From 3322bfd1cf4fbcdab7bebdd233d1a0685d7f42ec Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Wed, 6 Dec 2023 17:03:43 +0100 Subject: [PATCH] Improve usage of SSSOM-py (#666) * Improve SSSOM-py usage Relies on https://github.com/mapping-commons/sssom-py/pull/440 * Update pyproject.toml * Update sssom_utils.py * Update sssom_utils.py * Make code independent * Fix typo * Update lexical_indexer.py * Update test_sssom_matcher.py * Update test_sssom_matcher.py * Update pyproject.toml * Update lock * Update lexical_indexer.py * Update test_sssom_matcher.py * Update pyproject.toml * Lock * Lock again * Update reqs --- poetry.lock | 316 +++++++++--------- pyproject.toml | 2 +- .../interfaces/basic_ontology_interface.py | 4 +- .../utilities/lexical/lexical_indexer.py | 44 +-- src/oaklib/utilities/mapping/sssom_utils.py | 20 +- tests/test_utilities/test_sssom_matcher.py | 4 +- tox.ini | 6 + 7 files changed, 189 insertions(+), 207 deletions(-) diff --git a/poetry.lock b/poetry.lock index 3d343101c..1cc8c36bc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1157,48 +1157,57 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc [[package]] name = "fastobo" -version = "0.12.2" +version = "0.12.3" description = "Faultless AST for Open Biomedical Ontologies in Python." optional = false python-versions = ">=3.7" files = [ - {file = "fastobo-0.12.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e9fa244d85dea3bb6463124c777f1b529ac28381c4a6bf344d40bf6a16cc7ed7"}, - {file = "fastobo-0.12.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:1c9a06b06f842bc4a46190e21ea1dcefe9ce768e980616ace194c70b4a7c3ced"}, - {file = "fastobo-0.12.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:95583085a3942bcb2742e20bb02d25299e41d0bb72509e947a2ea5f42b28292a"}, - {file = "fastobo-0.12.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e33aac1949c52c2ea3aab94253d497721c2bcfc8af4147b9b72afa14e4d2d868"}, - {file = "fastobo-0.12.2-cp310-cp310-win_amd64.whl", hash = "sha256:48125e2e579d88a14b41d76928933f9f7f89b426ba41d1321a09cfefb74112e0"}, - {file = "fastobo-0.12.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:e383d66f9320537a5519d297576b96ecdc4e585530b7aa436f7d7fe57780efd3"}, - {file = "fastobo-0.12.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:510c43ebec01d86ca9df9d7dec044c39f6f430c49e67898513929f9d4ba34f4d"}, - {file = "fastobo-0.12.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:14988537442f224e6887f02967458be749c0e05bd222bac61fe1a707ab2c9b26"}, - {file = "fastobo-0.12.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8cae4051d2eccab1005bd7db95a657f4b492052005e621276e1c29325093c2ab"}, - {file = "fastobo-0.12.2-cp311-cp311-win_amd64.whl", hash = "sha256:cc9397dce2a6f1751e86c8c6a42ddd06fb8059d010ee7267544251c896517464"}, - {file = "fastobo-0.12.2-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:dce85230df3b765b61d05d866dc316bebeb4564c8d5b500aef2070e8ed0172fa"}, - {file = "fastobo-0.12.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:086dbcaf41a4b228993b690a3bcec0c8bb620efdc631e306d53b4a55cf6a6679"}, - {file = "fastobo-0.12.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:c3636206ab777ce97e8878fcb6ebaa4e60cbe218d4567df1c1eb5a682954ec31"}, - {file = "fastobo-0.12.2-cp37-cp37m-win_amd64.whl", hash = "sha256:d1acc15616fd0438719ad4b8769bdbee1a2ba91e2c1bb7f080054e9500143fa1"}, - {file = "fastobo-0.12.2-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:cb2db9b539823e952f168d10cdb9b093b29f82e449223d62d4154bd065ee9b16"}, - {file = "fastobo-0.12.2-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:e30610e6e0f2ef6f418646ee747966a27f0afd9882baf5e4558a60fda5ed0fc1"}, - {file = "fastobo-0.12.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e6480942a881bbdfd32ac7f13b089f8ef25a1b3c0cf68a4ee7ce6b444058b67c"}, - {file = "fastobo-0.12.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8bdde62bb944afc1e4101007557c259727303f55325b8006a5b2afae7be0187b"}, - {file = "fastobo-0.12.2-cp38-cp38-win_amd64.whl", hash = "sha256:bcd279982a5cca8220c8ebe90605efb5f23d035348dc95d285a3b4d3ebc434ea"}, - {file = "fastobo-0.12.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:e30fad077fa429fd433cb5a8ddcb86175e9f6a99c33aba9dc9d2ee37d685a560"}, - {file = "fastobo-0.12.2-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:bf8e369084876a3474600eebcc236c8d960287853229112dce1fde859cdafe57"}, - {file = "fastobo-0.12.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3b9fb88a03e810992a810c2c6ae47be7d868e1e8c1d36e8825db62407d592972"}, - {file = "fastobo-0.12.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ec03ece8b5cdf57d23c93810c1f1dc33d164da8356050a670b228c0a9f898ec5"}, - {file = "fastobo-0.12.2-cp39-cp39-win_amd64.whl", hash = "sha256:ff4f856778955896a245540ae6a1e9b3ccb08ed6ef583533cb851129f7bb55ea"}, - {file = "fastobo-0.12.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl", hash = "sha256:88b322969ec67a52675dbf1997b873b6323a35f6e099b2bd2855d6bca27728b7"}, - {file = "fastobo-0.12.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:15f691ece3f6e682c158210550bcfd97d0e71ebc4e0faf0e471979116bde477e"}, - {file = "fastobo-0.12.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:4f4c3644e354888e75c854a611d13587d04fa98822f6ce1e0017abd66b5b39e7"}, - {file = "fastobo-0.12.2-pp37-pypy37_pp73-win_amd64.whl", hash = "sha256:4dd2180030c4b70d274dccc102560df42d75687d0dffe25306e2dbb08d22ce4c"}, - {file = "fastobo-0.12.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:0d5d78976e6e18f34032ed0568c3f7a0f9191d885ba4eb44bc0e5292b398b7c3"}, - {file = "fastobo-0.12.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0a384e617f3546ad3f217baf1db5397f558cfba6005e516e8f265597ba21c494"}, - {file = "fastobo-0.12.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fb18f1fcc5b5aeae12a21d1ec1b9a86243ade00bac449bfaa28b47337d2ab67d"}, - {file = "fastobo-0.12.2-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:166082330f13fa8b6981ba4df095e6c73582d380979b5f27dd9a28b3364e5aea"}, - {file = "fastobo-0.12.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:581f3c2c6a1236c62d357fd999f3abd09673cefd828ec9ca366ec40e5f25cbe7"}, - {file = "fastobo-0.12.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:82adc0a180969674f762cf03eeb39e2d440e75869715f77581e66c3792ca3acb"}, - {file = "fastobo-0.12.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:63f6da6699b3ba73d9fc92362e55d1a02abdf94bc83fc30b8ddac816f8facbec"}, - {file = "fastobo-0.12.2-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:e32b5daac09dc28d7383dbbed64a0c33e2ad6704c37dc068dbd07abdb4c4d621"}, - {file = "fastobo-0.12.2.tar.gz", hash = "sha256:2f2779f70ac54874329dddc74cabd86fea88abe56c544c2238076c1d27fe045e"}, + {file = "fastobo-0.12.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:79fe4f5ba1ec1a2bc1ca0d65834cfc622db639128ba89019328937e623c54094"}, + {file = "fastobo-0.12.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:21c347ec270d0ef6e120ba701370a8ef20953654b397d2814f62595d4d7c0062"}, + {file = "fastobo-0.12.