/fbbt-base.owl" + }, + { + "ontology": "fbcv/fbcv-base.owl", + "version": "fbcv/releases/2023-12-08/fbcv-base.owl" + }, + { + "ontology": "fbdv/fbdv-base.owl", + "version": "fbdv/releases/2023-12-07/fbdv-base.owl" + }, + { + "ontology": "fypo/fypo-base.owl", + "version": "fypo/releases/2023-12-29/fypo-base.owl" + }, + { + "ontology": "go/extensions/go-bfo-bridge.owl" + }, + { + "ontology": "go/go-base.owl", + "version": "go/releases/2023-11-15/go-base.owl" + }, + { + "ontology": "hp/hp-base.owl", + "version": "hp/releases/2023-10-09/hp-base.owl" + }, + { + "ontology": "lepao/lepao-base.owl", + "version": "lepao/releases/2023-02-18/lepao-base.owl" + }, + { + "ontology": "ma.owl", + "version": "ma/releases/2017-02-07/ma.owl" + }, + { + "ontology": "maxo/maxo-base.owl", + "version": "maxo/releases/2023-12-01/maxo-base.owl" + }, + { + "ontology": "mi.owl" + }, + { + "ontology": "mmo.owl", + "version": "mmo/2.123/mmo.owl" + }, + { + "ontology": "mondo/mondo-base.owl", + "version": "mondo/releases/2024-01-03/mondo-base.owl" + }, + { + "ontology": "ncbitaxon.owl", + "version": "ncbitaxon/2023-12-12/ncbitaxon.owl" + }, + { + "ontology": "ncit.owl", + "version": "ncit/releases/2023-10-19/ncit.owl" + }, + { + "ontology": "mp/mp-base.owl", + "version": "mp/releases/2023-12-19/mp-base.owl" + }, + { + "ontology": "nbo/nbo-base.owl", + "version": "nbo/releases/2023-07-04/nbo-base.owl" + }, + { + "ontology": "oba/oba-base.owl", + "version": "oba/releases/2023-12-07/oba-base.owl" + }, + { + "ontology": "obi/obi-base.owl", + "version": "obi/2023-09-20/obi-base.owl" + }, + { + "ontology": "pato/pato-base.owl", + "version": "pato/releases/2023-05-18/pato-base.owl" + }, + { + "ontology": "pcl/pcl-base.owl", + "version": "pcl/releases/2024-01-04/pcl-base.owl" + }, + { + "ontology": "pco/pco-base.owl", + "version": "pco/releases/2021-05-03/pco-base.owl" + }, + { + "ontology": "ro/ro-base.owl", + "version": "ro/releases/2023-08-18/ro-base.owl" + }, + { + "ontology": "so.owl", + "version": "so/2021-11-22/so.owl" + }, + { + "ontology": "uberon/bridge/cl-bridge-to-caro.owl", + "version": "uberon/releases/2023-12-08/bridge/cl-bridge-to-caro.owl" + }, + { + "ontology": "uberon/bridge/cl-bridge-to-fbbt.owl", + "version": "uberon/releases/2023-12-08/bridge/cl-bridge-to-fbbt.owl" + }, + { + "ontology": "uberon/bridge/uberon-bridge-to-caro.owl", + "version": "uberon/releases/2023-12-08/bridge/uberon-bridge-to-caro.owl" + }, + { + "ontology": "uberon/bridge/uberon-bridge-to-fbbt.owl", + "version": "uberon/releases/2023-12-08/bridge/uberon-bridge-to-fbbt.owl" + }, + { + "ontology": "uberon/uberon-base.owl", + "version": "uberon/releases/2023-12-08/uberon-base.owl" + }, + { + "ontology": "wbbt/wbbt-base.owl", + "version": "wbbt/releases/2024-01-04/wbbt-base.owl" + }, + { + "ontology": "wbls/wbls-base.owl", + "version": "wbls/releases/2023-09-26/wbls-base.owl" + }, + { + "ontology": "wbphenotype/wbphenotype-base.owl", + "version": "wbphenotype/releases/2023-09-26/wbphenotype-base.owl" + }, + { + "ontology": "zfa/zfa-base.owl", + "version": "zfa/releases/2022-12-09/zfa-base.owl" + }, + { + "ontology": "https://w3id.org/orcidio/orcidio.owl" + }, + { + "ontology": "pr/pr-asserted.owl", + "version": "pr/68.0/pr-asserted.owl" + }, + { + "ontology": "po.owl", + "version": "po/releases/2023-07-13/po.owl" + }, + { + "ontology": "https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/ppo.owl", + "version": "https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/releases/2018-10-26/ppo.owl" + }, + { + "ontology": "apo.owl", + "version": "apo/releases/2023-12-07/apo.owl" + }, + { + "ontology": "mmusdv.owl" + }, + { + "ontology": "foodon.owl", + "version": "foodon/releases/2023-05-03/foodon.owl" + }, + { + "ontology": "to.owl", + "version": "to/releases/2023-07-17/to.owl" + }, + { + "ontology": "peco.owl", + "version": "peco/releases/2023-11-10/peco.owl" + }, + { + "ontology": "mro.owl", + "version": "mro/2023-12-21/mro.owl" + }, + { + "ontology": "hao.owl", + "version": "hao/2023-06-01/hao.owl" + }, + { + "ontology": "clao.owl", + "version": "clao/releases/2021-09-27/clao.owl" + }, + { + "ontology": "oarcs.owl", + "version": "hao/2019-04-18/hao.owl" + }, + { + "ontology": "http://translator.renci.org/ubergraph-axioms.ofn" + } +] \ No newline at end of file diff --git a/tests/test-parser.yaml b/tests/test-parser.yaml index 6e3bd87..68fd2d6 100644 --- a/tests/test-parser.yaml +++ b/tests/test-parser.yaml @@ -4,4 +4,4 @@ relationships: connected_to: RO:0001025 has_soma_location: RO:0002100 -filename: tests/review_file.csv \ No newline at end of file +filename: tests/ref-organ-relations.csv \ No newline at end of file diff --git