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I'm currently using dabble to produce structures and my configuration is based on conda install -c rbetz dabble in python 3.6.3.
However, when I try to read pdbs or maes, the problem is raised:
Inferring output format from file extension
Traceback (most recent call last):
File "/home/v-xinhenghe/miniconda3/envs/dabble/bin/dabble", line 11, in
load_entry_point('dabble==2.7.9', 'console_scripts', 'dabble')()
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/main.py", line 233, in main
builder.write()
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/builder.py", line 245, in write
final_id = self._build()
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/builder.py", line 115, in _build
self.add_molecule(self.opts.get('membrane_system'), 'membrane')
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/builder.py", line 282, in add_molecule
atomsel('all', molid=molid).beta = 1
AttributeError: 'atomsel.atomsel' object has no attribute 'beta'
It seems that from vmd import atomsel shows some error that 'atomsel.atomsel' object does not work well. It there any solution?
Thanks for your concerning and wish to get a reply.
The text was updated successfully, but these errors were encountered:
Xinheng-He
changed the title
Error in mae or pdn reading
Error in mae or pdb reading
Mar 6, 2022
Hi!
I'm currently using dabble to produce structures and my configuration is based on conda install -c rbetz dabble in python 3.6.3.
However, when I try to read pdbs or maes, the problem is raised:
Inferring output format from file extension
Traceback (most recent call last):
File "/home/v-xinhenghe/miniconda3/envs/dabble/bin/dabble", line 11, in
load_entry_point('dabble==2.7.9', 'console_scripts', 'dabble')()
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/main.py", line 233, in main
builder.write()
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/builder.py", line 245, in write
final_id = self._build()
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/builder.py", line 115, in _build
self.add_molecule(self.opts.get('membrane_system'), 'membrane')
File "/home/v-xinhenghe/miniconda3/envs/dabble/lib/python3.6/site-packages/dabble/builder.py", line 282, in add_molecule
atomsel('all', molid=molid).beta = 1
AttributeError: 'atomsel.atomsel' object has no attribute 'beta'
It seems that from vmd import atomsel shows some error that 'atomsel.atomsel' object does not work well. It there any solution?
Thanks for your concerning and wish to get a reply.
The text was updated successfully, but these errors were encountered: