Minor bug fixes and improvements manual testing notes (#39)

* Added get_most_specific_objects and get_most_specific_subjects methods

* Version has been updated to 0.3.3

* Added get_ancestor_enrichment_query method

* Added ancestor_enrichment method

* Added new test cases for ancestor_enrichment

* Added new data for ancestor_enrichment

* Fixed import order

* Updated test_get_ancestor_enrichment_query

* Removed unnecessary f-string

* Minor refactoring in query.py

* Added new cases for get_most_specific_objects and get_most_specific_subjects

* Added parent_enrichment and docstrings for parent_enrichment and ancestor_enrichment

* Refactored object_list to prevent duplicated terms

pandasaurus/query.py

@@ -78,7 +78,7 @@ def simple_enrichment(self) -> pd.DataFrame:
 
         """
         source_list = [term.get_iri() for term in self._term_list]
-        object_list = [term.get_iri() for term in self._term_list]
+        object_list = source_list
         query_string = get_simple_enrichment_query(source_list, object_list, self._enrichment_property_list)
         self.enriched_df = (
             pd.DataFrame(
@@ -105,7 +105,7 @@ def minimal_slim_enrichment(self, slim_list: List[str]) -> pd.DataFrame:
 
         """
         source_list = [term.get_iri() for term in self._term_list]
-        object_list = source_list + SlimManager.get_slim_members(slim_list)
+        object_list = list(set(source_list + SlimManager.get_slim_members(slim_list)))
         s_result = []
         for chunk in chunks(object_list, 90):
             s_result.extend(
@@ -139,7 +139,7 @@ def full_slim_enrichment(self, slim_list: List[str]) -> pd.DataFrame:
 
         """
         source_list = [term.get_iri() for term in self._term_list]
-        object_list = source_list + SlimManager.get_slim_members(slim_list)
+        object_list = list(set(source_list + SlimManager.get_slim_members(slim_list)))
         s_result = []
         for chunk in chunks(object_list, 90):
             s_result.extend([res for res in run_sparql_query(get_full_enrichment_query(source_list, chunk))])
@@ -171,7 +171,7 @@ def contextual_slim_enrichment(self, context: List[str]) -> pd.DataFrame:
         # TODO add a curie checking mechanism for context list
         query_string = get_contextual_enrichment_query(context)
         source_list = [term.get_iri() for term in self._term_list]
-        object_list = source_list + [res.get("term") for res in run_sparql_query(query_string)]
+        object_list = list(set(source_list + [res.get("term") for res in run_sparql_query(query_string)]))
         s_result = []
         for chunk in chunks(object_list, 90):
             s_result.extend(
@@ -378,4 +378,3 @@ def _generate_enrichment_graph(self, object_list):
         self.mirror_enrichment_for_graph_generation(object_list)
         self.graph = GraphGenerator.generate_enrichment_graph(self.graph_df)
         self.graph = GraphGenerator.apply_transitive_reduction(self.graph, self.enriched_df["p"].unique().tolist())
-        # self.graph = GraphGenerator.apply_transitive_reduction(self.graph, self.graph_df["p"].unique().tolist())ş