.travis.yml

os:
  - linux
dist: xenial
sudo: required

language: python
python:
  - "3.6"

services:
  - docker

before_install:
  - docker-compose up --build -d

# command to install dependencies
install:
  - pip3 install -r requirements.txt
  # - python setup.py install
  - pip3 install pipenv
  - pipenv install
  - pipenv install -e .

before_script:
  - sudo apt-get update
  - wget https://repo.continuum.io/miniconda/Miniconda3-4.5.1-Linux-x86_64.sh -O miniconda.sh
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  - conda config --get channels
  - conda config --add channels conda-forge
  - conda config --add channels bioconda
  - conda config --add channels https://conda.anaconda.org/thoba
  - conda info -a
  - conda install conda-build anaconda-client

script:
  - travis_wait 30 pytest -v test/ --cov=vcf2neo --cov-report term

after_success:
  - coveralls
  - test $TRAVIS_BRANCH = "master" && bash conda/conda_upload.sh