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:42b5cc3676bfbe902632075455eb8faef2e3c2812423bb172e0c9bb905e93e04"}, + {file = "fastobo-0.12.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:922e61874e3c436c1990fb741f69b15c8395d1c760c569f2b4f024c7d315a0f4"}, + {file = "fastobo-0.12.3-cp310-cp310-win_amd64.whl", hash = "sha256:c8f73c80ae92fd7ba8e0532880b53308200563a7ce2137ed751dd3bfb5dcde88"}, + {file = "fastobo-0.12.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:7862627caf2deda767a8b5278f7da3bf6cb8173130505f7aed03c41d5b512de9"}, + {file = "fastobo-0.12.3-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:b496e003db5ae1d27de3c5078a3a00d1bcb84b436eb68461a55efd3af979bbc6"}, + {file = "fastobo-0.12.3-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:2fed9875760ea2f0d7d9a3697f83a3168c3cd46005b41096dafbae97220a9637"}, + {file = "fastobo-0.12.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:debab1d3144506a9b4c0d98261ecf7bdcadb5f420843358188b11bc9312aec90"}, + {file = "fastobo-0.12.3-cp311-cp311-win_amd64.whl", hash = "sha256:5566f9f54f836e29edbdae15d22b11982db73fedfaefcbe5cc9f10f2568179a4"}, + {file = "fastobo-0.12.3-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:a9d6502e397bcb644ada900e33ea70683006c23598758f829be7210e375f7952"}, + {file = "fastobo-0.12.3-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:673aa41d260869ba6ae07aaa716c78cb26203662e61b3e401b006d85d748cf76"}, + {file = "fastobo-0.12.3-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:68841568868408ac1b020d436ce29de50c7457031051d8d7389dc8d838cb244f"}, + {file = "fastobo-0.12.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:09714ec07d4b0211a3ada40b7b1bfcca64aa01ba24c50d39c4d367bea058f996"}, + {file = "fastobo-0.12.3-cp312-cp312-win_amd64.whl", hash = "sha256:fa6aaa4380825692c863f2cf9a0ad667973af8dd9162fd8282331464489b3f6c"}, + {file = "fastobo-0.12.3-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:fa546543209f3ce95b23c767dd4c2ae4181a81526e8ab2df4a0c079b4073ef72"}, + {file = "fastobo-0.12.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9739bb54c025679108a1ba8638f327ddddb68d7cdd666fd9009a72597a590560"}, + {file = "fastobo-0.12.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d7cce0096b09a73fef542c17899f84db1234aff7d6bc12c1b8b86e109613bfa0"}, + {file = "fastobo-0.12.3-cp37-cp37m-win_amd64.whl", hash = "sha256:64e028355b7ca9fb4d2b8f688759e04a7c48c08db55aaafdc599dca9bc4d70fe"}, + {file = "fastobo-0.12.3-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:525cf2eebb584e5e2a2fe7c9aca4172109a8bdc008cf5699d14ffbd15a136cae"}, + {file = "fastobo-0.12.3-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:727743ff6353eb5d2982568e585b7b69fed9f6e63a141ebbbbd3f5d79a4ea8bd"}, + {file = "fastobo-0.12.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5a73ba3d593d420675691e53698cdc21b4500b17036ee80bd26b5acea03192e8"}, + {file = "fastobo-0.12.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:377ecc157842a10ecc8a00c8d9ea9f380010cbb1ee123db42b7aca78d6c12cd9"}, + {file = "fastobo-0.12.3-cp38-cp38-win_amd64.whl", hash = "sha256:bd6d4c7be54900022f85403b5c65f80b2b27997e185920a5e50471bf66e7ff08"}, + {file = "fastobo-0.12.3-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:eea6e991a4e9c0f9e4c752125f72c22ed27fb8ea3c08e4610b1264c3a3100979"}, + {file = "fastobo-0.12.3-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:e1ea49a9f0b8c8a51d920cb2782c88ddb66f44e81db55ee876ccbc6a2c3a12d2"}, + {file = "fastobo-0.12.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5cdbd0c52a5d0d43035b21294579b73439889e4af08eb5739dc94a59caaa861f"}, + {file = "fastobo-0.12.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:c6acd98a335375c384e236b1e37867150b3b067f3a161c0cfe6a3dcf74aa9bd0"}, + {file = "fastobo-0.12.3-cp39-cp39-win_amd64.whl", hash = "sha256:32ce37ba36f3b5e7b6642b6c0e5b9a0a6d95f78e5e98901f45cbbc958665fe46"}, + {file = "fastobo-0.12.3-pp310-pypy310_pp73-macosx_10_9_x86_64.whl", hash = "sha256:c8fba47c98201d0c3b0c515e1ded7608a1f3015a5a0a34df8d6cbf201d58a00e"}, + {file = "fastobo-0.12.3-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4071609ee8c8e87b03b2e786c6bd6d6845eb3580410bf95ee29c445699a99530"}, + {file = "fastobo-0.12.3-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:34781dd51ad9589e6b73bf6c3854edd22a6aba4d78d9ef17fcba3448b8501abe"}, + {file = "fastobo-0.12.3-pp310-pypy310_pp73-win_amd64.whl", hash = "sha256:958da0f135270da6fcfb8181114e5f631e77bc11ad897112039764af19085183"}, + {file = "fastobo-0.12.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl", hash = "sha256:75977f4cbdfd7b371b9c4107de953c3bd1a57201cec7c877a9a64eff7817b8ce"}, + {file = "fastobo-0.12.3-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4589124050eab5517416a357b8e0c50ecbd36a7caaf3428b3b403f8147858986"}, + {file = "fastobo-0.12.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:4c3bdbc447398a21b5ea35195bf1541f8634d86680ed763b71aa99928859bc2e"}, + {file = "fastobo-0.12.3-pp37-pypy37_pp73-win_amd64.whl", hash = "sha256:29f5180c37428af74ff80f08a4889d13fb716a6ee858debd00ac805f7c4f792b"}, + {file = "fastobo-0.12.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:9e6d701d9f69a94222c621c86ef47fa7d2cebed0a0f455a2c9144a0a8227d4ea"}, + {file = "fastobo-0.12.3-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d21581d8a22b0acf2db2b987e76c19be3b9e5a714e290690e2858b533bd882a5"}, + {file = "fastobo-0.12.3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:3b676acbf95579a72b1fae985442a583a15f2cc358efd061ab304a1f6e14269a"}, + {file = "fastobo-0.12.3-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:3f245df99769d08c007aa2630b9ca0c2aca628371512f48aaf61953f67625b05"}, + {file = "fastobo-0.12.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:dc566c24d891ab21eb985fbc73d1b5ef3bfa3f096473060cfddbab8b00669756"}, + {file = "fastobo-0.12.3-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:75205475ce0d6cedd5074107c3719b2c8df4e14cc5d481b1a28a5639418705cd"}, + {file = "fastobo-0.12.