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update README
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rhiju committed Feb 21, 2024
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Scripts and example files

- Data preparation for Kaggle [Ribonanza competition 2023](https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/overview), launched on Sep. 7, 2023.
- **Keep confidential until December 2023**. This repo will be publicly released after competition end in December 2023
- Initial repo involves preparation of train_data, test_data (public leaderboard), and small fraction of private leaderboard available at competition start.
- When Positives240, Positives390, and OneMil-Round2 ('future data') are collected during competition, make sure to **update this repo** to document data prep.
- When Positives240 and OneMil-Round2 ('future data') were collected during competition, the Google Drive linked below was updated to create new solution files.

Initial repo prepared on Sep. 10, 2023.
Release date: Feb. 20, 2024
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The complete **kaggle2023** folder is on Rhiju Das's laptop, which is synced to [this Google Drive (made public at competition end)](https://drive.google.com/open?id=15dTkZoVHioacjgcGfwsYBF7xyt4qYOVc&usp=drive_fs)
as well as on Stanford's Oak long-term storage (`/oak/stanford/groups/rhiju/sherlock/scratch/rhiju/Experiments/Eterna_RYOP_Pilot2022_experiments/DataAnalysis/kaggle2023.tgz`)

Notes on 'releases' of data & solution sets are available in this [RibonanzaKaggle2023_VersionNotes Sheet](https://docs.google.com/spreadsheets/d/1lxkhN-nmqxMru2CKYi9pzZZ7uT5IT6k47zTGvdKkrvo/edit?usp=drive_link) which is in the Google Drive above.

## What's in here

* `matlab` - scripts that need to be added to your MATLAB path to run the scripts
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