a/tests/test-results.csv b/tests/test-results.csv new file mode 100644 index 0000000..4cf136f --- /dev/null +++ b/tests/test-results.csv @@ -0,0 +1,2278 @@ +ref_organ,ref_organ_part,o,s,olabel,slabel +http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,http://purl.org/ccf/latest/ccf.owl#VHMaleOrgans_Allen_brain_Hemisphere_L,UBERON:0002812,UBERON:0002771,left cerebral hemisphere,middle temporal gyrus +http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain,http://purl.org/ccf/latest/ccf.owl#VHMaleOrgans_Allen_brain_Hemisphere_L,UBERON:0002812,UBERON:0002769,left cerebral hemisphere,superior temporal gyrus 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+http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_efferent_lymph_node,UBERON:0010397,UBERON:0002194,efferent lymphatic vessel,capsule of lymph node +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_medulla_of_lymph_node,UBERON:0002007,UBERON:0004536,medulla of lymph node,Lymph vasculature +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_medulla_of_lymph_node,UBERON:0002007,UBERON:0010748,medulla of lymph node,lymph node follicle +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_medulla_of_lymph_node,UBERON:0002007,UBERON:0010417,medulla of lymph node,lymph node T cell domain +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_medulla_of_lymph_node,UBERON:0002007,UBERON:0002194,medulla of lymph node,capsule of lymph node +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_paracortex,UBERON:0010417,UBERON:0004536,lymph node t cell domain,Lymph vasculature +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_paracortex,UBERON:0010417,UBERON:0010748,lymph node t cell domain,lymph node follicle +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_paracortex,UBERON:0010417,UBERON:0002007,lymph node t cell domain,medulla of lymph node +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_paracortex,UBERON:0010417,UBERON:0002194,lymph node t cell domain,capsule of lymph node +http://purl.org/ccf/latest/ccf.owl#VHFLymphNode,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_Yao_blood_vasculature,UBERON:0004536,UBERON:0010748,lymph vasculature,lymph node follicle 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+http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_transverse_colon,UBERON:0001157,UBERON:0001153,transverse colon,caecum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_transverse_colon,UBERON:0001157,UBERON:0001156,transverse colon,ascending colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ascending_colon,UBERON:0001156,UBERON:0022277,ascending colon,hepatic flexure of colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_descending_colon,UBERON:0001158,UBERON:0001052,descending colon,rectum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_descending_colon,UBERON:0001158,UBERON:0001159,descending colon,sigmoid colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ileocecal_valve,UBERON:0000569,UBERON:0001153,ileocecal valve,caecum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_ileocecal_valve,UBERON:0000569,UBERON:0001156,ileocecal valve,ascending colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_sigmoid_colon,UBERON:0001159,UBERON:0001052,sigmoid colon,rectum +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_splenic_flexure_of_colon,UBERON:0022276,UBERON:0001157,splenic flexure of colon,transverse colon +http://purl.org/ccf/latest/ccf.owl#VHFLargeIntestine,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_splenic_flexure_of_colon,UBERON:0022276,UBERON:0001158,splenic flexure of colon,descending colon +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002134,interventricular septum,tricuspid valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002080,interventricular septum,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002078,interventricular septum,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_interventricular_septum,UBERON:0002094,UBERON:0002084,interventricular septum,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_cardiac_atrium,UBERON:0002079,UBERON:0002078,left cardiac atrium,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002094,heart left ventricle,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002078,heart left ventricle,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002079,heart left ventricle,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_ventricle,UBERON:0002084,UBERON:0002135,heart left ventricle,mitral valve +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_right_ventricle,UBERON:0002080,UBERON:0002134,heart right ventricle,tricuspid valve 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muscle of heart,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002080,valve,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002078,valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002084,valve,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_valve,UBERON:0003978,UBERON:0002079,valve,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_aortic_valve,UBERON:0002137,UBERON:0002134,aortic valve,tricuspid valve 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+http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_pulmonary_valve,UBERON:0002146,UBERON:0002078,pulmonary valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002094,mitral valve,interventricular septum +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002078,mitral valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002084,mitral valve,heart left ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_mitral_valve,UBERON:0002135,UBERON:0002079,mitral valve,left cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tricuspid_valve,UBERON:0002134,UBERON:0002080,tricuspid valve,heart right ventricle +http://purl.org/ccf/latest/ccf.owl#VHFHeartV1.1,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tricuspid_valve,UBERON:0002134,UBERON:0002078,tricuspid valve,right cardiac atrium +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,UBERON:0004538,UBERON:0001284,Left Kidney,renal column +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,UBERON:0004538,UBERON:0002189,Left Kidney,outer cortex of kidney +http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,http://purl.org/ccf/latest/ccf.owl#VHFLeftKidneyV1.1,UBERON:0004538,UBERON:0004200,Left Kidney,renal pyramid 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bladder +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_body_of_uterus,UBERON:0009853,UBERON:0000002,body of uterus,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_internal_cervical_os,UBERON:0013759,UBERON:0000002,internal cervical os,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_external_cervical_os,UBERON:0013760,UBERON:0000002,external cervical os,uterine cervix +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,UBERON:0001987,UBERON:0004027,Placenta,chorionic plate +http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,UBERON:0001987,UBERON:0000305,Placenta,amnion 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+http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_third_lumbar_spinal_cord_segment,UBERON:0006449,UBERON:0006451,third lumbar spinal cord segment,fourth lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_fourth_lumbar_spinal_cord_segment,UBERON:0006451,UBERON:0006447,fourth lumbar spinal cord segment,fifth lumbar spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_fifth_lumbar_spinal_cord_segment,UBERON:0006447,UBERON:0006460,fifth lumbar spinal cord segment,first sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_first_sacral_spinal_cord_segment,UBERON:0006460,UBERON:0006461,first sacral spinal cord segment,second sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_second_sacral_spinal_cord_segment,UBERON:0006461,UBERON:0006462,second sacral spinal cord segment,third sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFSpinalCord,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_third_sacral_spinal_cord_segment,UBERON:0006462,UBERON:0006463,third sacral spinal cord segment,fourth sacral spinal cord segment +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_arytenoid_cartilage,UBERON:0001740,UBERON:0001738,arytenoid cartilage,thyroid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_arytenoid_cartilage,UBERON:0001740,UBERON:0002375,arytenoid cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_epiglotic_cartilage,UBERON:0001742,UBERON:0001738,epiglottic cartilage,thyroid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_epiglotic_cartilage,UBERON:0001742,UBERON:0002375,epiglottic cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFLarynx,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_thyroid_cartilage,UBERON:0001738,UBERON:0002375,thyroid cartilage,cricoid cartilage +http://purl.org/ccf/latest/ccf.owl#VHFMainBronchus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_left_main_bronchus,UBERON:0002178,UBERON:0002177,left main bronchus,Right Main Bronchus +http://purl.org/ccf/latest/ccf.owl#VHFTrachea,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_tracheal_cartilage,UBERON:0003604,UBERON:0003126,trachea cartilage,trachea +http://purl.org/ccf/latest/ccf.owl#VHFTrachea,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_carina,UBERON:0006679,UBERON:0003126,carina of trachea,trachea