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e180e7dcf53e6fc774230d8a53212c7f710b2265ef2b3b07fe4fc75226bae17c"}, + {file = "fastobo-0.12.3-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:5e6f20a884c9409e9968e77ee74d407564814f2360dfc35440de268d753ad85e"}, + {file = "fastobo-0.12.3.tar.gz", hash = "sha256:f375932a24b078706797eb9296740f2d2e6987a34309bda7c9f235aba1d74217"}, ] [[package]] @@ -2240,13 +2249,13 @@ jupyter-server = ">=1.1.2" [[package]] name = "jupyter-server" -version = "2.11.2" +version = "2.12.0" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." optional = false python-versions = ">=3.8" files = [ - {file = "jupyter_server-2.11.2-py3-none-any.whl", hash = "sha256:0c548151b54bcb516ca466ec628f7f021545be137d01b5467877e87f6fff4374"}, - {file = "jupyter_server-2.11.2.tar.gz", hash = "sha256:0c99f9367b0f24141e527544522430176613f9249849be80504c6d2b955004bb"}, + {file = "jupyter_server-2.12.0-py3-none-any.whl", hash = "sha256:3482912efa4387bb1edc23ba60531796aff3b6d6a6e93a5810f5719e2bdb48b7"}, + {file = "jupyter_server-2.12.0.tar.gz", hash = "sha256:9fa74ed3bb931cf33f42b3d9046e2788328ec9e6dcc59d48aa3e0910a491e3e4"}, ] [package.dependencies] @@ -5033,51 +5042,37 @@ python-versions = ">=3.6" files = [ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:b42169467c42b692c19cf539c38d4602069d8c1505e97b86387fcf7afb766e1d"}, {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:07238db9cbdf8fc1e9de2489a4f68474e70dffcb32232db7c08fa61ca0c7c462"}, + {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:d92f81886165cb14d7b067ef37e142256f1c6a90a65cd156b063a43da1708cfd"}, {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl", hash = "sha256:fff3573c2db359f091e1589c3d7c5fc2f86f5bdb6f24252c2d8e539d4e45f412"}, - {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-manylinux_2_24_aarch64.whl", hash = "sha256:aa2267c6a303eb483de8d02db2871afb5c5fc15618d894300b88958f729ad74f"}, - {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:840f0c7f194986a63d2c2465ca63af8ccbbc90ab1c6001b1978f05119b5e7334"}, - {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:024cfe1fc7c7f4e1aff4a81e718109e13409767e4f871443cbff3dba3578203d"}, {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-win32.whl", hash = "sha256:c69212f63169ec1cfc9bb44723bf2917cbbd8f6191a00ef3410f5a7fe300722d"}, {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-win_amd64.whl", hash = "sha256:cabddb8d8ead485e255fe80429f833172b4cadf99274db39abc080e068cbcc31"}, {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:bef08cd86169d9eafb3ccb0a39edb11d8e25f3dae2b28f5c52fd997521133069"}, {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-macosx_13_0_arm64.whl", hash = "sha256:b16420e621d26fdfa949a8b4b47ade8810c56002f5389970db4ddda51dbff248"}, + {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux2014_aarch64.whl", hash = "sha256:b5edda50e5e9e15e54a6a8a0070302b00c518a9d32accc2346ad6c984aacd279"}, {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl", hash = "sha256:25c515e350e5b739842fc3228d662413ef28f295791af5e5110b543cf0b57d9b"}, - {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux_2_24_aarch64.whl", hash = "sha256:1707814f0d9791df063f8c19bb51b0d1278b8e9a2353abbb676c2f685dee6afe"}, - {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:46d378daaac94f454b3a0e3d8d78cafd78a026b1d71443f4966c696b48a6d899"}, - {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:09b055c05697b38ecacb7ac50bdab2240bfca1a0c4872b0fd309bb07dc9aa3a9"}, {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-win32.whl", hash = "sha256:53a300ed9cea38cf5a2a9b069058137c2ca1ce658a874b79baceb8f892f915a7"}, {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-win_amd64.whl", hash = "sha256:c2a72e9109ea74e511e29032f3b670835f8a59bbdc9ce692c5b4ed91ccf1eedb"}, {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:ebc06178e8821efc9692ea7544aa5644217358490145629914d8020042c24aa1"}, {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-macosx_13_0_arm64.whl", hash = "sha256:edaef1c1200c4b4cb914583150dcaa3bc30e592e907c01117c08b13a07255ec2"}, + {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-manylinux2014_aarch64.whl", hash = "sha256:7048c338b6c86627afb27faecf418768acb6331fc24cfa56c93e8c9780f815fa"}, {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:d176b57452ab5b7028ac47e7b3cf644bcfdc8cacfecf7e71759f7f51a59e5c92"}, - {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-manylinux_2_24_aarch64.whl", hash = "sha256:1dc67314e7e1086c9fdf2680b7b6c2be1c0d8e3a8279f2e993ca2a7545fecf62"}, - {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-musllinux_1_1_i686.whl", hash = "sha256:3213ece08ea033eb159ac52ae052a4899b56ecc124bb80020d9bbceeb50258e9"}, - {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:aab7fd643f71d7946f2ee58cc88c9b7bfc97debd71dcc93e03e2d174628e7e2d"}, - {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-win32.whl", hash = "sha256:5c365d91c88390c8d0a8545df0b5857172824b1c604e867161e6b3d59a827eaa"}, - {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-win_amd64.whl", hash = "sha256:1758ce7d8e1a29d23de54a16ae867abd370f01b5a69e1a3ba75223eaa3ca1a1b"}, {file = "ruamel.yaml.clib-0.2.8-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:a5aa27bad2bb83670b71683aae140a1f52b0857a2deff56ad3f6c13a017a26ed"}, {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:c58ecd827313af6864893e7af0a3bb85fd529f862b6adbefe14643947cfe2942"}, {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-macosx_12_0_arm64.whl", hash = "sha256:f481f16baec5290e45aebdc2a5168ebc6d35189ae6fea7a58787613a25f6e875"}, - {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_24_aarch64.whl", hash = "sha256:77159f5d5b5c14f7c34073862a6b7d34944075d9f93e681638f6d753606c6ce6"}, + {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:3fcc54cb0c8b811ff66082de1680b4b14cf8a81dce0d4fbf665c2265a81e07a1"}, {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:7f67a1ee819dc4562d444bbafb135832b0b909f81cc90f7aa00260968c9ca1b3"}, - {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:4ecbf9c3e19f9562c7fdd462e8d18dd902a47ca046a2e64dba80699f0b6c09b7"}, - {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:87ea5ff66d8064301a154b3933ae406b0863402a799b16e4a1d24d9fbbcbe0d3"}, {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-win32.whl", hash = "sha256:75e1ed13e1f9de23c5607fe6bd1aeaae21e523b32d83bb33918245361e9cc51b"}, {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-win_amd64.whl", hash = "sha256:3f215c5daf6a9d7bbed4a0a4f760f3113b10e82ff4c5c44bec20a68c8014f675"}, {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:1b617618914cb00bf5c34d4357c37aa15183fa229b24767259657746c9077615"}, {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-macosx_12_0_arm64.whl", hash = "sha256:a6a9ffd280b71ad062eae53ac1659ad86a17f59a0fdc7699fd9be40525153337"}, - {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-manylinux_2_24_aarch64.whl", hash = "sha256:305889baa4043a09e5b76f8e2a51d4ffba44259f6b4c72dec8ca56207d9c6fe1"}, + {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:665f58bfd29b167039f714c6998178d27ccd83984084c286110ef26b230f259f"}, {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:700e4ebb569e59e16a976857c8798aee258dceac7c7d6b50cab63e080058df91"}, - {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:e2b4c44b60eadec492926a7270abb100ef9f72798e18743939bdbf037aab8c28"}, - {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:e79e5db08739731b0ce4850bed599235d601701d5694c36570a99a0c5ca41a9d"}, {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-win32.whl", hash = "sha256:955eae71ac26c1ab35924203fda6220f84dce57d6d7884f189743e2abe3a9fbe"}, {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-win_amd64.whl", hash = "sha256:56f4252222c067b4ce51ae12cbac231bce32aee1d33fbfc9d17e5b8d6966c312"}, {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:03d1162b6d1df1caa3a4bd27aa51ce17c9afc2046c31b0ad60a0a96ec22f8001"}, {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:bba64af9fa9cebe325a62fa398760f5c7206b215201b0ec825005f1b18b9bccf"}, - {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_24_aarch64.whl", hash = "sha256:a1a45e0bb052edf6a1d3a93baef85319733a888363938e1fc9924cb00c8df24c"}, + {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:9eb5dee2772b0f704ca2e45b1713e4e5198c18f515b52743576d196348f374d3"}, {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:da09ad1c359a728e112d60116f626cc9f29730ff3e0e7db72b9a2dbc2e4beed5"}, - {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:184565012b60405d93838167f425713180b949e9d8dd0bbc7b49f074407c5a8b"}, - {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:a75879bacf2c987c003368cf14bed0ffe99e8e85acfa6c0bfffc21a090f16880"}, {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-win32.whl", hash = "sha256:84b554931e932c46f94ab306913ad7e11bba988104c5cff26d90d03f68258cd5"}, {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-win_amd64.whl", hash = "sha256:25ac8c08322002b06fa1d49d1646181f0b2c72f5cbc15a85e80b4c30a544bb15"}, {file = "ruamel.yaml.clib-0.2.8.tar.gz", hash = "sha256:beb2e0404003de9a4cab9753a8805a8fe9320ee6673136ed7f04255fe60bb512"}, @@ -5798,24 +5793,23 @@ tui = ["trogon"] [[package]] name = "sssom" -version = "0.3.41" +version = "0.4.0" description = "Operations on SSSOM mapping tables" optional = false python-versions = ">=3.8,<4.0" files = [ - {file = "sssom-0.3.41-py3-none-any.whl", hash = "sha256:04ce1935b3492019b16b7b748c49af366f84bbd3c059982af992d049f46098e7"}, - {file = "sssom-0.3.41.tar.gz", hash = "sha256:1d09fa9f88153963372811af829ebc1e5aefff935a4e6e12bcb65c94181aa730"}, + {file = "sssom-0.4.0-py3-none-any.whl", hash = "sha256:5510f58b8a82528afe7d66df9f2bded1415bb95e491cb93f92925badbec62774"}, + {file = "sssom-0.4.0.tar.gz", hash = "sha256:263fa80456b74068dbd64126395875f6535c6b6f2311e4811c5dbac786d77ce1"}, ] [package.dependencies] click = ">=8.1.6" -curies = ">=0.5.7" +curies = ">=0.7.3" deprecation = ">=2.1.0,<3.0.0" -importlib-metadata = ">=6.8.0" linkml-runtime = ">=1.5.5" -networkx = ">=3.1" -pandas = ">=2.0.3" -pansql = ">=0.0.1" +networkx = {version = ">=3.1", extras = ["networkx"]} +pandas = ">1.0.3" +pansql = {version = ">=0.0.1", extras = ["pansql"]} pyyaml = ">=6.0.1,<7.0.0" rdflib = ">=6.0.0" scipy = {version = "*", extras = ["scipy"]} @@ -6369,101 +6363,101 @@ email = ["email-validator"] [[package]] name = "yarl" -version = "1.9.3" +version = "1.9.4" description = "Yet another URL library" optional = true python-versions = ">=3.7" files = [ - {file = "yarl-1.9.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:32435d134414e01d937cd9d6cc56e8413a8d4741dea36af5840c7750f04d16ab"}, - {file = "yarl-1.9.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9a5211de242754b5e612557bca701f39f8b1a9408dff73c6db623f22d20f470e"}, - {file = "yarl-1.9.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:525cd69eff44833b01f8ef39aa33a9cc53a99ff7f9d76a6ef6a9fb758f54d0ff"}, - {file = "yarl-1.9.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fc94441bcf9cb8c59f51f23193316afefbf3ff858460cb47b5758bf66a14d130"}, - {file = "yarl-1.9.3-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:e36021db54b8a0475805acc1d6c4bca5d9f52c3825ad29ae2d398a9d530ddb88"}, - {file = "yarl-1.9.3-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:e0f17d1df951336a02afc8270c03c0c6e60d1f9996fcbd43a4ce6be81de0bd9d"}, - {file = "yarl-1.9.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:c5f3faeb8100a43adf3e7925d556801d14b5816a0ac9e75e22948e787feec642"}, - {file = "yarl-1.9.3-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:aed37db837ecb5962469fad448aaae0f0ee94ffce2062cf2eb9aed13328b5196"}, - {file = "yarl-1.9.3-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:721ee3fc292f0d069a04016ef2c3a25595d48c5b8ddc6029be46f6158d129c92"}, - {file = "yarl-1.9.3-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:b8bc5b87a65a4e64bc83385c05145ea901b613d0d3a434d434b55511b6ab0067"}, - {file = "yarl-1.9.3-cp310-cp310-musllinux_1_1_ppc64le.whl", hash = "sha256:dd952b9c64f3b21aedd09b8fe958e4931864dba69926d8a90c90d36ac4e28c9a"}, - {file = "yarl-1.9.3-cp310-cp310-musllinux_1_1_s390x.whl", hash = "sha256:c405d482c320a88ab53dcbd98d6d6f32ada074f2d965d6e9bf2d823158fa97de"}, - {file = "yarl-1.9.3-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:9df9a0d4c5624790a0dea2e02e3b1b3c69aed14bcb8650e19606d9df3719e87d"}, - {file = "yarl-1.9.3-cp310-cp310-win32.whl", hash = "sha256:d34c4f80956227f2686ddea5b3585e109c2733e2d4ef12eb1b8b4e84f09a2ab6"}, - {file = "yarl-1.9.3-cp310-cp310-win_amd64.whl", hash = "sha256:cf7a4e8de7f1092829caef66fd90eaf3710bc5efd322a816d5677b7664893c93"}, - {file = "yarl-1.9.3-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:d61a0ca95503867d4d627517bcfdc28a8468c3f1b0b06c626f30dd759d3999fd"}, - {file = "yarl-1.9.3-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:73cc83f918b69110813a7d95024266072d987b903a623ecae673d1e71579d566"}, - {file = "yarl-1.9.3-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:d81657b23e0edb84b37167e98aefb04ae16cbc5352770057893bd222cdc6e45f"}, - {file = "yarl-1.9.3-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:26a1a8443091c7fbc17b84a0d9f38de34b8423b459fb853e6c8cdfab0eacf613"}, - {file = "yarl-1.9.3-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:fe34befb8c765b8ce562f0200afda3578f8abb159c76de3ab354c80b72244c41"}, - {file = "yarl-1.9.3-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:2c757f64afe53a422e45e3e399e1e3cf82b7a2f244796ce80d8ca53e16a49b9f"}, - {file = "yarl-1.9.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:72a57b41a0920b9a220125081c1e191b88a4cdec13bf9d0649e382a822705c65"}, - {file = "yarl-1.9.3-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:632c7aeb99df718765adf58eacb9acb9cbc555e075da849c1378ef4d18bf536a"}, - {file = "yarl-1.9.3-cp311-cp311-musllinux_1_1_aarch64.whl", hash = "sha256:b0b8c06afcf2bac5a50b37f64efbde978b7f9dc88842ce9729c020dc71fae4ce"}, - {file = "yarl-1.9.3-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:1d93461e2cf76c4796355494f15ffcb50a3c198cc2d601ad8d6a96219a10c363"}, - {file = "yarl-1.9.3-cp311-cp311-musllinux_1_1_ppc64le.whl", hash = "sha256:4003f380dac50328c85e85416aca6985536812c082387255c35292cb4b41707e"}, - {file = "yarl-1.9.3-cp311-cp311-musllinux_1_1_s390x.whl", hash = "sha256:4d6d74a97e898c1c2df80339aa423234ad9ea2052f66366cef1e80448798c13d"}, - {file = "yarl-1.9.3-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:b61e64b06c3640feab73fa4ff9cb64bd8182de52e5dc13038e01cfe674ebc321"}, - {file = "yarl-1.9.3-cp311-cp311-win32.whl", hash = "sha256:29beac86f33d6c7ab1d79bd0213aa7aed2d2f555386856bb3056d5fdd9dab279"}, - {file = "yarl-1.9.3-cp311-cp311-win_amd64.whl", hash = "sha256:f7271d6bd8838c49ba8ae647fc06469137e1c161a7ef97d778b72904d9b68696"}, - {file = "yarl-1.9.3-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:dd318e6b75ca80bff0b22b302f83a8ee41c62b8ac662ddb49f67ec97e799885d"}, - {file = "yarl-1.9.3-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:c4b1efb11a8acd13246ffb0bee888dd0e8eb057f8bf30112e3e21e421eb82d4a"}, - {file = "yarl-1.9.3-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:c6f034386e5550b5dc8ded90b5e2ff7db21f0f5c7de37b6efc5dac046eb19c10"}, - {file = "yarl-1.9.3-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:cd49a908cb6d387fc26acee8b7d9fcc9bbf8e1aca890c0b2fdfd706057546080"}, - {file = "yarl-1.9.3-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:aa4643635f26052401750bd54db911b6342eb1a9ac3e74f0f8b58a25d61dfe41"}, - {file = "yarl-1.9.3-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:e741bd48e6a417bdfbae02e088f60018286d6c141639359fb8df017a3b69415a"}, - {file = "yarl-1.9.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7c86d0d0919952d05df880a1889a4f0aeb6868e98961c090e335671dea5c0361"}, - {file = "yarl-1.9.3-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:3d5434b34100b504aabae75f0622ebb85defffe7b64ad8f52b8b30ec6ef6e4b9"}, - {file = "yarl-1.9.3-cp312-cp312-musllinux_1_1_aarch64.whl", hash = "sha256:79e1df60f7c2b148722fb6cafebffe1acd95fd8b5fd77795f56247edaf326752"}, - {file = "yarl-1.9.3-cp312-cp312-musllinux_1_1_i686.whl", hash = "sha256:44e91a669c43f03964f672c5a234ae0d7a4d49c9b85d1baa93dec28afa28ffbd"}, - {file = "yarl-1.9.3-cp312-cp312-musllinux_1_1_ppc64le.whl", hash = "sha256:3cfa4dbe17b2e6fca1414e9c3bcc216f6930cb18ea7646e7d0d52792ac196808"}, - {file = "yarl-1.9.3-cp312-cp312-musllinux_1_1_s390x.whl", hash = "sha256:88d2c3cc4b2f46d1ba73d81c51ec0e486f59cc51165ea4f789677f91a303a9a7"}, - {file = "yarl-1.9.3-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:cccdc02e46d2bd7cb5f38f8cc3d9db0d24951abd082b2f242c9e9f59c0ab2af3"}, - {file = "yarl-1.9.3-cp312-cp312-win32.whl", hash = "sha256:96758e56dceb8a70f8a5cff1e452daaeff07d1cc9f11e9b0c951330f0a2396a7"}, - {file = "yarl-1.9.3-cp312-cp312-win_amd64.whl", hash = "sha256:c4472fe53ebf541113e533971bd8c32728debc4c6d8cc177f2bff31d011ec17e"}, - {file = "yarl-1.9.3-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:126638ab961633f0940a06e1c9d59919003ef212a15869708dcb7305f91a6732"}, - {file = "yarl-1.9.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c99ddaddb2fbe04953b84d1651149a0d85214780e4d0ee824e610ab549d98d92"}, - {file = "yarl-1.9.3-cp37-cp37m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:8dab30b21bd6fb17c3f4684868c7e6a9e8468078db00f599fb1c14e324b10fca"}, - {file = "yarl-1.9.3-cp37-cp37m-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:828235a2a169160ee73a2fcfb8a000709edf09d7511fccf203465c3d5acc59e4"}, - {file = "yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fc391e3941045fd0987c77484b2799adffd08e4b6735c4ee5f054366a2e1551d"}, - {file = "yarl-1.9.3-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:51382c72dd5377861b573bd55dcf680df54cea84147c8648b15ac507fbef984d"}, - {file = "yarl-1.9.3-cp37-cp37m-musllinux_1_1_aarch64.whl", hash = "sha256:28a108cb92ce6cf867690a962372996ca332d8cda0210c5ad487fe996e76b8bb"}, - {file = "yarl-1.9.3-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:8f18a7832ff85dfcd77871fe677b169b1bc60c021978c90c3bb14f727596e0ae"}, - {file = "yarl-1.9.3-cp37-cp37m-musllinux_1_1_ppc64le.whl", hash = "sha256:7eaf13af79950142ab2bbb8362f8d8d935be9aaf8df1df89c86c3231e4ff238a"}, - {file = "yarl-1.9.3-cp37-cp37m-musllinux_1_1_s390x.whl", hash = "sha256:66a6dbf6ca7d2db03cc61cafe1ee6be838ce0fbc97781881a22a58a7c5efef42"}, - {file = "yarl-1.9.3-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:1a0a4f3aaa18580038cfa52a7183c8ffbbe7d727fe581300817efc1e96d1b0e9"}, - {file = "yarl-1.9.3-cp37-cp37m-win32.whl", hash = "sha256:946db4511b2d815979d733ac6a961f47e20a29c297be0d55b6d4b77ee4b298f6"}, - {file = "yarl-1.9.3-cp37-cp37m-win_amd64.whl", hash = "sha256:2dad8166d41ebd1f76ce107cf6a31e39801aee3844a54a90af23278b072f1ccf"}, - {file = "yarl-1.9.3-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:bb72d2a94481e7dc7a0c522673db288f31849800d6ce2435317376a345728225"}, - {file = "yarl-1.9.3-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:9a172c3d5447b7da1680a1a2d6ecdf6f87a319d21d52729f45ec938a7006d5d8"}, - {file = "yarl-1.9.3-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:2dc72e891672343b99db6d497024bf8b985537ad6c393359dc5227ef653b2f17"}, - {file = "yarl-1.9.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b8d51817cf4b8d545963ec65ff06c1b92e5765aa98831678d0e2240b6e9fd281"}, - {file = "yarl-1.9.3-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:53ec65f7eee8655bebb1f6f1607760d123c3c115a324b443df4f916383482a67"}, - {file = "yarl-1.9.3-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:cfd77e8e5cafba3fb584e0f4b935a59216f352b73d4987be3af51f43a862c403"}, - {file = "yarl-1.9.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e73db54c967eb75037c178a54445c5a4e7461b5203b27c45ef656a81787c0c1b"}, - {file = "yarl-1.9.3-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:09c19e5f4404574fcfb736efecf75844ffe8610606f3fccc35a1515b8b6712c4"}, - {file = "yarl-1.9.3-cp38-cp38-musllinux_1_1_aarch64.whl", hash = "sha256:6280353940f7e5e2efaaabd686193e61351e966cc02f401761c4d87f48c89ea4"}, - {file = "yarl-1.9.3-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:c25ec06e4241e162f5d1f57c370f4078797ade95c9208bd0c60f484834f09c96"}, - {file = "yarl-1.9.3-cp38-cp38-musllinux_1_1_ppc64le.whl", hash = "sha256:7217234b10c64b52cc39a8d82550342ae2e45be34f5bff02b890b8c452eb48d7"}, - {file = "yarl-1.9.3-cp38-cp38-musllinux_1_1_s390x.whl", hash = "sha256:4ce77d289f8d40905c054b63f29851ecbfd026ef4ba5c371a158cfe6f623663e"}, - {file = "yarl-1.9.3-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:5f74b015c99a5eac5ae589de27a1201418a5d9d460e89ccb3366015c6153e60a"}, - {file = "yarl-1.9.3-cp38-cp38-win32.whl", hash = "sha256:8a2538806be846ea25e90c28786136932ec385c7ff3bc1148e45125984783dc6"}, - {file = "yarl-1.9.3-cp38-cp38-win_amd64.whl", hash = "sha256:6465d36381af057d0fab4e0f24ef0e80ba61f03fe43e6eeccbe0056e74aadc70"}, - {file = "yarl-1.9.3-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:2f3c8822bc8fb4a347a192dd6a28a25d7f0ea3262e826d7d4ef9cc99cd06d07e"}, - {file = "yarl-1.9.3-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:b7831566595fe88ba17ea80e4b61c0eb599f84c85acaa14bf04dd90319a45b90"}, - {file = "yarl-1.9.3-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:ff34cb09a332832d1cf38acd0f604c068665192c6107a439a92abfd8acf90fe2"}, - {file = "yarl-1.9.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fe8080b4f25dfc44a86bedd14bc4f9d469dfc6456e6f3c5d9077e81a5fedfba7"}, - {file = "yarl-1.9.3-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:8535e111a064f3bdd94c0ed443105934d6f005adad68dd13ce50a488a0ad1bf3"}, - {file = "yarl-1.9.3-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:0d155a092bf0ebf4a9f6f3b7a650dc5d9a5bbb585ef83a52ed36ba46f55cc39d"}, - {file = "yarl-1.9.