Skip to content

fix: gh workflow

fix: gh workflow #661

Triggered via push May 24, 2024 16:53
Status Failure
Total duration 1m 37s
Artifacts
Matrix: build
Fit to window
Zoom out
Zoom in

Annotations

9 errors and 8 warnings
build (3.9, macos-latest)
Process completed with exit code 1.
build (3.9, macos-latest)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
build (3.9, ubuntu-latest)
The job was canceled because "_3_9_macos-latest" failed.
build (3.9, ubuntu-latest)
Process completed with exit code 1.
build (3.10, ubuntu-latest)
The job was canceled because "_3_9_macos-latest" failed.
build (3.10, ubuntu-latest)
The operation was canceled.
build (3.10, macos-latest)
The job was canceled because "_3_9_macos-latest" failed.
build (3.10, macos-latest)
Process completed with exit code 1.
build (3.10, macos-latest)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
build (3.9, macos-latest)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
build (3.9, macos-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build (3.9, macos-latest)
Unexpected input(s) 'pythn-version', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
build (3.9, macos-latest)
PackagesNotFoundError: The following packages are not available from current channels: - samtools[version='>=1.11'] - pysam==0.19.1 - prodigal==2.6.3 - portcullis==1.2.4 - htslib[version='>=1.11'] - diamond==2.0.11 Current channels: - https://conda.anaconda.org/bioconda/osx-arm64 - https://conda.anaconda.org/conda-forge/osx-arm64 - https://repo.anaconda.com/pkgs/main/osx-arm64 - https://repo.anaconda.com/pkgs/r/osx-arm64 - https://conda.anaconda.org/anaconda/osx-arm64 To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Note: 'use_only_tar_bz2' is enabled. This might be omitting some packages from the index. Set this option to 'false' and retry.
build (3.9, ubuntu-latest)
Unexpected input(s) 'pythn-version', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
build (3.10, ubuntu-latest)
Unexpected input(s) 'pythn-version', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
build (3.10, macos-latest)
Unexpected input(s) 'pythn-version', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'conda-solver', 'architecture', 'clean-patched-environment-file', 'run-post']
build (3.10, macos-latest)
PackagesNotFoundError: The following packages are not available from current channels: - samtools[version='>=1.11'] - pysam==0.19.1 - prodigal==2.6.3 - portcullis==1.2.4 - htslib[version='>=1.11'] - diamond==2.0.11 Current channels: - https://conda.anaconda.org/bioconda/osx-arm64 - https://conda.anaconda.org/conda-forge/osx-arm64 - https://repo.anaconda.com/pkgs/main/osx-arm64 - https://repo.anaconda.com/pkgs/r/osx-arm64 - https://conda.anaconda.org/anaconda/osx-arm64 To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Note: 'use_only_tar_bz2' is enabled. This might be omitting some packages from the index. Set this option to 'false' and retry.