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:778df71c8d0c8c9f1b378624b26431ca80041660d7be7c3f724b2c7a6e65d0d6"}, - {file = "yarl-1.9.3-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:b9f9cafaf031c34d95c1528c16b2fa07b710e6056b3c4e2e34e9317072da5d1a"}, - {file = "yarl-1.9.3-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:ca6b66f69e30f6e180d52f14d91ac854b8119553b524e0e28d5291a724f0f423"}, - {file = "yarl-1.9.3-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:e0e7e83f31e23c5d00ff618045ddc5e916f9e613d33c5a5823bc0b0a0feb522f"}, - {file = "yarl-1.9.3-cp39-cp39-musllinux_1_1_ppc64le.whl", hash = "sha256:af52725c7c39b0ee655befbbab5b9a1b209e01bb39128dce0db226a10014aacc"}, - {file = "yarl-1.9.3-cp39-cp39-musllinux_1_1_s390x.whl", hash = "sha256:0ab5baaea8450f4a3e241ef17e3d129b2143e38a685036b075976b9c415ea3eb"}, - {file = "yarl-1.9.3-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:6d350388ba1129bc867c6af1cd17da2b197dff0d2801036d2d7d83c2d771a682"}, - {file = "yarl-1.9.3-cp39-cp39-win32.whl", hash = "sha256:e2a16ef5fa2382af83bef4a18c1b3bcb4284c4732906aa69422cf09df9c59f1f"}, - {file = "yarl-1.9.3-cp39-cp39-win_amd64.whl", hash = "sha256:d92d897cb4b4bf915fbeb5e604c7911021a8456f0964f3b8ebbe7f9188b9eabb"}, - {file = "yarl-1.9.3-py3-none-any.whl", hash = "sha256:271d63396460b6607b588555ea27a1a02b717ca2e3f2cf53bdde4013d7790929"}, - {file = "yarl-1.9.3.tar.gz", hash = "sha256:4a14907b597ec55740f63e52d7fee0e9ee09d5b9d57a4f399a7423268e457b57"}, + {file = "yarl-1.9.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a8c1df72eb746f4136fe9a2e72b0c9dc1da1cbd23b5372f94b5820ff8ae30e0e"}, + {file = "yarl-1.9.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a3a6ed1d525bfb91b3fc9b690c5a21bb52de28c018530ad85093cc488bee2dd2"}, + {file = "yarl-1.9.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c38c9ddb6103ceae4e4498f9c08fac9b590c5c71b0370f98714768e22ac6fa66"}, + {file = "yarl-1.9.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d9e09c9d74f4566e905a0b8fa668c58109f7624db96a2171f21747abc7524234"}, + {file = "yarl-1.9.4-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:b8477c1ee4bd47c57d49621a062121c3023609f7a13b8a46953eb6c9716ca392"}, + {file = "yarl-1.9.4-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:d5ff2c858f5f6a42c2a8e751100f237c5e869cbde669a724f2062d4c4ef93551"}, + {file = "yarl-1.9.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:357495293086c5b6d34ca9616a43d329317feab7917518bc97a08f9e55648455"}, + {file = "yarl-1.9.4-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:54525ae423d7b7a8ee81ba189f131054defdb122cde31ff17477951464c1691c"}, + {file = "yarl-1.9.4-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:801e9264d19643548651b9db361ce3287176671fb0117f96b5ac0ee1c3530d53"}, + {file = "yarl-1.9.4-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:e516dc8baf7b380e6c1c26792610230f37147bb754d6426462ab115a02944385"}, + {file = "yarl-1.9.4-cp310-cp310-musllinux_1_1_ppc64le.whl", hash = "sha256:7d5aaac37d19b2904bb9dfe12cdb08c8443e7ba7d2852894ad448d4b8f442863"}, + {file = "yarl-1.9.4-cp310-cp310-musllinux_1_1_s390x.whl", hash = "sha256:54beabb809ffcacbd9d28ac57b0db46e42a6e341a030293fb3185c409e626b8b"}, + {file = "yarl-1.9.4-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:bac8d525a8dbc2a1507ec731d2867025d11ceadcb4dd421423a5d42c56818541"}, + {file = "yarl-1.9.4-cp310-cp310-win32.whl", hash = "sha256:7855426dfbddac81896b6e533ebefc0af2f132d4a47340cee6d22cac7190022d"}, + {file = "yarl-1.9.4-cp310-cp310-win_amd64.whl", hash = "sha256:848cd2a1df56ddbffeb375535fb62c9d1645dde33ca4d51341378b3f5954429b"}, + {file = "yarl-1.9.4-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:35a2b9396879ce32754bd457d31a51ff0a9d426fd9e0e3c33394bf4b9036b099"}, + {file = "yarl-1.9.4-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:4c7d56b293cc071e82532f70adcbd8b61909eec973ae9d2d1f9b233f3d943f2c"}, + {file = "yarl-1.9.4-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:d8a1c6c0be645c745a081c192e747c5de06e944a0d21245f4cf7c05e457c36e0"}, + {file = "yarl-1.9.4-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4b3c1ffe10069f655ea2d731808e76e0f452fc6c749bea04781daf18e6039525"}, + {file = "yarl-1.9.4-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:549d19c84c55d11687ddbd47eeb348a89df9cb30e1993f1b128f4685cd0ebbf8"}, + {file = "yarl-1.9.4-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:a7409f968456111140c1c95301cadf071bd30a81cbd7ab829169fb9e3d72eae9"}, + {file = "yarl-1.9.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e23a6d84d9d1738dbc6e38167776107e63307dfc8ad108e580548d1f2c587f42"}, + {file = "yarl-1.9.4-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:d8b889777de69897406c9fb0b76cdf2fd0f31267861ae7501d93003d55f54fbe"}, + {file = "yarl-1.9.4-cp311-cp311-musllinux_1_1_aarch64.whl", hash = "sha256:03caa9507d3d3c83bca08650678e25364e1843b484f19986a527630ca376ecce"}, + {file = "yarl-1.9.4-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:4e9035df8d0880b2f1c7f5031f33f69e071dfe72ee9310cfc76f7b605958ceb9"}, + {file = "yarl-1.9.4-cp311-cp311-musllinux_1_1_ppc64le.whl", hash = "sha256:c0ec0ed476f77db9fb29bca17f0a8fcc7bc97ad4c6c1d8959c507decb22e8572"}, + {file = "yarl-1.9.4-cp311-cp311-musllinux_1_1_s390x.whl", hash = "sha256:ee04010f26d5102399bd17f8df8bc38dc7ccd7701dc77f4a68c5b8d733406958"}, + {file = "yarl-1.9.4-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:49a180c2e0743d5d6e0b4d1a9e5f633c62eca3f8a86ba5dd3c471060e352ca98"}, + {file = "yarl-1.9.4-cp311-cp311-win32.whl", hash = "sha256:81eb57278deb6098a5b62e88ad8281b2ba09f2f1147c4767522353eaa6260b31"}, + {file = "yarl-1.9.4-cp311-cp311-win_amd64.whl", hash = "sha256:d1d2532b340b692880261c15aee4dc94dd22ca5d61b9db9a8a361953d36410b1"}, + {file = "yarl-1.9.4-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:0d2454f0aef65ea81037759be5ca9947539667eecebca092733b2eb43c965a81"}, + {file = "yarl-1.9.4-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:44d8ffbb9c06e5a7f529f38f53eda23e50d1ed33c6c869e01481d3fafa6b8142"}, + {file = "yarl-1.9.4-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:aaaea1e536f98754a6e5c56091baa1b6ce2f2700cc4a00b0d49eca8dea471074"}, + {file = "yarl-1.9.4-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3777ce5536d17989c91696db1d459574e9a9bd37660ea7ee4d3344579bb6f129"}, + {file = "yarl-1.9.4-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:9fc5fc1eeb029757349ad26bbc5880557389a03fa6ada41703db5e068881e5f2"}, + {file = "yarl-1.9.4-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:ea65804b5dc88dacd4a40279af0cdadcfe74b3e5b4c897aa0d81cf86927fee78"}, + {file = "yarl-1.9.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:aa102d6d280a5455ad6a0f9e6d769989638718e938a6a0a2ff3f4a7ff8c62cc4"}, + {file = "yarl-1.9.4-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:09efe4615ada057ba2d30df871d2f668af661e971dfeedf0c159927d48bbeff0"}, + {file = "yarl-1.9.4-cp312-cp312-musllinux_1_1_aarch64.whl", hash = "sha256:008d3e808d03ef28542372d01057fd09168419cdc8f848efe2804f894ae03e51"}, + {file = "yarl-1.9.4-cp312-cp312-musllinux_1_1_i686.whl", hash = "sha256:6f5cb257bc2ec58f437da2b37a8cd48f666db96d47b8a3115c29f316313654ff"}, + {file = "yarl-1.9.4-cp312-cp312-musllinux_1_1_ppc64le.whl", hash = "sha256:992f18e0ea248ee03b5a6e8b3b4738850ae7dbb172cc41c966462801cbf62cf7"}, + {file = "yarl-1.9.4-cp312-cp312-musllinux_1_1_s390x.whl", hash = "sha256:0e9d124c191d5b881060a9e5060627694c3bdd1fe24c5eecc8d5d7d0eb6faabc"}, + {file = "yarl-1.9.4-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:3986b6f41ad22988e53d5778f91855dc0399b043fc8946d4f2e68af22ee9ff10"}, + {file = "yarl-1.9.4-cp312-cp312-win32.whl", hash = "sha256:4b21516d181cd77ebd06ce160ef8cc2a5e9ad35fb1c5930882baff5ac865eee7"}, + {file = "yarl-1.9.4-cp312-cp312-win_amd64.whl", hash = "sha256:a9bd00dc3bc395a662900f33f74feb3e757429e545d831eef5bb280252631984"}, + {file = "yarl-1.9.4-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:63b20738b5aac74e239622d2fe30df4fca4942a86e31bf47a81a0e94c14df94f"}, + {file = "yarl-1.9.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d7d7f7de27b8944f1fee2c26a88b4dabc2409d2fea7a9ed3df79b67277644e17"}, + {file = "yarl-1.9.4-cp37-cp37m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:c74018551e31269d56fab81a728f683667e7c28c04e807ba08f8c9e3bba32f14"}, + {file = "yarl-1.9.4-cp37-cp37m-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:ca06675212f94e7a610e85ca36948bb8fc023e458dd6c63ef71abfd482481aa5"}, + {file = "yarl-1.9.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5aef935237d60a51a62b86249839b51345f47564208c6ee615ed2a40878dccdd"}, + {file = "yarl-1.9.4-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2b134fd795e2322b7684155b7855cc99409d10b2e408056db2b93b51a52accc7"}, + {file = "yarl-1.9.4-cp37-cp37m-musllinux_1_1_aarch64.whl", hash = "sha256:d25039a474c4c72a5ad4b52495056f843a7ff07b632c1b92ea9043a3d9950f6e"}, + {file = "yarl-1.9.4-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:f7d6b36dd2e029b6bcb8a13cf19664c7b8e19ab3a58e0fefbb5b8461447ed5ec"}, + {file = "yarl-1.9.4-cp37-cp37m-musllinux_1_1_ppc64le.whl", hash = "sha256:957b4774373cf6f709359e5c8c4a0af9f6d7875db657adb0feaf8d6cb3c3964c"}, + {file = "yarl-1.9.4-cp37-cp37m-musllinux_1_1_s390x.whl", hash = "sha256:d7eeb6d22331e2fd42fce928a81c697c9ee2d51400bd1a28803965883e13cead"}, + {file = "yarl-1.9.4-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:6a962e04b8f91f8c4e5917e518d17958e3bdee71fd1d8b88cdce74dd0ebbf434"}, + {file = "yarl-1.9.4-cp37-cp37m-win32.whl", hash = "sha256:f3bc6af6e2b8f92eced34ef6a96ffb248e863af20ef4fde9448cc8c9b858b749"}, + {file = "yarl-1.9.4-cp37-cp37m-win_amd64.whl", hash = "sha256:ad4d7a90a92e528aadf4965d685c17dacff3df282db1121136c382dc0b6014d2"}, + {file = "yarl-1.9.4-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:ec61d826d80fc293ed46c9dd26995921e3a82146feacd952ef0757236fc137be"}, + {file = "yarl-1.9.4-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:8be9e837ea9113676e5754b43b940b50cce76d9ed7d2461df1af39a8ee674d9f"}, + {file = "yarl-1.9.4-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:bef596fdaa8f26e3d66af846bbe77057237cb6e8efff8cd7cc8dff9a62278bbf"}, + {file = "yarl-1.9.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:2d47552b6e52c3319fede1b60b3de120fe83bde9b7bddad11a69fb0af7db32f1"}, + {file = "yarl-1.9.4-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:84fc30f71689d7fc9168b92788abc977dc8cefa806909565fc2951d02f6b7d57"}, + {file = "yarl-1.9.4-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:4aa9741085f635934f3a2583e16fcf62ba835719a8b2b28fb2917bb0537c1dfa"}, + {file = "yarl-1.9.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:206a55215e6d05dbc6c98ce598a59e6fbd0c493e2de4ea6cc2f4934d5a18d130"}, + {file = "yarl-1.9.4-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:07574b007ee20e5c375a8fe4a0789fad26db905f9813be0f9fef5a68080de559"}, + {file = "yarl-1.9.4-cp38-cp38-musllinux_1_1_aarch64.whl", hash = "sha256:5a2e2433eb9344a163aced6a5f6c9222c0786e5a9e9cac2c89f0b28433f56e23"}, + {file = "yarl-1.9.4-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:6ad6d10ed9b67a382b45f29ea028f92d25bc0bc1daf6c5b801b90b5aa70fb9ec"}, + {file = "yarl-1.9.4-cp38-cp38-musllinux_1_1_ppc64le.whl", hash = "sha256:6fe79f998a4052d79e1c30eeb7d6c1c1056ad33300f682465e1b4e9b5a188b78"}, + {file = "yarl-1.9.4-cp38-cp38-musllinux_1_1_s390x.whl", hash = "sha256:a825ec844298c791fd28ed14ed1bffc56a98d15b8c58a20e0e08c1f5f2bea1be"}, + {file = "yarl-1.9.4-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:8619d6915b3b0b34420cf9b2bb6d81ef59d984cb0fde7544e9ece32b4b3043c3"}, + {file = "yarl-1.9.4-cp38-cp38-win32.whl", hash = "sha256:686a0c2f85f83463272ddffd4deb5e591c98aac1897d65e92319f729c320eece"}, + {file = "yarl-1.9.4-cp38-cp38-win_amd64.whl", hash = "sha256:a00862fb23195b6b8322f7d781b0dc1d82cb3bcac346d1e38689370cc1cc398b"}, + {file = "yarl-1.9.4-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:604f31d97fa493083ea21bd9b92c419012531c4e17ea6da0f65cacdcf5d0bd27"}, + {file = "yarl-1.9.4-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:8a854227cf581330ffa2c4824d96e52ee621dd571078a252c25e3a3b3d94a1b1"}, + {file = "yarl-1.9.4-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:ba6f52cbc7809cd8d74604cce9c14868306ae4aa0282016b641c661f981a6e91"}, + {file = "yarl-1.9.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a6327976c7c2f4ee6816eff196e25385ccc02cb81427952414a64811037bbc8b"}, + {file = "yarl-1.9.4-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:8397a3817d7dcdd14bb266283cd1d6fc7264a48c186b986f32e86d86d35fbac5"}, + {file = "yarl-1.9.4-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:e0381b4ce23ff92f8170080c97678040fc5b08da85e9e292292aba67fdac6c34"}, + {file = "yarl-1.9.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:23d32a2594cb5d565d358a92e151315d1b2268bc10f4610d098f96b147370136"}, + {file = "yarl-1.9.4-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ddb2a5c08a4eaaba605340fdee8fc08e406c56617566d9643ad8bf6852778fc7"}, + {file = "yarl-1.9.4-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:26a1dc6285e03f3cc9e839a2da83bcbf31dcb0d004c72d0730e755b33466c30e"}, + {file = "yarl-1.9.4-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:18580f672e44ce1238b82f7fb87d727c4a131f3a9d33a5e0e82b793362bf18b4"}, + {file = "yarl-1.9.4-cp39-cp39-musllinux_1_1_ppc64le.whl", hash = "sha256:29e0f83f37610f173eb7e7b5562dd71467993495e568e708d99e9d1944f561ec"}, + {file = "yarl-1.9.4-cp39-cp39-musllinux_1_1_s390x.whl", hash = "sha256:1f23e4fe1e8794f74b6027d7cf19dc25f8b63af1483d91d595d4a07eca1fb26c"}, + {file = "yarl-1.9.4-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:db8e58b9d79200c76956cefd14d5c90af54416ff5353c5bfd7cbe58818e26ef0"}, + {file = "yarl-1.9.4-cp39-cp39-win32.whl", hash = "sha256:c7224cab95645c7ab53791022ae77a4509472613e839dab722a72abe5a684575"}, + {file = "yarl-1.9.4-cp39-cp39-win_amd64.whl", hash = "sha256:824d6c50492add5da9374875ce72db7a0733b29c2394890aef23d533106e2b15"}, + {file = "yarl-1.9.4-py3-none-any.whl", hash = "sha256:928cecb0ef9d5a7946eb6ff58417ad2fe9375762382f1bf5c55e61645f2c43ad"}, + {file = "yarl-1.9.4.tar.gz", hash = "sha256:566db86717cf8080b99b58b083b773a908ae40f06681e87e589a976faf8246bf"}, ] [package.dependencies] @@ -6494,4 +6488,4 @@ seaborn = [] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4.0.0" -content-hash = "23021dac286f286371309df5c6cdb17003bc77ff95187d25f9dbcb038801b0f9" +content-hash = "4f1411500421d4ade7a62db019610f93e9c2f0863deb246d83dfe6966360b888" diff --git a/pyproject.toml b/pyproject.toml index a82a0ac4d..7122a93f5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,7 +15,7 @@ SQLAlchemy = ">=1.4.32" linkml-runtime = ">=1.5.3" linkml-renderer = ">=0.3.0" networkx = ">=2.7.1" -sssom = "<0.4.0" +sssom = "^0.4.0" ratelimit = ">=2.2.1" appdirs = ">=1.4.4" semsql = ">=0.3.1" diff --git a/src/oaklib/interfaces/basic_ontology_interface.py b/src/oaklib/interfaces/basic_ontology_interface.py index 4e4322a1b..1f45a82e5 100644 --- a/src/oaklib/interfaces/basic_ontology_interface.py +++ b/src/oaklib/interfaces/basic_ontology_interface.py @@ -209,9 +209,7 @@ def set_metamodel_mappings(self, mappings: Union[str, Path, List[Mapping]]) -> N :param mappings: Mappings for predicates such as rdfs:subClassOf :return: """ - if isinstance(mappings, Path): - mappings = str - if isinstance(mappings, str): + if isinstance(mappings, (str, Path)): msdf = parse_sssom_table(mappings) msd = to_mapping_set_document(msdf) mappings = msd.mapping_set.mappings diff --git a/src/oaklib/utilities/lexical/lexical_indexer.py b/src/oaklib/utilities/lexical/lexical_indexer.py index f0a04d285..e3e196524 100644 --- a/src/oaklib/utilities/lexical/lexical_indexer.py +++ b/src/oaklib/utilities/lexical/lexical_indexer.py @@ -7,19 +7,20 @@ """ import logging import re +import typing as t from collections import defaultdict from pathlib import Path from typing import Collection, Dict, List, Optional, Tuple, Union +import curies +from curies import Converter from linkml_runtime.dumpers import json_dumper, yaml_dumper from linkml_runtime.loaders import json_loader, yaml_loader from linkml_runtime.utils.metamodelcore import URIorCURIE -from sssom.constants import LICENSE, MAPPING_SET_ID -from sssom.context import get_default_metadata -from sssom.sssom_document import MappingSetDocument -from sssom.typehints import Metadata -from sssom.util import MappingSetDataFrame, to_mapping_set_dataframe -from sssom_schema import Mapping, MappingSet +from sssom.constants import CURIE_MAP +from sssom.context import ensure_converter +from sssom.util import MappingSetDataFrame +from sssom_schema import Mapping from oaklib.datamodels.lexical_index import ( LexicalGrouping, @@ -244,8 +245,8 @@ def lexical_index_to_sssom( oi: BasicOntologyInterface, lexical_index: LexicalIndex, ruleset: MappingRuleCollection = None, - meta: Metadata = None, - prefix_map: dict = None, + meta: Optional[Dict[str, t.Any]] = None, + prefix_map: Union[None, Converter, t.Mapping[str, str]] = None, subjects: Collection[CURIE] = None, objects: Collection[CURIE] = None, symmetric: bool = False, @@ -310,24 +311,15 @@ def lexical_index_to_sssom( # mappings.append(create_mapping(oi, term, r1, r2)) logging.info("Done creating SSSOM mappings") - if meta is None: - meta = get_default_metadata() - if prefix_map: - meta.prefix_map.update( - {k: v for k, v in prefix_map.items() if k not in meta.prefix_map.keys()} - ) - mapping_set_id = meta.metadata[MAPPING_SET_ID] - license = meta.metadata[LICENSE] - - mset = MappingSet(mapping_set_id=mapping_set_id, mappings=mappings, license=license) - # doc = MappingSetDocument(prefix_map=oi.prefix_map(), mapping_set=mset) - doc = MappingSetDocument(prefix_map=meta.prefix_map, mapping_set=mset) - msdf = to_mapping_set_dataframe(doc) - num_mappings = len(msdf.df.index) - if ensure_strict_prefixes: - msdf.clean_prefix_map() - if len(msdf.df.index) < num_mappings: - raise ValueError("Mappings included prefixes that were not in the prefix map") + converter = curies.chain( + [ + Converter.from_prefix_map((meta or {}).pop(CURIE_MAP, {})), + ensure_converter(prefix_map, use_defaults=False), + oi.converter, + ] + ) + msdf = MappingSetDataFrame.from_mappings(mappings=mappings, metadata=meta, converter=converter) + msdf.clean_prefix_map(strict=ensure_strict_prefixes) return msdf diff --git a/src/oaklib/utilities/mapping/sssom_utils.py b/src/oaklib/utilities/mapping/sssom_utils.py index f96deb086..63199fc9f 100644 --- a/src/oaklib/utilities/mapping/sssom_utils.py +++ b/src/oaklib/utilities/mapping/sssom_utils.py @@ -2,17 +2,14 @@ from typing import Iterable, List, Optional, Tuple from linkml_runtime.utils.metamodelcore import URIorCURIE -from sssom.sssom_document import MappingSetDocument -from sssom.util import to_mapping_set_dataframe +from sssom.util import MappingSetDataFrame from sssom.writers import write_table -from sssom_schema import Mapping, MappingSet +from sssom_schema import Mapping from oaklib.io.streaming_writer import StreamingWriter from oaklib.types import CURIE from oaklib.utilities.basic_utils import get_curie_prefix -UNSPECIFIED_MAPPING_SET_ID = "https://w3id.org/sssom/license/unspecified" - def create_sssom_mapping( subject_id: CURIE, object_id: CURIE, strict=False, **kwargs @@ -74,14 +71,9 @@ def emit(self, obj: Mapping): self.mappings.append(obj) def finish(self): - mset = MappingSet( - mapping_set_id="temp", mappings=self.mappings, license=UNSPECIFIED_MAPPING_SET_ID - ) - if self.ontology_interface: - prefix_map = self.ontology_interface.prefix_map() - else: - prefix_map = {} - doc = MappingSetDocument(prefix_map=prefix_map, mapping_set=mset) - msdf = to_mapping_set_dataframe(doc) + converter = self.ontology_interface.converter if self.ontology_interface else None + # default metadata, including an auto-generated mapping set URI and + # a license, are automatically added with this function + msdf = MappingSetDataFrame.from_mappings(self.mappings, converter=converter) msdf.clean_prefix_map(strict=False) write_table(msdf, self.file) diff --git a/tests/test_utilities/test_sssom_matcher.py b/tests/test_utilities/test_sssom_matcher.py index 566b24ad6..e144640c9 100644 --- a/tests/test_utilities/test_sssom_matcher.py +++ b/tests/test_utilities/test_sssom_matcher.py @@ -1,7 +1,7 @@ import unittest from pathlib import Path -from sssom.io import get_metadata_and_prefix_map +import yaml from sssom.parsers import to_mapping_set_document from sssom.writers import write_table from sssom_schema import Mapping @@ -169,7 +169,7 @@ def test_sssom_with_rules_file(self): lexical_index = create_lexical_index(oi) add_labels_from_uris(oi) ruleset = load_mapping_rules(str(RULES)) - metadata = get_metadata_and_prefix_map(MATCHER_META_YML) + metadata = yaml.safe_load(MATCHER_META_YML.read_text()) msdf = lexical_index_to_sssom(self.oi, lexical_index, ruleset=ruleset, meta=metadata) with open(MATCHER_TEST_SSSOM_OUT, "w", encoding="utf-8") as file: write_table(msdf, file) diff --git a/tox.ini b/tox.ini index aac36e7b5..066214e7b 100644 --- a/tox.ini +++ b/tox.ini @@ -28,6 +28,12 @@ deps = gilda linkml +[testenv:lock] +skip_install = true +commands = poetry lock +deps = poetry +description = Lock dependencies with poetry + [testenv:lint] deps = black